Silkworm Genome Informatics Database

Gene

KWMTBOMO06375

Pre Gene Modal

BGIBMGA011921

Annotation

PREDICTED:_RNA-binding_protein_40-like_[Plutella_xylostella]

Location

Bomo_Chr11(+):5938021-5939084 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.541

CDS

ATGAAAAGAATTCCTATAAATCAAGAAGAAGTATTTGATATTACAGCTGTACAGGAGCCTAAGAAAATATGTGTTATGGTGTCTCAAGACAGTTTACAGAAACCAGTAGAAGAACCTGAAGTCATCGGTGAAATTGGAAAATATGACAAAGAAGAAAAGCCTCAAAACATTGAAGAGAGTATTTCTGAACCTGAACAACCTATAATAACCAGAAAAGAATTGTTAAAGAATCGTCTATCTCATTATGACATGAAGATTCTGCCAGTATTTAAAAATTACCACCCGGGTCAACCATCGTTGAGGCTGTACATTAAAAATTTAGCCAAAAATGTGACCAGTGAAGATGTGGAGAGGATTTATCGGCTATATGTTGTAGATCTCACTGAGGAAGAACGCCAAGGCTTTGATGTGAGAGTCATGCAAGAGGGAAGGATGAAAGGTCAAGCATTTGTCACGTTTCCATCGGAGAGGATTGCACAAAAAGCACTCACAGAAACAAATGGTTTCATGTTGAAAGACAGACCTATGATTGTACAGTTTGCTAGAGCAGCCAATAAACGAACTATAGAATAA

Protein

MKRIPINQEEVFDITAVQEPKKICVMVSQDSLQKPVEEPEVIGEIGKYDKEEKPQNIEESISEPEQPIITRKELLKNRLSHYDMKILPVFKNYHPGQPSLRLYIKNLAKNVTSEDVERIYRLYVVDLTEEERQGFDVRVMQEGRMKGQAFVTFPSERIAQKALTETNGFMLKDRPMIVQFARAANKRTIE

Uniprot

H9JQW5 A0A2H1X3Y3 A0A2W1BUH5 A0A212EJ10 A0A194PWL0 A0A0N1IQG3 + More
A0A1E1W354 A0A0L7L6N3 A0A2H8TRJ5 J9KA89 D6WGC1 A0A1W4XHB1 A0A023F7N5 A0A3R7MMX9 A0A2R7WEC6 A0A069DZ25 A0A0L8HDU5 A0A1Y1MVW4 R4FMF7

Pubmed

19121390 28756777 22118469 26354079 26227816 18362917 + More
19820115 25474469 26334808 28004739

EMBL

BABH01028610 ODYU01013251 SOQ59952.1 KZ149897 PZC78698.1 AGBW02014545 + More
OWR41465.1 KQ459590 KPI97144.1 KQ459692 KPJ20429.1 GDQN01009695 JAT81359.1 JTDY01002659 KOB70994.1 GFXV01004046 GFXV01004417 MBW15851.1 MBW16222.1 ABLF02023620 KQ971329 EFA01147.1 GBBI01001331 JAC17381.1 QCYY01003031 ROT65826.1 KK854643 PTY17571.1 GBGD01001380 JAC87509.1 KQ418444 KOF87322.1 GEZM01023070 JAV88595.1 ACPB03004219 ACPB03004220 GAHY01001023 JAA76487.1

Proteomes

UP000005204 UP000007151 UP000053268 UP000053240 UP000037510 UP000007819 + More
UP000007266 UP000192223 UP000283509 UP000053454 UP000015103

PRIDE

H9JQW5

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR035979   RBD_domain_sf
IPR034147   RBM40_RRM1

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

CDD

cd12238 RRM1_RBM40_like

ProteinModelPortal

H9JQW5 A0A2H1X3Y3 A0A2W1BUH5 A0A212EJ10 A0A194PWL0 A0A0N1IQG3 + More
A0A1E1W354 A0A0L7L6N3 A0A2H8TRJ5 J9KA89 D6WGC1 A0A1W4XHB1 A0A023F7N5 A0A3R7MMX9 A0A2R7WEC6 A0A069DZ25 A0A0L8HDU5 A0A1Y1MVW4 R4FMF7

PDB

3EGN E-value=1.85691e-23, Score=266

KEGG

101745279 K13157 U11/U12 small nuclear ribonucleoprotein 65 kDa protein | (RefSeq) RNA-binding protein 40-like

GO

GO:0003723 GO:0005689 GO:0000398 GO:0097157 GO:0030626 GO:0000166 GO:0003676 GO:0030529 GO:0042254 GO:0016310 GO:0016627 GO:0030145 GO:0015923 GO:0005634 GO:0006260

Length:

190

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.21668

outside

1 - 190

Pi

139.651395

Theta

155.064529

Tajima's D

-0.319657

CLR

63.549312

CSRT

0.28033598320084

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics