Gene

KWMTBOMO06372  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011920

Annotation

cleavage_and_polyadenylation_specific_factor_4_[Bombyx_mori]

Location

Bomo_Chr11(+):5918651-5921348      View in EpiBrowser

Transcription factor

zf-CCCH

Location in the cell

Extracellular   Reliability : 2.742

CDS

ATGGAAGTAATCGTTGCTAACGTTGAGCATATAAAATTCGCTATTGACTATGCTCTAGAAGAGCAATATGGGGCTCTACCGCTACCATTCCCAGGAATGGACAAATCTACAGCAGCGGTATGTGAATTTTATTCTCAGCCTGGCGGCTGTGGTAACGGGGCCCAATGCCCCTATAGACATGTTCGAGGCGATCGTACTGTGGTTTGCAAGCACTGGCTTCGAGGACTCTGCAAGAAAGGCGATCAATGTGAGTTCTTGCACGAGTACGACATGTCTAAAATGCCAGAGTGCTATTTCTACGCCAGATTCAATGCATGTCATAACAAGGAATGCCCATTTCTACACATTGATCCTGAGAGTAAAATAAAAGATTGCCCATGGTATGACAGAGGCTTCTGCCGCCATGGACCACACTGTCGTCACAGGCACGTACGACGTGTGCTCTGCATAAACTACCTAGCCGGTTTCTGCCCAGATGGAGCCTCGTGCAAATTTATGCATCCACGCTTTGAATTACCAGCACCACCAGATCAACCCAAAGATGCAAAACGCCTTCCTGTTTGTCACAGCTGTTCGGAAGTTGGACACAAAGCTTCGTCATGTCCAAAAATACCACCTGATCAAAGAGAAGCAGCCCAGAAGCAAGAGGAAGCTAGATACCGTTCCCTGGGCTATGTTAAACCCGCAATCGAGCAAGAAGACAACAGTGGTCCAAGATTACAAAAAATAGTCCACAAACCCATAGAAGAAGTAACCTGTTTTAAGTGTGGCGCAAAAGGTCACTATGCAAATAAATGTCCCAAAGGTCATCTCGCCTTTCTCTCCAGCCAAAACCAGGGAGGAACAAACTTTAGAAAACAAAACTAG

Protein

MEVIVANVEHIKFAIDYALEEQYGALPLPFPGMDKSTAAVCEFYSQPGGCGNGAQCPYRHVRGDRTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDPESKIKDCPWYDRGFCRHGPHCRHRHVRRVLCINYLAGFCPDGASCKFMHPRFELPAPPDQPKDAKRLPVCHSCSEVGHKASSCPKIPPDQREAAQKQEEARYRSLGYVKPAIEQEDNSGPRLQKIVHKPIEEVTCFKCGAKGHYANKCPKGHLAFLSSQNQGGTNFRKQN

Uniprot

Q1HQ97   A0A2W1BWI7   A0A2H1WR44   A0A3S2L7D5   A0A212EIZ0   H9JQW4   + More
S4NMN9   A0A1E1W3M1   A0A0N0PET8   A0A194PUZ3   A0A1B0CQ90   A0A1B0DBR1   A0A1L8DGL5   A0A0K8TLB8   T1GTJ1   A0A0T6BE32   A0A067QXM8   A0A182VZR9   A0A182H4J8   U5EXG2   A0A182RT02   A0A084VHR2   A0A1W4WYY0   A0A182Y3Y0   A0A182QUW2   D6WGD0   A0A182IP69   A0A182NQI3   A0A182PUF6   A0A182LE19   F5HKN3   A0A182HS55   B0WPP6   A0A182JPS6   A0A182XAB0   A0A182V8K7   A0A1Q3EYI4   A0A182TEG2   A0A2M4AX41   A0A0L7R4D8   A0A182FQX0   A0A151XK19   A0A2M4AXF6   W5JC20   F4WCG2   A0A158NJE9   A0A195FQN0   A0A195B6B0   A0A195EKS4   A0A1Y1N4N1   A0A232FFB8   A0A195C4C8   A0A2A3EE96   A0A088ARJ3   J3JUQ7   A0A336MAV9   A0A1B6CMF8   A0A069DQV2   A0A1B6DZ05   A0A0V0GCH4   A0A023F4N5   E2A957   A0A0P4VM20   A0A146MB90   A0A154P619   A0A0J7L135   E2BU96   T1JBL3   A0A1B6LCP4   A0A2R5LLN1   A0A1I8QE09   A0A1I8MIH8   A0A1Z5LAP4   A0A0K8UT45   A0A034WFC1   A0A1A9Y6J8   A0A1B0BIB2   A0A224YK10   A0A131YUK1   A0A131XBM9   L7M8N8   A0A2S2QFX8   A0A2H8TG97   J9K384   A0A0P5FFT2   A0A087U9J2   A0A182MFG0   A0A023GK47   G3MQJ6   A0A1E1XDJ0   A0A1E1X633   A0A0M5IW47   A0A131XXN0   B7Q714   A0A1Q3EYN5   A0A0P4WK44   A0A0Q9WB67   C1C221   A0A336LE51   A0A3S3SLV2  

Pubmed

28756777    22118469    19121390    23622113    26354079    26369729    + More
24845553    26483478    24438588    25244985    18362917    19820115    20966253    12364791    14747013    17210077    20920257    23761445    21719571    21347285    28004739    28648823    22516182    23537049    26334808    25474469    20798317    27129103    26823975    25315136    28528879    25348373    28797301    26830274    28049606    25576852    22216098    28503490    17994087   

EMBL

DQ443155    ABF51244.1    KZ149897    PZC78701.1    ODYU01010366    SOQ55432.1    + More
RSAL01000104    RVE47358.1    AGBW02014545    OWR41463.1    BABH01028611    GAIX01014251    JAA78309.1    GDQN01009481    JAT81573.1    KQ459692    KPJ20431.1    KQ459590    KPI97142.1    AJWK01023260    AJVK01030212    GFDF01008491    JAV05593.1    GDAI01002489    JAI15114.1    CAQQ02030686    LJIG01001400    KRT85540.1    KK853239    KDR09506.1    JXUM01109659    KQ565341    KXJ71075.1    GANO01000089    JAB59782.1    ATLV01013213    KE524845    KFB37506.1    AXCN02001534    KQ971329    EFA01126.1    AAAB01008859    EGK96785.1    APCN01000243    DS232027    EDS32449.1    GFDL01014682    JAV20363.1    GGFK01012019    MBW45340.1    KQ414657    KOC65689.1    KQ982052    KYQ60681.1    GGFK01011957    MBW45278.1    ADMH02001643    ETN61636.1    GL888070    EGI68142.1    ADTU01001915    KQ981305    KYN42773.1    KQ976582    KYM79802.1    KQ978739    KYN28838.1    GEZM01013694    JAV92368.1    NNAY01000319    OXU29253.1    KQ978292    KYM95470.1    KZ288282    PBC29612.1    APGK01021647    BT126972    KB740350    KB632240    AEE61934.1    ENN80839.1    ERL90524.1    UFQT01000644    SSX26049.1    GEDC01022827    JAS14471.1    GBGD01002456    JAC86433.1    GEDC01006386    JAS30912.1    GECL01000660    JAP05464.1    GBBI01002355    JAC16357.1    GL437711    EFN70042.1    GDKW01001036    JAI55559.1    GDHC01012563    GDHC01001920    JAQ06066.1    JAQ16709.1    KQ434825    KZC07369.1    LBMM01001422    KMQ96351.1    GL450619    EFN80724.1    JH432011    GEBQ01018693    JAT21284.1    GGLE01006310    MBY10436.1    GFJQ02002585    JAW04385.1    GDHF01022626    JAI29688.1    GAKP01006131    GAKP01006129    GAKP01006127    GAKP01006125    GAKP01006124    GAKP01006122    JAC52830.1    JXJN01014867    GFPF01006810    MAA17956.1    GEDV01006731    JAP81826.1    GEFH01003517    JAP65064.1    GACK01005511    JAA59523.1    GGMS01006889    MBY76092.1    GFXV01000957    MBW12762.1    ABLF02017349    GDIP01144258    GDIQ01255104    LRGB01000568    JAJ79144.1    JAJ96620.1    KZS18158.1    KK118856    KFM74031.1    AXCM01000621    GBBM01002010    JAC33408.1    JO844147    JO844148    AEO35764.1    GFAC01001883    JAT97305.1    GFAC01004459    JAT94729.1    CP012523    ALC38456.1    GEFM01003782    JAP72014.1    ABJB010938902    DS871365    EEC14636.1    GFDL01014646    JAV20399.1    GDRN01066667    JAI64499.1    CH940649    KRF81987.1    BT080900    ACO15324.1    UFQS01004045    UFQT01004045    SSX16128.1    SSX35455.1    NCKU01000143    RWS16949.1   

Proteomes

UP000283053    UP000007151    UP000005204    UP000053240    UP000053268    UP000092461    + More
UP000092462    UP000015102    UP000027135    UP000075920    UP000069940    UP000249989    UP000075900    UP000030765    UP000192223    UP000076408    UP000075886    UP000007266    UP000075880    UP000075884    UP000075885    UP000075882    UP000007062    UP000075840    UP000002320    UP000075881    UP000076407    UP000075903    UP000075902    UP000053825    UP000069272    UP000075809    UP000000673    UP000007755    UP000005205    UP000078541    UP000078540    UP000078492    UP000215335    UP000078542    UP000242457    UP000005203    UP000019118    UP000030742    UP000000311    UP000076502    UP000036403    UP000008237    UP000095300    UP000095301    UP000092443    UP000092460    UP000007819    UP000076858    UP000054359    UP000075883    UP000092553    UP000001555    UP000008792    UP000285301   

PRIDE

Q1HQ97    H9JQW4   

Pfam

PF00098   zf-CCHC        + More
PF00642   zf-CCCH
PF01248   Ribosomal_L7Ae
PF15663   zf-CCCH_3

Interpro

IPR000571   Znf_CCCH        + More
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR036855   Znf_CCCH_sf       
IPR018492   Ribosomal_L7Ae/L8/Nhp2       
IPR004038   Ribosomal_L7Ae/L30e/S12e/Gad45       
IPR029064   L30e-like       
IPR004037   Ribosomal_L7Ae_CS       
IPR002415   H/ACA_rnp_Nhp2_euk       
IPR041686   Znf-CCCH_3       

SUPFAM

SSF90229   SSF90229        + More
SSF57756   SSF57756       
SSF55315   SSF55315       

Gene 3D

3.30.1330.30    

ProteinModelPortal

Q1HQ97   A0A2W1BWI7   A0A2H1WR44   A0A3S2L7D5   A0A212EIZ0   H9JQW4   + More
S4NMN9   A0A1E1W3M1   A0A0N0PET8   A0A194PUZ3   A0A1B0CQ90   A0A1B0DBR1   A0A1L8DGL5   A0A0K8TLB8   T1GTJ1   A0A0T6BE32   A0A067QXM8   A0A182VZR9   A0A182H4J8   U5EXG2   A0A182RT02   A0A084VHR2   A0A1W4WYY0   A0A182Y3Y0   A0A182QUW2   D6WGD0   A0A182IP69   A0A182NQI3   A0A182PUF6   A0A182LE19   F5HKN3   A0A182HS55   B0WPP6   A0A182JPS6   A0A182XAB0   A0A182V8K7   A0A1Q3EYI4   A0A182TEG2   A0A2M4AX41   A0A0L7R4D8   A0A182FQX0   A0A151XK19   A0A2M4AXF6   W5JC20   F4WCG2   A0A158NJE9   A0A195FQN0   A0A195B6B0   A0A195EKS4   A0A1Y1N4N1   A0A232FFB8   A0A195C4C8   A0A2A3EE96   A0A088ARJ3   J3JUQ7   A0A336MAV9   A0A1B6CMF8   A0A069DQV2   A0A1B6DZ05   A0A0V0GCH4   A0A023F4N5   E2A957   A0A0P4VM20   A0A146MB90   A0A154P619   A0A0J7L135   E2BU96   T1JBL3   A0A1B6LCP4   A0A2R5LLN1   A0A1I8QE09   A0A1I8MIH8   A0A1Z5LAP4   A0A0K8UT45   A0A034WFC1   A0A1A9Y6J8   A0A1B0BIB2   A0A224YK10   A0A131YUK1   A0A131XBM9   L7M8N8   A0A2S2QFX8   A0A2H8TG97   J9K384   A0A0P5FFT2   A0A087U9J2   A0A182MFG0   A0A023GK47   G3MQJ6   A0A1E1XDJ0   A0A1E1X633   A0A0M5IW47   A0A131XXN0   B7Q714   A0A1Q3EYN5   A0A0P4WK44   A0A0Q9WB67   C1C221   A0A336LE51   A0A3S3SLV2  

PDB

6DNH     E-value=3.54622e-75,     Score=715

KEGG

733099    K14404 cleavage and polyadenylation specificity factor subunit 4 | (RefSeq) cleavage and polyadenyla

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0008270   GO:0003676   GO:0046872   GO:0005730   GO:0042254   GO:0003723   GO:1990904   GO:0098789   GO:0004521   GO:0004674   GO:0016310   GO:0016627   GO:0030145   GO:0015923   GO:0005634   GO:0006260  

Length:

288

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00995

Exp number, first 60 AAs:

0.00045

Total prob of N-in:

0.04344

outside

1  -  288

 

 

Pi

218.818234

Theta

178.962184

Tajima's D

0.800258

CLR

23.681397

CSRT

0.60361981900905

Interpretation

Uncertain