Gene

KWMTBOMO06351

Annotation

T18197_reverse_transcriptase-like_protein_-_silkworm

Location

Bomo_Chr11(+):5192247-5193751      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2       + More
Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM      

Alternative Name

Retrovirus-related Pol polyprotein from type I retrotransposable element R2
Retrovirus-related Pol polyprotein from type II retrotransposable element R2DM

Location in the cell

Mitochondrial   Reliability : 1.954

CDS

ATGGATGCCGCTTCGGTGATGGTGAAGCGGTGGTGGCATGGCGAGGAAGTCGACCTCCTCGCTCGCACCGAGGCCAGGTCCCTCGCTGAGCGGGGTCAGTGCTCTGGTGGAGACCTTTTTGGCGCGATCTCAGTGGAAGAGATCAAGGCTTCCCGCTTTGACTGGCGGACTTCACCGGGCCCGTATGGTATACGTCAGGGTCAGTGGCGTGCAGTTCCTGTGCACCTGAAGACGGAAATGTTCAATGCTTGGATGGCACAAGGCGAAATACCTGAAATTCTACGGCAGTACCGAATCGTCTTTGTGCCTAAGGTGGAGAGACCAGGTGGACTGGGGGAATATCGACCGATTTCGATCGCGTCTATACCTCTGAGACACTTTCACTCCATCTTGGCCCAGAGGTTGTTGGCTTGCTGCCCCCCTAATGCACGACAGCGTGGATTTATCTGCGCCGACGGTACTTTGGAAAATTCCGCAGTACTGGACGCAGTGCTTGGGGATAGCAGGAGGAAGCTGCGGGAATGTCACGTGGCGGTGCTAGACTTCGTCAAGGCATTCGACACTGTGTCTCACGAAGCACTTGTGGGATTGCTAAGGTCGAGGGGCATGCCCGAACAGTTCTGCGGCTATATTGCTCATCTGTACGATACGGCGTCCACCACCTTAGCCGTTAATAATGTGATGAGCAACCCTGTGAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCAATACTGTTCAACGTGGTGATGGACCTCATCCTAGCTTCCCTGCCGGAGAGGGTCGGGTATAGGTTGGAGATGGAACTTGTGTCCGCTTTGGCTTATGCTGACGACCTAGTCCTGCTTGCGGGGTCAAAGGTAGGGATGCAGAAGTCCATCTCTGCTGTGGACTGTGTTGGTTGGCAGATGGGCCTTCGCCTGAACAGCAGGAAAAGCGCGGTCCTGTCAATGATACTAGATGGCCACCGTAAGAAGCACTATTACCTGACTAAGCGAACCTTCAACATTGGAGATAAGCCGCTCAGGCAGGTGAGTTGTGTCGAGCGGAGGCGATATACTGGTGTTGACTTTGAGCCCTCTGGATGCGTGACGTTAGAGCATAGCATCAGTAATGCTTTGAATGACGTGACAAGGGCACCTCTCAAACCCTAA

Protein

MDAASVMVKRWWHGEEVDLLARTEARSLAERGQCSGGDLFGAISVEEIKASRFDWRTSPGPYGIRQGQWRAVPVHLKTEMFNAWMAQGEIPEILRQYRIVFVPKVERPGGLGEYRPISIASIPLRHFHSILAQRLLACCPPNARQRGFICADGTLENSAVLDAVLGDSRRKLRECHVAVLDFVKAFDTVSHEALVGLLRSRGMPEQFCGYIAHLYDTASTTLAVNNVMSNPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQKSISAVDCVGWQMGLRLNSRKSAVLSMILDGHRKKHYYLTKRTFNIGDKPLRQVSCVERRRYTGVDFEPSGCVTLEHSISNALNDVTRAPLKP

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger   Aspartyl protease   Protease  

Feature

chain  Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Uniprot

V9H052   Q8MY64   Q5K671   A0A023EX97   A0A0J7KIZ7   A0A0C9QX33   + More
A0A023EXT5   A0A023EX96   A0A0J7KIJ3   Q03278   K7JR53   K7JCX5   A0A2S2Q7J7   A0A293LU33   A0A293M998   A0A1A9VZG3   A0A139W9T2   A0A0R4WRV8   A0A1E1X8Y7   A0A224XHH5   A0A0J7NBM9   A0A336N1I0   P16423   B8Y0J4   L7M1A0   A0A0K8S7M2   A0A0A9VQ34   A0A1E1X218   A0A077B0I4   A0A146KWA5   A0A293LGQ3   Q76IP1   A0A0J7KDR5   A0A131YXA3   A0A293LBM6   K7JX42   K7JWL4   O44319   A0A2R7WW67   O44323   O44316   Q76IP0   J9M3R0   Q03279   I7A3V0   I7AEJ4   A0A336LT52   C6F3W3   A0A0J7N6L9   A0A0K8TDX3   A0A183Q4Z8   A0A293MQP9   A0A3B5M253   A0A1E1XIZ0   K7JWP8   A0A1Z5LEY2   K7JYZ8   A0A2R7WRT1   K7JPM5   Q76IN9   A0A2H1BS63   A0A183NB95   I7BCK2   A0A1Z5L9B1   J9LE19   A0A131Z2I9   A0A3Q0S8N0   A0A3Q2YQL5   B7PS21   A0A1B0GQ24   A0A3B1JJF5   A0A1V1H6Q5  

