Silkworm Genome Informatics Database

Gene

KWMTBOMO06392

Pre Gene Modal

BGIBMGA011929

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_K02A2.6-like_[Papilio_machaon]

Location

Bomo_Chr11(-):6138189-6143910 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.66

CDS

ATGAAGATTCTCCTTGCTATTGCATTAATATTGTCAACAGTAATGTGGGTGTCAACACAACAGCCACAAGGAGTGCACACGTACTGCGGGCGCCACTTGGCTCGCACTCTGGCCGACCTGTGTTGGGAAGCGGGCGTGGACAAGCGCAGCGGTGCTCAGTTCGCGAGCTACGGCTCCGCGTGGCTGATGCCGTACTCGGAAGGACGCGGCAAACGAGGCATCGTGGATGAGTGCTGTCTCAGACCCTGCAGCGTGGACGTGCTTCTGTCCATGCAAACTTGGAAGACTTGGAGATGCAGACTCACACAGTGGTTCATCGCGAACGATATTAACGTGGTGAAAGATCCAGCAGGAGTCAAAAGACGGGCCATATTGCTTAGCACACTCAGCGAATCTACCTACAAACTGGCAGCTGATCTCGTGCTGCCTAAAGAAGTTCAAGAAGTACCATACGAAGATATAGTTAGTGCCTTGGACAACCATTTCACTCCAAAATCAGTGGGATTTGGCGAGCGTCATCATTTTTATGCCGCCACACAACTACCCCAGGAGACACCATCACAGTGGGCTGCGAGGTTACGAGGTCTCACTTCTCAGTGTAACTTCAGCAATGTAGAAGAAGCATTAAGAGATCGATTCATTATGGGTATGCTGCCGGGCGTGGAGAAAGAAAAAATGTACGTGCAGGAGCTGGCCGGGCTGACCTTCGCCAGGGCTGTGGAGCTGACCGAGAGCTTGCGCAGCGCCCGCGCGGCTGCTGCTGCAAGCGCTGCTGCCGAGACTGTCGTTACAGAGCTGTACAAAATAGGCAAACGTTCTCCGACTAGTGTACCTCAAAGTGCAAAAGTAAAGTGTTCCGTGTGTGGTTATTCGAATCACAAAGCCGCGGAGTGTCGTTTTGCGAGTTACACTTGTAGGAAGTGCAACAAAAAAGGACATTTGCGTAGAATGTGCAAAAGAATCAATTATGTTGTAACGGAGGAGAACGATGAAGGTGACGGTGACGACGGTAAAATTTGTAACATTCGATCTTTGCGAGGTGAACCATTAATCGAAGCCGTGTGTGTCAATGGTATCAGAATGAACTTTGAGATTGATAGTGGGTCAGCTGTTACCGTTATGTCCGTAGATACATATAACGAACATTTTAAAAACATTCCCTTATTTAGCACAAATAAGAAGTTATTAAGTTACTCGGGTGACGTGTTAGGTTGCGCCGGTCGCGCTCAGTTGTTAGTGGAGTGGCGGGGTCGCACGCGCCAGCTCGACGTGTACGTGGTGCGCGATGGCGGACCGCCTTTACTGGGCCGCGACTTCATCGCACAATTTGAACTGCAGCTAGCGCCCGTATATAAATGTGCCACTACCCGTGACACGTTGAAATTAATACAGGAACAATATCCCGCCGTGTTCTCGGACAAGCTAGGTAAATTCAACAAATATAAAGTTAATTTGAAATTAAAAGAAAGTGCTCATCCTATATTTTTTAAACCACGGCCGGTCGCATTTGCTCTGCGTGAAAAAGTGGAAAAAGAGATAAACCGTTTGGTGGGACTGGGAGTACTCCGACCAGTCGAGCATTCCGACTACGCGTCACCAATAGTCCCGGTACTGAAACGTGACGGTTCGGTCCGTATCTGCGCGGACTACTCTGTTACTATAAACAAGCAATTAGTTGTAGAACAGTATCCGTTGCCTACCGTAAACGAGTTGTTTTCTAAACTATACGGGGGCCAGAAATTTACTAAATTAGATTTGTCTATGGCCTACGGTCAGTTTTGTCTGGATGAAGAATCCCAAAAGTTAACTTGTATCAATACGCATAAAGGGATCTTCGCGTATACGCGTTTGGTGTTCGGGTTAGCTAGTGGGCCATCAATTTTCCAGCGAGCCATGGATACAGTGCTAGCGGGCCTGGACGGCACGCTGTGTTTATTGGACGATGTGCTCATAACGGGTCGCAATGACTCTGAACATCTTGAGAGATTGCATCAGGTCCTAAAACGGTTGCAAGACGCAGGATTTGTTCTACAAAAGTCTAAATCTACGACCGACTCCGCCGCGCACTCCGGTGTGCCCGTGGGAATACCCCCACAACCCTTTTACCGTGTACACTTAGACTTTCTAGGTCCGCTGAATGGTCGGATGTACCTGGTCCTAGTAGACGCGTACTCCAAGTGGCTTGAGGTGTACGAGATGGCTTCCACAACTACTAGTGCGGTCATTGAAAGAATGTATGAGTACATGTCCAGATACGGATTGCCTCATACGGTAGTTACGGATAACGGTGTGATATTAAAGAGAATTGGTAAAAACGTATACATTGTAAAAGACTTTAAATCTTCAATACAACTCAAGAGGCACTCTGAACAGCTGTTTTCGTGCAAAACCAAATGTGGTGCCAGTCAAACCTGGGCGGATGACTTGAGCGGTTCTATTGCTCCAACCGTTGCTAGTCCGGCAACGGGGATGATGTCGTCGCCTTGTGATGATAGTAGCGGCATCGGACCTCACACACACGACGAAGAGAGTGCAACTGAGGAGAGGGAAGAGGAGAGCGGCCACACTGGAATCTCTAGTGCATGTGACAATCAGCCGAATCGGGAGTCACCGGAACCGAGTCACGTAACTGTCACGCGAGGAGTGCGTCGACCCGCGCAGTCTGAAGACTCTGAAGAAGGGGATCTGTTCTTCGAGGCAGAGGAGGTGAGCTTGGAGCCCCAAAATATTAGGGAGCCCAGGTTTCCTAAACGTAACCGTCCTAGGGTTAATTATAGACAGTTTTATTAA

