SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06395
Pre Gene Modal
BGIBMGA013783
Annotation
AF461149_1_transposase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.603
 

Sequence

CDS
ATGGAGTGGACGCTTAAAGAAGAGCGTGTTGCAGTTATTGCGTTGCATCGTTGCGGTTACGCGCCAATTCAAATTTTAAACATACTGAAAAATTTGAATATAACCAAAAGATTCGTTTATCGTACCATCAAACGATACAATGAAGACTCTAGTGTAGATGACAGGTCAAGAAGTGGTCGCTCTCGGTCTGTTAGGACTCCAGCAGTGATAAAAGCTGTGAAGGCGCGAATTCAAAGAAATCCCAAACTCCTGACGAACCTTGTGGAACCTGTTTCTCATACCATGTTCAATAACAGGCACTGGGTATTCCAACAAGACTCGGCGCCAGCTCATAGAGCGAAGAGCACACAAGACTGGCTGGCGGCGCGTGAAATCGACTTCATCCGGCACGAAGACTGGCCCTCCTCCAGTCCAGATTTGAATCCGTTAGATTACAAGATATGGCAACACTTGGAGGAAAAGGCGTGCTCAAAGCCTCATCCCAATTTGGAGTCACTCAAGACATCTTTGATTAAGGCAGCCGCCGATATTGACATGGACCTCGTTCGTGCTGCGATAGACGACTGGCCGCGCAGATTGAAGGCCTGTATTCAAAATCACGGAGATAATTTTGAATAA
Protein
MEWTLKEERVAVIALHRCGYAPIQILNILKNLNITKRFVYRTIKRYNEDSSVDDRSRSGRSRSVRTPAVIKAVKARIQRNPKLLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGDNFE

Summary

Pfam
PF13358   DDE_3
Interpro
IPR038717   Tc1-like_DDE_dom        + More
IPR009057   Homeobox-like_sf       
SUPFAM
SSF46689   SSF46689       
PDB
5CR4     E-value=1.23799e-08,     Score=139

Ontologies

Topology

Length:
205
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.817779999999999
Exp number, first 60 AAs:
0.81758
Total prob of N-in:
0.12522
outside
1  -  205
 
 

Population Genetic Test Statistics

Pi
34.275625
Theta
45.081546
Tajima's D
0.895561
CLR
19.808853
CSRT
0.632518374081296
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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