Gene

KWMTBOMO06364

Annotation

hypothetical_protein_KGM_15116_[Danaus_plexippus]

Location

Bomo_Chr11(+):5777011-5781021      View in EpiBrowser

Full name

Golgi apparatus membrane protein TVP23 homolog       + More
Uncharacterized Golgi apparatus membrane protein-like protein CG5021      

Location in the cell

PlasmaMembrane   Reliability : 4.905

CDS

ATGATCCATCCAGCTGTGCCACAGGTCCCGCTGCTTGATGATGACACCATCGCATTTGGTGAAGAGGATAATGCTAATAAACAGTTTGTCCATCCCTACATAGTGTTCTTCCACCTGGTGTTCCGATGCTCTGCGATAATTGTGTACATCCTGTGTGGGTGGTTCTCCGACTCATTCATTGCAAGCTTCGTATTAGTCATTCTACTGCTGTCTGCAGACTTCTGGACTGTCAAGAATATTAGTGGTCGGTTACTAGTTGGACTGAGGTGGTGGAACTATGTGGACGACAACGGCAAGTCGCACTGGGTGTTCGAGGCCCGTCAGAGCCGGGTCAACAGGAACGAGAGCCGCCTGTTCTGGATGGGCCTGACGCTGTGCCCCTTGGTCTGGTCCACTTTCTTTATATTCTGCCTTTTCGGACTCAAGTTCAAGTGGATGCTCCTAGTATTGATCGCCTTGACTCTAACAGGCGCTAATCTCTACGGTTACATAAAGTGTAAGTTCGGAGCCAAAGAGAGCCTCAAGTCAGCGACCACAGAGTTCATGAAGCAGCAGATATTCCAAAACGCACCTGCCTTTATGTTCTCGCAACCCACGCCGCCCAACGCTGGCAACACTGGTGTCGTTTGA

Protein

MIHPAVPQVPLLDDDTIAFGEEDNANKQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAGNTGVV

Similarity

Belongs to the TVP23 family.

Keywords

Alternative splicing   Complete proteome   Membrane   Reference proteome   Transmembrane   Transmembrane helix  

Feature

chain  Golgi apparatus membrane protein TVP23 homolog
splice variant  In isoform 2.

Uniprot

A0A2W1BUI4   A0A2H1VCJ3   A0A212EIZ8   A0A0N1IBB5   A0A194PUY5   A0A1E1VZB2   + More
A0A1E1WVC8   A0A1E1W7R5   A0A1I8NTF2   A0A1L8EE15   A0A1I8NTF4   A0A1I8M7P4   A0A0M4EHQ9   A0A0Q9XCG0   A0A1L8EDV1   A0A1L8EAM5   B4L0A2   A0A1I8M7N6   B4J2T0   A0A0Q9XNF7   B4MLB2   A0A3B0J505   A0A0R3P4I0   A0A0C9R0C9   A0A0N8P0U9   A0A0Q9XKV4   A0A1W4V0L5   A0A3B0J9E7   Q2LZQ2   B4H3G8   A0A1W4V118   A0A0K8UAB2   B3M5W8   B4HK55   A0A0Q9WZX6   A0A3B0JW80   A0A0R3P4E6   A0A034V6H6   A0A1W4V0K1   A0A0P8ZUB2   A0A3B0JAF6   A0A0R3P4B9   A0A1W4V103   A0A0P9C392   A0A2A3ENA7   A0A087ZSB1   E2BS17   A0A0M9A848   A0A1Y1L0K5   A0A2P8XK84   A0A151IC71   A0A1A9UHU5   A0A1A9WAY7   E2B1N7   U5ET66   A0A310SQ66   A0A1A9ZLM1   D3TM65   A0A139WLX5   A0A0R1DVJ4   A0A1A9XJU3   A0A1B0B769   A0A1Y1KVQ0   A0A0J9RRV9   B4PFG6   A0A195EJG1   A0A158NJZ2   A0A3L8DRK1   Q8IQC1-3   A0A0Q5U9K9   A0A0J9RS64   A0A0Q9WVT3   F4WXQ0   A0A0K8TNT8   A0A0L7LVF9   A0A195BW09   E4NKP0   J3JTE0   A0A195F559   A0A0Q9XBM6   A0A0R1DUX3   A0A139WLS4   W8C0F3   Q8IQC1-2   H0RND2   B3NBL2   A0A0Q9WTE1   A0A0J9UHM7   A0A0R1DWR2   E1JI84   Q8IQC1   A0A0Q5U2Q2   A0A0J9RRS0   A0A0Q9WU74   A0A0Q5U318   E1JI85   B4LGL2   A0A3B0J5L4   A0A0L7RD62  

