Gene

KWMTBOMO06383

Pre Gene Modal

BGIBMGA011925

Annotation

PREDICTED:_netrin-B_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr11(+):6035841-6037045      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 3.618

CDS

ATGGCAGCTCTGGTGTCGGCGCTGCTGCTGGCAGTGTTGCTGGCTGCCGCGGTGGCCACCCCACCGGACCCCTGCTACGAGGAGTCGCGCCCTCGGAGGTGCATCCCCGATTTCGTGAATGCTGCTTTCGGTGCCCCCGTGATCGCGTCTTCAGCGTGCGGCCGTCGCGGGCCCGAGAACCTGTGCGACCCTCCACTCGACCAGTCTCCGGAGCTGGCTTGCAGGGTGTGCGATGCGGCTCGGCCTGACCGCCGCCACCCGTCGCTTTATCTCACAGACCTCAACAACCCCAATAACATAACGTGTTGGCGCTCGGCCGCGCTCATGCCAGCCTCGTACGACTCACCTCCCGACAATGTGTCGCTGACCCTCTCCCTCGGGAAGAAATATGAGTTGACGTACATCAGCCTACAGTTCTGTCCGAAGTCTGCCCGACCAGACTCAGTGGCGATCTACAAGAGTGCAGATTACGGGCTCAACTGGCAACCTTTCCAGTTCTACTCGAGTCAGTGTCGGCGGGTGTACGGCCGGCCCAACAAGGCCACGGTGACCGCCGCGAACGAGCAGGAGGCGAGGTGCTCCGACACCCACCGTCTGGCCGGCGACAGTGCAGGAGGCGCGCGACTTGCATTTAGTACCCTAGAGGGTCGACCCAGCGCGGCCAACTTCGACCTCTCCCCTGTGCTTCAGGACTGGGTGACCGCGACAGACGTGAGAGTCGTGTTTAATCGCTTGCACATGGTCAACGAAGGCGACGAGATAGATTTGAAGAAGCAGGCGGCTCCTGGCACACAGCACTACGCGGTATCTGATTTCGCCGTCGGAGGTCGGTGCAAGTGCAACGGGCACGCGTCGCGCTGCATCCCGATGAAGGAAGGAGAGGGCTCCAGCGCTGGTGGAGTAGTGCAACTGGCCTGCGACTGCAAGCACAACACCGCCGGTCGAGATTGCGAGAGATGCAAGCCGTTCCACTTCGATCGACCCTGGGGCCGCGCGACCGCCCGAGACGCCAACGAATGTAAAGGTCAGTCTAATGTTTATCACGGAATCGGAAAAATGTAG

Protein

MAALVSALLLAVLLAAAVATPPDPCYEESRPRRCIPDFVNAAFGAPVIASSACGRRGPENLCDPPLDQSPELACRVCDAARPDRRHPSLYLTDLNNPNNITCWRSAALMPASYDSPPDNVSLTLSLGKKYELTYISLQFCPKSARPDSVAIYKSADYGLNWQPFQFYSSQCRRVYGRPNKATVTAANEQEARCSDTHRLAGDSAGGARLAFSTLEGRPSAANFDLSPVLQDWVTATDVRVVFNRLHMVNEGDEIDLKKQAAPGTQHYAVSDFAVGGRCKCNGHASRCIPMKEGEGSSAGGVVQLACDCKHNTAGRDCERCKPFHFDRPWGRATARDANECKGQSNVYHGIGKM

Uniprot

H9JQW9   A0A2A4JNT5   A0A2W1C0P9   A0A2H1VCB8   A0A194PUR7   A0A0N0PF41   + More
A0A0L7LH47   A0A195B5K7   A0A0L7QW80   A0A026W9I1   T1I1I5   A0A310SFK5   A0A0M9ABD9   A0A195FQB3   A0A1B0DHY6   B0XC85   A0A154PNG0   A0A1B0CDE2   K7J7Q0   Q0IGC8   Q0IGC2   B0XFM2   T1IHF5   A0A2P6KWY7   A0A1Q3FV05   A0A1Q3FV72   A0A336MLD0   A0A087TQ16   A0A336M6K0   B7P5R8   V4AN98   A0A3S3RY09   A0A336MIN0   A0A0P7TYR9   F5BU38   A0A2P1DV55   A0A0P7XL33   A0A165USS5   Q9NFW6   A0A060XZ03   A0A060W5M7   A0A0P5W134   A0A0P6HRZ8   A0A0P4XYZ6   A0A0N8CYF0   A0A1J1I943   A0A2I4AY51   A0A3B1KAR5   A0A3N0XFW4   A0A0N8D0A7   A0A0P5AIN2   A0A0P6EJ88   A0A3B4BS53   T1II68   A0A060X0C3   A0A060WRZ6   A0A0P5NGS2   A0A3N0YAZ9   A0A3B4BNG7   A0A2I4AY75   Q29RD2   A0A3B1JST2   A0A0R4IN40   A0A2I4AY73   A0A2I4AY69   A0A0P4ZHD4   A0A0P6G559   A6YB92   A0A164U1Q7   W5N6U6   A0A3B5LRA3   A0A315WA52   A0A3P8XKA9   A0A0P5HX01   A0A0N7ZRE0   A0A0P4WD43   A0A3R7SKF6   A0A2P4SS64   A0A3Q1F2U3   A0A1S3JF50   A0A1S3JED4   A0A3B3CFV1   A0A1S3JDN1   A0A3P8XKC4   A0A1S3JDW4   A0A1S3JDP2   A0A3B3ZZV3   A0A0P5RCR6   A0A3B5M0C3   A0A3B4GE39   A0A147A3Q7   A0A3Q1JLT0   A0A3Q2UXU7   A0A3Q3GV46   A0A3B3YIJ3   A0A3Q2Z716   A0A0B5JK74   A0A3Q2YSH1   A0A3B4ZCK8   A0A3B4WH08  

Pubmed

19121390    28756777    26354079    26227816    24508170    20075255    + More
17510324    23254933    21334324    29236686    11180840    24755649    25329095    23594743    17448990    29703783    25069045    29451363    25463417    26190107   

EMBL

BABH01028601    NWSH01001020    PCG73080.1    KZ149897    PZC78690.1    ODYU01001780    + More
SOQ38455.1    KQ459590    KPI97151.1    KQ459692    KPJ20422.1    JTDY01001164    KOB74684.1    KQ976582    KYM79798.1    KQ414716    KOC62857.1    KK107320    EZA52767.1    ACPB03016596    KQ761843    OAD56602.1    KQ435692    KOX81077.1    KQ981305    KYN42780.1    AJVK01006076    AJVK01006077    AJVK01006078    DS232678    EDS44691.1    KQ435005    KZC13406.1    AJWK01007724    AAZX01003032    AAZX01003033    AAZX01003034    AAZX01003035    AAZX01003041    AAZX01006162    AAZX01007365    AAZX01009310    AAZX01010627    AAZX01012590    CH477260    EAT45711.1    EAT45717.1    DS232941    EDS26885.1    JH429903    MWRG01004066    PRD30845.1    GFDL01003606    JAV31439.1    GFDL01003607    JAV31438.1    UFQS01001396    UFQT01001396    SSX10679.1    SSX30361.1    KK116254    KFM67205.1    UFQT01000629    SSX25886.1    ABJB010969459    DS642248    EEC01940.1    KB201234    ESO98632.1    NCKU01003340    RWS07715.1    SSX25888.1    JARO02008327    KPP62856.1    JF302896    ADY05326.1    KY709722    AVK72273.1    JARO02001333    KPP75780.1    KR232551    AMY99575.1    AJ252166    CAB72422.1    FR906523    CDQ84691.1    FR904335    CDQ59855.1    GDIP01093481    JAM10234.1    GDIQ01039810    JAN54927.1    GDIP01234933    JAI88468.1    GDIP01086647    JAM17068.1    CVRI01000044    CRK96739.1    RJVU01079141    ROI15691.1    GDIP01081391    JAM22324.1    GDIP01198518    JAJ24884.1    GDIQ01061994    JAN32743.1    JH430143    FR904733    CDQ70739.1    FR904598    CDQ67834.1    GDIQ01145524    JAL06202.1    RJVU01049122    ROL42928.1    BC114259    AAI14260.1    BX255899    GDIP01226071    JAI97330.1    GDIQ01039809    JAN54928.1    EF384215    ABO93214.1    LRGB01001636    KZS10976.1    AHAT01000424    AHAT01000425    NHOQ01000158    PWA32634.1    GDIQ01223785    JAK27940.1    GDIP01220017    JAJ03385.1    GDRN01048943    JAI66631.1    QCYY01003210    ROT64683.1    PPHD01026137    POI26937.1    GDIQ01122073    JAL29653.1    GCES01013194    JAR73129.1    KM655683    AJG06029.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000037510    UP000078540    + More
UP000053825    UP000053097    UP000015103    UP000053105    UP000078541    UP000092462    UP000002320    UP000076502    UP000092461    UP000002358    UP000008820    UP000054359    UP000001555    UP000030746    UP000285301    UP000034805    UP000193380    UP000183832    UP000192220    UP000018467    UP000261440    UP000000437    UP000076858    UP000018468    UP000261380    UP000265140    UP000283509    UP000257200    UP000085678    UP000261560    UP000261520    UP000261460    UP000265040    UP000264840    UP000261660    UP000261480    UP000264820    UP000261400    UP000261360   