Pubmed

2439905    14999096    25474469    8383793    20075255    18362917    + More
19820115    28503490    1690812    19350401    25576852    25401762    26823975    12949131    26830274    9515960    10331276    9927458    22564473    28528879    25329095    27662593   

EMBL

M16558    AAB59214.1    AB076841    BAC01114.1    AF436853    AAQ04479.1    + More
GBBI01004849    JAC13863.1    LBMM01006940    KMQ90176.1    GBYB01008309    JAG78076.1    GBBI01004906    JAC13806.1    GBBI01004905    JAC13807.1    LBMM01007077    KMQ90064.1    L00950    AAZX01002322    AAZX01010802    AAZX01015897    GGMS01004512    MBY73715.1    GFWV01007503    MAA32233.1    GFWV01012635    MAA37364.1    KQ971997    KYB24671.1    JQ082370    AFM44926.1    GFAC01003453    JAT95735.1    GFTR01008394    JAW08032.1    LBMM01007118    KMQ90015.1    UFQS01003262    UFQT01003262    SSX15424.1    SSX34793.1    X51967    FJ461304    ACJ71597.1    GACK01007407    JAA57627.1    GBRD01016678    JAG49149.1    GBHO01045037    GBHO01045036    JAF98566.1    JAF98567.1    GFAC01005869    JAT93319.1    KJ958674    AIL01110.1    GDHC01017848    JAQ00781.1    GFWV01002964    MAA27694.1    AB097121    BAC82589.1    LBMM01009160    KMQ88341.1    GEDV01005279    JAP83278.1    GFWV01001114    MAA25844.1    AAZX01023288    AAZX01023287    AF015815    AAC34903.1    KK855758    PTY23787.1    AF015819    AAC34906.1    AF015685    AAB94032.1    AB097122    BAC82590.1    ABLF02003433    L00951    JN937619    AFO19998.1    JN937617    AFO19996.1    UFQS01005448    UFQT01005448    SSX16818.1    SSX35999.1    EU854578    ACJ46647.1    KMQ88340.1    GBRD01002048    JAG63773.1    UZAL01048126    VDP85427.1    GFWV01017530    MAA42258.1    GFAC01000014    JAT99174.1    AAZX01010801    AAZX01015898    GFJQ02001120    JAW05850.1    AAZX01010936    KK855289    PTY21830.1    AAZX01024756    AAZX01024918    AB097123    BAC82591.1    KZ442244    PIS78050.1    UZAI01021487    VDP55649.1    JN937618    AFO19997.1    GFJQ02003336    JAW03634.1    ABLF02008889    GEDV01003881    JAP84676.1    ABJB010154799    ABJB010360364    DS776301    EEC09393.1    AJVK01035490    LC155026    BAX24488.1   

Proteomes

UP000036403    UP000002358    UP000091820    UP000007266    UP000007819    UP000050791    + More
UP000261380    UP000050790    UP000277204    UP000261340    UP000264820    UP000001555    UP000092462    UP000018467   

PRIDE

V9H052    Q8MY64    Q5K671    Q03278    P16423   

Pfam

PF00078   RVT_1        + More
PF00096   zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR000477   RT_dom       
IPR036236   Znf_C2H2_sf       
IPR001005   SANT/Myb       

SUPFAM

SSF57667   SSF57667       

CDD

cd00167  SANT

ProteinModelPortal

V9H052   Q8MY64   Q5K671   A0A023EX97   A0A0J7KIZ7   A0A0C9QX33   + More
A0A023EXT5   A0A023EX96   A0A0J7KIJ3   Q03278   K7JR53   K7JCX5   A0A2S2Q7J7   A0A293LU33   A0A293M998   A0A1A9VZG3   A0A139W9T2   A0A0R4WRV8   A0A1E1X8Y7   A0A224XHH5   A0A0J7NBM9   A0A336N1I0   P16423   B8Y0J4   L7M1A0   A0A0K8S7M2   A0A0A9VQ34   A0A1E1X218   A0A077B0I4   A0A146KWA5   A0A293LGQ3   Q76IP1   A0A0J7KDR5   A0A131YXA3   A0A293LBM6   K7JX42   K7JWL4   O44319   A0A2R7WW67   O44323   O44316   Q76IP0   J9M3R0   Q03279   I7A3V0   I7AEJ4   A0A336LT52   C6F3W3   A0A0J7N6L9   A0A0K8TDX3   A0A183Q4Z8   A0A293MQP9   A0A3B5M253   A0A1E1XIZ0   K7JWP8   A0A1Z5LEY2   K7JYZ8   A0A2R7WRT1   K7JPM5   Q76IN9   A0A2H1BS63   A0A183NB95   I7BCK2   A0A1Z5L9B1   J9LE19   A0A131Z2I9   A0A3Q0S8N0   A0A3Q2YQL5   B7PS21   A0A1B0GQ24   A0A3B1JJF5   A0A1V1H6Q5  

PDB

6AR3     E-value=0.0132027,     Score=90

KEGG

NA   

GO

GO:0003964   GO:0003676   GO:0004519   GO:0046872   GO:0004190  

Length:

386

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0336500000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02741

outside

1  -  386

 

 

Pi

0.685705

Theta

1.190988

Tajima's D

-0.895382

CLR

23.117561

CSRT

0.167791610419479

Interpretation

Uncertain