Protein

MKILLAIALILSTVMWVSTQQPQGVHTYCGRHLARTLADLCWEAGVDKRSGAQFASYGSAWLMPYSEGRGKRGIVDECCLRPCSVDVLLSMQTWKTWRCRLTQWFIANDINVVKDPAGVKRRAILLSTLSESTYKLAADLVLPKEVQEVPYEDIVSALDNHFTPKSVGFGERHHFYAATQLPQETPSQWAARLRGLTSQCNFSNVEEALRDRFIMGMLPGVEKEKMYVQELAGLTFARAVELTESLRSARAAAAASAAAETVVTELYKIGKRSPTSVPQSAKVKCSVCGYSNHKAAECRFASYTCRKCNKKGHLRRMCKRINYVVTEENDEGDGDDGKICNIRSLRGEPLIEAVCVNGIRMNFEIDSGSAVTVMSVDTYNEHFKNIPLFSTNKKLLSYSGDVLGCAGRAQLLVEWRGRTRQLDVYVVRDGGPPLLGRDFIAQFELQLAPVYKCATTRDTLKLIQEQYPAVFSDKLGKFNKYKVNLKLKESAHPIFFKPRPVAFALREKVEKEINRLVGLGVLRPVEHSDYASPIVPVLKRDGSVRICADYSVTINKQLVVEQYPLPTVNELFSKLYGGQKFTKLDLSMAYGQFCLDEESQKLTCINTHKGIFAYTRLVFGLASGPSIFQRAMDTVLAGLDGTLCLLDDVLITGRNDSEHLERLHQVLKRLQDAGFVLQKSKSTTDSAAHSGVPVGIPPQPFYRVHLDFLGPLNGRMYLVLVDAYSKWLEVYEMASTTTSAVIERMYEYMSRYGLPHTVVTDNGVILKRIGKNVYIVKDFKSSIQLKRHSEQLFSCKTKCGASQTWADDLSGSIAPTVASPATGMMSSPCDDSSGIGPHTHDEESATEEREEESGHTGISSACDNQPNRESPEPSHVTVTRGVRRPAQSEDSEEGDLFFEAEEVSLEPQNIREPRFPKRNRPRVNYRQFY

Uniprot

A0A1Y1LPV1 A0A3P8VLQ9 A0A3P8VSE7 A0A1X7TR37 A0A1Y1NDL2 A0A1Y1NGB8 + More
A0A1S3KHX3 A0A3S0ZSV8 A0A2S2PU23 A0A3P8Q506 A0A267GR92 A0A267EXJ4 A0A1E1XLA2

Pubmed

28004739 24487278 29209593

EMBL

GEZM01051399 JAV74971.1 GEZM01005739 JAV95951.1 GEZM01005740 JAV95950.1 + More
RQTK01000185 RUS85038.1 GGMR01020219 MBY32838.1 NIVC01000183 PAA88548.1 NIVC01001575 PAA66240.1 GFAA01003440 JAT99994.1

Proteomes

UP000265120 UP000007879 UP000087266 UP000271974 UP000265100 UP000215902 + More

Pfam

PF17919   RT_RNaseH_2        + More
PF00078   RVT_1
PF17921   Integrase_H2C2
PF00665   rve
PF00378   ECH_1
PF00098   zf-CCHC

Interpro

IPR000477   RT_dom        + More
IPR021109   Peptidase_aspartic_dom_sf
IPR036875   Znf_CCHC_sf
IPR041577   RT_RNaseH_2
IPR041588   Integrase_H2C2
IPR001995   Peptidase_A2_cat
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core
IPR036397   RNaseH_sf
IPR001878   Znf_CCHC
IPR001753   Enoyl-CoA_hydra/iso
IPR029045   ClpP/crotonase-like_dom_sf
IPR001969   Aspartic_peptidase_AS

SUPFAM

SSF57756   SSF57756        + More
SSF50630   SSF50630
SSF53098   SSF53098
SSF52096   SSF52096

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A1Y1LPV1 A0A3P8VLQ9 A0A3P8VSE7 A0A1X7TR37 A0A1Y1NDL2 A0A1Y1NGB8 + More
A0A1S3KHX3 A0A3S0ZSV8 A0A2S2PU23 A0A3P8Q506 A0A267GR92 A0A267EXJ4 A0A1E1XLA2

PDB

4OL8 E-value=4.40735e-24, Score=279

KEGG

105841908 no KO assigned | (RefSeq) uncharacterized LOC105841908

GO

GO:0003676 GO:0008270 GO:0015074 GO:0004190 GO:0005615 GO:0008083 GO:0005179 GO:0005576 GO:0015923 GO:0005634 GO:0006260

SignalP

Position: 1 - 19, Likelihood: 0.997922

Length:

929

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.47014

Exp number, first 60 AAs:

0.46665

Total prob of N-in:

0.02455

outside

1 - 929

Pi

231.318397

Theta

176.962094

Tajima's D

1.115792

CLR

47.753828

CSRT

0.693965301734913

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree