Gene

KWMTBOMO06370  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011919

Annotation

rRNA_processing_protein_RRP7_[Operophtera_brumata]

Location

Bomo_Chr11(+):5913601-5914539      View in EpiBrowser

Full name

Ribosomal RNA-processing protein 7 homolog A      

Alternative Name

Gastric cancer antigen Zg14 homolog
Gastric cancer antigen Zg14

Location in the cell

Nuclear   Reliability : 3.225

CDS

ATGAAAGCCACAAAACGTACTCACGATTTCAAGGCACTTGCATTGAAATTGAATGATGATTCATCGTGTCCCCATTACATTTATTTCAAAGAGCACTCAGTTAGAGAACATACGAAAGATAAACCAGCTGGTAGAACAATTTTTATTGTCAACGTTCCACCTTATGCTGACGAAAAAGGCCTTACAAACGCGTTCAGCGAAGCGGGACCCATTTCGTCAGTAAAACTTTGCATAAAGCCTAACACAATGGAAGATGATATTCCTAAATTTATTTCTGAAAAACAGAAAAAGTCCTTTCAGGTTGCATATTTAGTTTTTGAAAAGGTGTCAGCATTGGATAGAGCATTACAGCTGAGTGAATTAAAACCCTTAAACAGTGAAAGTTATAGAATAAAAACTGGCATACAAAAATGGATTGAAGAGTTCAATAAAGAGATCTTACAACCAAAAACATTGAAAGAAAATATTGAAGCATTTATGAAGAAATATGATTCCGAAACTGCTAAAGAGAAAAAGAAAGAAAAAAAATTAGAACAGGAAGATGACGAAGGTTGGGTCACAGTCACAAAGGGAGGCAAAATTCAAAGTTTTGCTCGCACAGAAAAAGTAGAAAACAAAATCTTAGAGAAAGAAGAAAAAAATAAAAAGCGTAAAGAACTGAAGAATTTCTATACTTTTCAAATTCGAGAGTCGAAAATGAAACATATTGTAATGCTCAGGCAAAAGTTTGAAGAAGACAAGAAAAAGATAGCACAAATAAAACAAAGCCGCCGATTTAAACCATTTTAA

Protein

MKATKRTHDFKALALKLNDDSSCPHYIYFKEHSVREHTKDKPAGRTIFIVNVPPYADEKGLTNAFSEAGPISSVKLCIKPNTMEDDIPKFISEKQKKSFQVAYLVFEKVSALDRALQLSELKPLNSESYRIKTGIQKWIEEFNKEILQPKTLKENIEAFMKKYDSETAKEKKKEKKLEQEDDEGWVTVTKGGKIQSFARTEKVENKILEKEEKNKKRKELKNFYTFQIRESKMKHIVMLRQKFEEDKKKIAQIKQSRRFKPF

Similarity

Belongs to the RRP7 family.

Keywords

Complete proteome   Phosphoprotein   Reference proteome   RNA-binding   Polymorphism  

Feature

chain  Ribosomal RNA-processing protein 7 homolog A
sequence variant  In dbSNP:rs8139383.

Uniprot

A0A0L7L2D2   A0A212EJ15   A0A2H1WQS9   A0A2W1C3G6   S4P9F3   A0A194Q166   + More
A0A1E1WRS6   A0A0N1IIV0   A0A2J7PBA4   A0A067QKC0   A0A2P8XKZ2   A0A1B6IQA3   A0A1B6D7Q1   A0A1B6FFG9   A0A1B6KPF2   A0A2R5LH00   A0A1I8N8S0   G3T9E5   A0A2Y9DRX0   U3KAT8   A0A3L8SCW9   A0A1S2ZRN7   A0A0P6FHV3   A0A093GPY4   A0A182YB47   F7IC42   A0A3B5KCP9   F7DM75   A0A2K5E0W6   A0A0N8DF45   Q9D1C9   H0ZH82   A0A0P5MQ27   A0A1S3FUN1   A0A2Y9Q3V3   A0A2I0USC8   A0A1I8P7B7   A0A2K6EW11   B4MUY8   G1PKG8   A0A069DQG8   A0A131Z540   U6CXC6   A0A1Y1NKL1   U3EY11   A0A0N8EBP2   A0A224Z7P5   M3YY02   A7RUG7   A0A2Y9KU52   A0A182RZ97   A0A0P5BHQ8   B4JC28   Q5RA17   K9II52   A0A340WY68   H2P4M5   A0A0P6B968   A0A341AT96   Q3U5H9   L8I6V4   E2RT42   D3U0D6   A0A2K6S2Y8   A0A151LYX6   A0A1V4JA31   E9FWK4   D4AE65   W5QCE3   A0A091W0J8   A0A0P5YGX7   A0A1S3HVD5   G7N438   A0A212CDK5   A0A0P4VKQ8   A0A2Y9ECK0   A0A2Y9GZ94   A0A2Y9PZW0   A0A0V0GA97   A0A3Q7Q580   H9F5H8   A0A2U3XLT3   A0A0D9R028   B4KGH1   Q9Y3A4   Q4R3Q9   H9Z0Y3   A0A226MZF3   A0A250YEM2   A0A1B0FAM8   A0A3Q7UGK8   A0A3B0JVJ8   I3M1P4   A0A0Q3M852   A0A2K6C7S8   A0A096P186   A0A384AP89   A0A3Q1N7N8   A0A1W4UBC9  

Pubmed

26227816    22118469    28756777    23622113    26354079    24845553    + More
29403074    25315136    30282656    25244985    25243066    21551351    19892987    16141072    15489334    20360741    17994087    21993624    26334808    26830274    28004739    28797301    17615350    10349636    11042159    11076861    11217851    12466851    16141073    22751099    16341006    22293439    21292972    15057822    15632090    20809919    22002653    27129103    25319552    10810093    14702039    10591208    12087473    18669648    20068231    15944441    28087693    19393038   

EMBL

JTDY01003478    KOB69496.1    AGBW02014545    OWR41461.1    ODYU01010366    SOQ55430.1    + More
KZ149897    PZC78703.1    GAIX01009085    JAA83475.1    KQ459590    KPI97140.1    GDQN01001437    JAT89617.1    KQ459692    KPJ20433.1    NEVH01027131    PNF13610.1    KK853239    KDR09508.1    PYGN01001825    PSN32634.1    GECU01018611    JAS89095.1    GEDC01015693    JAS21605.1    GECZ01021066    JAS48703.1    GEBQ01029720    GEBQ01026654    JAT10257.1    JAT13323.1    GGLE01004569    MBY08695.1    AGTO01020304    QUSF01000028    RLW00205.1    GDIQ01057078    JAN37659.1    KL216282    KFV68824.1    GAMT01007094    GAMS01005053    GAMQ01006719    GAMP01009802    JAB04767.1    JAB18083.1    JAB35132.1    JAB42953.1    GDIP01039887    JAM63828.1    AK003698    AK032596    AK036247    AK088456    AK146821    AK159553    AK168189    AK168850    BC012523    ABQF01015818    GDIQ01153637    JAK98088.1    KZ505643    PKU48957.1    CH963857    EDW76333.1    AAPE02057530    AAPE02057531    GBGD01002576    JAC86313.1    GEDV01002645    JAP85912.1    HAAF01002686    CCP74512.1    GEZM01002735    JAV97155.1    GAMR01003166    JAB30766.1    GDIQ01042532    JAN52205.1    GFPF01011398    MAA22544.1    AEYP01076844    AEYP01076845    DS469540    EDO44850.1    GDIP01189755    JAJ33647.1    CH916368    EDW03041.1    CR859208    GABZ01007337    JAA46188.1    ABGA01141717    ABGA01141718    NDHI03003480    PNJ37379.1    GDIP01018488    JAM85227.1    AK153565    BAE32099.1    JH881866    ELR51876.1    AAEX03007273    FJ687153    ACV81746.1    AKHW03007000    KYO17451.1    LSYS01008398    OPJ69011.1    GL732526    EFX87910.1    AC135486    CH473950    EDM15640.1    AMGL01084099    KL411538    KFR08954.1    GDIP01059466    JAM44249.1    CM001262    EHH20292.1    MKHE01000022    OWK04057.1    GDKW01000913    JAI55682.1    GECL01001240    JAP04884.1    JU326131    AFE69887.1    AQIB01149031    AQIB01149032    AQIB01149033    AQIB01149034    AQIB01149035    AQIB01149036    AQIB01149037    AQIB01149038    AQIB01149039    AQIB01149040    CH933807    EDW12167.1    AL022316    AK314650    BC031838    BC041639    BC042335    BC063537    BC073834    BC121118    BC121119    AY039240    AB179206    BAE02257.1    JU472795    AFH29599.1    MCFN01000331    OXB60389.1    GFFW01002784    JAV42004.1    CCAG010010971    OUUW01000010    SPP86094.1    AGTP01098728    AGTP01098729    AGTP01098730    LMAW01002623    KQK78935.1   

Proteomes

UP000037510    UP000007151    UP000053268    UP000053240    UP000235965    UP000027135    + More
UP000245037    UP000095301    UP000007646    UP000248480    UP000016665    UP000276834    UP000079721    UP000053875    UP000076408    UP000008225    UP000005226    UP000002281    UP000233020    UP000000589    UP000007754    UP000081671    UP000248483    UP000095300    UP000233160    UP000007798    UP000001074    UP000000715    UP000001593    UP000248482    UP000075900    UP000001070    UP000001595    UP000265300    UP000252040    UP000002254    UP000233220    UP000050525    UP000190648    UP000000305    UP000002494    UP000002356    UP000053283    UP000085678    UP000248484    UP000248481    UP000286641    UP000245341    UP000029965    UP000009192    UP000005640    UP000198323    UP000092444    UP000286642    UP000268350    UP000005215    UP000051836    UP000233120    UP000028761    UP000261681    UP000009136    UP000192221   

PRIDE

Q9D1C9    D4AE65    Q9Y3A4   

Pfam

PF17799   RRM_Rrp7        + More
PF12923   RRP7
PF00076   RRM_1
PF17011   DUF5093

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom       
IPR040446   RRP7       
IPR024326   RRP7_C       
IPR040447   RRM_Rrp7       
IPR035979   RBD_domain_sf       
IPR034890   Rrp7A_RRM       
IPR031533   DUF5093       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12294  RRM_Rrp7A

ProteinModelPortal

A0A0L7L2D2   A0A212EJ15   A0A2H1WQS9   A0A2W1C3G6   S4P9F3   A0A194Q166   + More
A0A1E1WRS6   A0A0N1IIV0   A0A2J7PBA4   A0A067QKC0   A0A2P8XKZ2   A0A1B6IQA3   A0A1B6D7Q1   A0A1B6FFG9   A0A1B6KPF2   A0A2R5LH00   A0A1I8N8S0   G3T9E5   A0A2Y9DRX0   U3KAT8   A0A3L8SCW9   A0A1S2ZRN7   A0A0P6FHV3   A0A093GPY4   A0A182YB47   F7IC42   A0A3B5KCP9   F7DM75   A0A2K5E0W6   A0A0N8DF45   Q9D1C9   H0ZH82   A0A0P5MQ27   A0A1S3FUN1   A0A2Y9Q3V3   A0A2I0USC8   A0A1I8P7B7   A0A2K6EW11   B4MUY8   G1PKG8   A0A069DQG8   A0A131Z540   U6CXC6   A0A1Y1NKL1   U3EY11   A0A0N8EBP2   A0A224Z7P5   M3YY02   A7RUG7   A0A2Y9KU52   A0A182RZ97   A0A0P5BHQ8   B4JC28   Q5RA17   K9II52   A0A340WY68   H2P4M5   A0A0P6B968   A0A341AT96   Q3U5H9   L8I6V4   E2RT42   D3U0D6   A0A2K6S2Y8   A0A151LYX6   A0A1V4JA31   E9FWK4   D4AE65   W5QCE3   A0A091W0J8   A0A0P5YGX7   A0A1S3HVD5   G7N438   A0A212CDK5   A0A0P4VKQ8   A0A2Y9ECK0   A0A2Y9GZ94   A0A2Y9PZW0   A0A0V0GA97   A0A3Q7Q580   H9F5H8   A0A2U3XLT3   A0A0D9R028   B4KGH1   Q9Y3A4   Q4R3Q9   H9Z0Y3   A0A226MZF3   A0A250YEM2   A0A1B0FAM8   A0A3Q7UGK8   A0A3B0JVJ8   I3M1P4   A0A0Q3M852   A0A2K6C7S8   A0A096P186   A0A384AP89   A0A3Q1N7N8   A0A1W4UBC9  

PDB

5WYK     E-value=0.0024878,     Score=94

KEGG

101745950    K14545 ribosomal RNA-processing protein 7 | (RefSeq) ribosomal RNA-processing protein 7 homolog A

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0003676   GO:0005737   GO:0001825   GO:0000028   GO:0034456   GO:0006364   GO:0032545   GO:0005654   GO:0000166   GO:0000184   GO:0004674   GO:0016310   GO:0016627   GO:0030145   GO:0015923   GO:0005634   GO:0006260  

PANTHER

PTHR13191  

Length:

262

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00089

Exp number, first 60 AAs:

0.00031

Total prob of N-in:

0.26871

outside

1  -  262

 

 

Pi

211.99111

Theta

169.544679

Tajima's D

0.787478

CLR

15.886083

CSRT

0.588470576471176

Interpretation

Uncertain