Pubmed

28756777    22118469    26354079    25315136    17994087    15632085    + More
25348373    20798317    28004739    29403074    20353571    18362917    19820115    17550304    22936249    21347285    30249741    10731132    12537572    12537569    21719571    26369729    26227816    22516182    23537049    24495485    12537568    12537573    12537574    16110336    17569856    17569867   

EMBL

KZ149897    PZC78708.1    ODYU01001816    SOQ38535.1    AGBW02014545    OWR41455.1    + More
KQ459692    KPJ20439.1    KQ459590    KPI97132.1    GDQN01010986    JAT80068.1    GDQN01000069    JAT90985.1    GDQN01008067    JAT82987.1    GFDG01001924    JAV16875.1    CP012525    ALC43276.1    CH933809    KRG05941.1    GFDG01001918    JAV16881.1    GFDG01002979    JAV15820.1    EDW18048.1    CH916366    EDV96071.1    KRG05943.1    CH963847    EDW73370.1    OUUW01000002    SPP76974.1    CH379069    KRT08025.1    GBYB01006392    JAG76159.1    CH902618    KPU78132.1    KRG05940.1    SPP76973.1    EAL29455.1    CH479206    EDW30908.1    GDHF01028788    JAI23526.1    EDV39658.1    CH480815    EDW40791.1    KRF97752.1    SPP76971.1    KRT08024.1    GAKP01020031    JAC38921.1    KPU78134.1    SPP76972.1    KRT08023.1    KPU78133.1    KZ288204    PBC33180.1    GL450107    EFN81533.1    KQ435714    KOX79190.1    GEZM01074182    JAV64647.1    PYGN01001869    PSN32419.1    KQ978064    KYM97690.1    GL444953    EFN60393.1    GANO01002908    JAB56963.1    KQ760382    OAD60719.1    CCAG010007663    EZ422517    ADD18793.1    KQ971319    KYB28835.1    CM000159    KRK00943.1    JXJN01009415    GEZM01074181    JAV64648.1    CM002912    KMY98523.1    EDW93092.1    KQ978801    KYN28276.1    ADTU01002027    QOIP01000005    RLU23021.1    AE014296    AY071297    CH954178    KQS43389.1    KMY98522.1    CH940647    KRF84400.1    GL888427    EGI60978.1    GDAI01001551    JAI16052.1    JTDY01000053    KOB79151.1    KQ976403    KYM92153.1    BT125837    ADR83722.1    APGK01019727    BT126496    KB740120    KB631607    AEE61460.1    ENN81316.1    ERL84636.1    KQ981805    KYN35531.1    KRG05942.1    KRK00944.1    KYB28834.1    GAMC01004042    JAC02514.1    BT132854    AEV12229.1    EDV50608.1    KRF84399.1    KMY98520.1    KRK00942.1    ACZ94661.1    KQS43391.1    KMY98521.1    KRF84398.1    KQS43390.1    ACZ94662.1    EDW69450.1    SPP76975.1    KQ414615    KOC68735.1   

Proteomes

UP000007151    UP000053240    UP000053268    UP000095300    UP000095301    UP000092553    + More
UP000009192    UP000001070    UP000007798    UP000268350    UP000001819    UP000007801    UP000192221    UP000008744    UP000001292    UP000242457    UP000005203    UP000008237    UP000053105    UP000245037    UP000078542    UP000078200    UP000091820    UP000000311    UP000092445    UP000092444    UP000007266    UP000002282    UP000092443    UP000092460    UP000078492    UP000005205    UP000279307    UP000000803    UP000008711    UP000008792    UP000007755    UP000037510    UP000078540    UP000019118    UP000030742    UP000078541    UP000053825   

PRIDE

Q8IQC1    E4NKP0    H0RND2    E1JI84   

Pfam

PF05832   DUF846        + More
PF00090   TSP_1

Interpro

IPR008564   TVP23-like        + More
IPR000884   TSP1_rpt       
IPR036383   TSP1_rpt_sf       

SUPFAM

SSF82895   SSF82895       

Gene 3D

2.20.100.10    

ProteinModelPortal

A0A2W1BUI4   A0A2H1VCJ3   A0A212EIZ8   A0A0N1IBB5   A0A194PUY5   A0A1E1VZB2   + More
A0A1E1WVC8   A0A1E1W7R5   A0A1I8NTF2   A0A1L8EE15   A0A1I8NTF4   A0A1I8M7P4   A0A0M4EHQ9   A0A0Q9XCG0   A0A1L8EDV1   A0A1L8EAM5   B4L0A2   A0A1I8M7N6   B4J2T0   A0A0Q9XNF7   B4MLB2   A0A3B0J505   A0A0R3P4I0   A0A0C9R0C9   A0A0N8P0U9   A0A0Q9XKV4   A0A1W4V0L5   A0A3B0J9E7   Q2LZQ2   B4H3G8   A0A1W4V118   A0A0K8UAB2   B3M5W8   B4HK55   A0A0Q9WZX6   A0A3B0JW80   A0A0R3P4E6   A0A034V6H6   A0A1W4V0K1   A0A0P8ZUB2   A0A3B0JAF6   A0A0R3P4B9   A0A1W4V103   A0A0P9C392   A0A2A3ENA7   A0A087ZSB1   E2BS17   A0A0M9A848   A0A1Y1L0K5   A0A2P8XK84   A0A151IC71   A0A1A9UHU5   A0A1A9WAY7   E2B1N7   U5ET66   A0A310SQ66   A0A1A9ZLM1   D3TM65   A0A139WLX5   A0A0R1DVJ4   A0A1A9XJU3   A0A1B0B769   A0A1Y1KVQ0   A0A0J9RRV9   B4PFG6   A0A195EJG1   A0A158NJZ2   A0A3L8DRK1   Q8IQC1-3   A0A0Q5U9K9   A0A0J9RS64   A0A0Q9WVT3   F4WXQ0   A0A0K8TNT8   A0A0L7LVF9   A0A195BW09   E4NKP0   J3JTE0   A0A195F559   A0A0Q9XBM6   A0A0R1DUX3   A0A139WLS4   W8C0F3   Q8IQC1-2   H0RND2   B3NBL2   A0A0Q9WTE1   A0A0J9UHM7   A0A0R1DWR2   E1JI84   Q8IQC1   A0A0Q5U2Q2   A0A0J9RRS0   A0A0Q9WU74   A0A0Q5U318   E1JI85   B4LGL2   A0A3B0J5L4   A0A0L7RD62  

KEGG

101746377    no KO assigned | (RefSeq) uncharacterized Golgi apparatus membrane protein-like protein CG5021

GO

GO:0016021   GO:0030173   GO:0016192   GO:0009306   GO:0008270   GO:0003824   GO:0009982   GO:0006744   GO:0016627   GO:0030145   GO:0015923   GO:0005634   GO:0006260  

PANTHER

PTHR13019  

Subcellular location

Membrane  

Length:

209

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

80.2405800000001

Exp number, first 60 AAs:

22.87158

Total prob of N-in:

0.32593

POSSIBLE N-term signal

sequence

outside

1  -  28

TMhelix

29  -  51

inside

52  -  57

TMhelix

58  -  77

outside

78  -  117

TMhelix

118  -  140

inside

141  -  144

TMhelix

145  -  164

outside

165  -  209

 

 

Pi

242.948908

Theta

179.404891

Tajima's D

1.676133

CLR

0.15578

CSRT

0.823858807059647

Interpretation

Uncertain