PRIDE

H9JQW9   

Pfam

PF00053   Laminin_EGF        + More
PF00055   Laminin_N
PF01759   NTR

Interpro

IPR008211   Laminin_N        + More
IPR002049   Laminin_EGF       
IPR038684   Laminin_N_sf       
IPR013032   EGF-like_CS       
IPR018933   Netrin_module_non-TIMP       
IPR008993   TIMP-like_OB-fold       
IPR001134   Netrin_domain       
IPR008979   Galactose-bd-like_sf       

SUPFAM

SSF50242   SSF50242        + More
SSF49785   SSF49785       

Gene 3D

2.60.120.1490    

ProteinModelPortal

H9JQW9   A0A2A4JNT5   A0A2W1C0P9   A0A2H1VCB8   A0A194PUR7   A0A0N0PF41   + More
A0A0L7LH47   A0A195B5K7   A0A0L7QW80   A0A026W9I1   T1I1I5   A0A310SFK5   A0A0M9ABD9   A0A195FQB3   A0A1B0DHY6   B0XC85   A0A154PNG0   A0A1B0CDE2   K7J7Q0   Q0IGC8   Q0IGC2   B0XFM2   T1IHF5   A0A2P6KWY7   A0A1Q3FV05   A0A1Q3FV72   A0A336MLD0   A0A087TQ16   A0A336M6K0   B7P5R8   V4AN98   A0A3S3RY09   A0A336MIN0   A0A0P7TYR9   F5BU38   A0A2P1DV55   A0A0P7XL33   A0A165USS5   Q9NFW6   A0A060XZ03   A0A060W5M7   A0A0P5W134   A0A0P6HRZ8   A0A0P4XYZ6   A0A0N8CYF0   A0A1J1I943   A0A2I4AY51   A0A3B1KAR5   A0A3N0XFW4   A0A0N8D0A7   A0A0P5AIN2   A0A0P6EJ88   A0A3B4BS53   T1II68   A0A060X0C3   A0A060WRZ6   A0A0P5NGS2   A0A3N0YAZ9   A0A3B4BNG7   A0A2I4AY75   Q29RD2   A0A3B1JST2   A0A0R4IN40   A0A2I4AY73   A0A2I4AY69   A0A0P4ZHD4   A0A0P6G559   A6YB92   A0A164U1Q7   W5N6U6   A0A3B5LRA3   A0A315WA52   A0A3P8XKA9   A0A0P5HX01   A0A0N7ZRE0   A0A0P4WD43   A0A3R7SKF6   A0A2P4SS64   A0A3Q1F2U3   A0A1S3JF50   A0A1S3JED4   A0A3B3CFV1   A0A1S3JDN1   A0A3P8XKC4   A0A1S3JDW4   A0A1S3JDP2   A0A3B3ZZV3   A0A0P5RCR6   A0A3B5M0C3   A0A3B4GE39   A0A147A3Q7   A0A3Q1JLT0   A0A3Q2UXU7   A0A3Q3GV46   A0A3B3YIJ3   A0A3Q2Z716   A0A0B5JK74   A0A3Q2YSH1   A0A3B4ZCK8   A0A3B4WH08  

PDB

4PLO     E-value=6.54773e-93,     Score=869

KEGG

101744167    K06843 netrin 1 | (RefSeq) netrin-B

GO

GO:0005576   GO:0016021   GO:0030516   GO:0016358   GO:0021960   GO:0071678   GO:0008045   GO:0003146   GO:0009888   GO:0030878   GO:0005604   GO:0016525   GO:0035908   GO:0061626   GO:0001944   GO:0001947   GO:0001525   GO:0001569   GO:0048665   GO:0048846   GO:0009887   GO:0021952   GO:0033564  

Subcellular location

Secreted  

SignalP

Position:   1 - 19,         Likelihood:  0.997984

 

 

Length:

353

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.17367

Exp number, first 60 AAs:

4.17367

Total prob of N-in:

0.21449

outside

1  -  353

 

 

Pi

330.895591

Theta

213.235311

Tajima's D

1.621617

CLR

0

CSRT

0.813409329533523

Interpretation

Uncertain