Silkworm Genome Informatics Database

Gene

KWMTBOMO06348

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr11(-):5136985-5138466 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 1.663

CDS

ATGGAGCGAATAATAAATATTCAACTCCTGAAGTATCTTGAGGATCGCCAGCTGATCAGTGACCGACAGTACGGCTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTGTCGAAGCTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGATTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTTGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTAAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCCAAGAAGGACCCCTTTGTCATGGCGCCACAATTCCAAGGAATATCCCTGCAACCTTCCAAGAGTATCGGGATACTTGGGGTCGACATTTCGAACGACGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGAGCCAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACTAGCTTCTTCCATTTGACTCCCTACAGAAGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCTCGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGATTTATTCGAGATGA

Protein

MERIINIQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIARFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSWSVVQERRSKLVSKVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGISLQPSKSIGILGVDISNDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGAKGFCFIKHKSGLAWSTAPISGPGLPNTSFFHLTPYRRGPFGLSIIPFSRIVWNLWVCGGTSVPSVFCTVCSMGSALRIYSR

Cofactor

pyridoxal 5'-phosphate

Uniprot

Q6UV17 B9WPT7 A0A3S2L424 A0A3S2NTH0 A0A3S2PCY7 A0A3S2NMS5 + More
A0A3S2LQP1 A0A3S2LP03 A0A3D5S1K1

Pubmed

30148503

EMBL

AY359886 AAQ57129.1 FM995623 CAX36787.1 RSAL01000171 RVE45150.1 + More
RSAL01000090 RVE48098.1 RSAL01000095 RVE47834.1 RSAL01000002 RVE54942.1 RSAL01000422 RVE41792.1 RSAL01002067 RVE40593.1 DPOC01000269 HCX22453.1

Proteomes

UP000283053

PRIDE

Q6UV17

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00282   Pyridoxal_deC
PF04939   RRS1
PF03081   Exo70
PF01585   G-patch

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR015424   PyrdxlP-dep_Trfase
IPR002129   PyrdxlP-dep_de-COase
IPR021115   Pyridoxal-P_BS
IPR015421   PyrdxlP-dep_Trfase_major
IPR015422   PyrdxlP-dep_Trfase_dom1
IPR010977   Aromatic_deC
IPR007023   Ribosom_reg
IPR016159   Cullin_repeat-like_dom_sf
IPR004140   Exo70
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034653   SPF45_RRM
IPR003954   RRM_dom_euk
IPR000467   G_patch_dom
IPR040052   RBM17
IPR035979   RBD_domain_sf

SUPFAM

SSF56219   SSF56219        + More
SSF53383   SSF53383
SSF74788   SSF74788
SSF54928   SSF54928

Gene 3D

3.60.10.10 3.40.640.10 3.90.1150.10 3.30.70.330

CDD

cd12647 RRM_UHM_SPF45

ProteinModelPortal

Q6UV17 B9WPT7 A0A3S2L424 A0A3S2NTH0 A0A3S2PCY7 A0A3S2NMS5 + More
A0A3S2LQP1 A0A3S2LP03 A0A3D5S1K1

PDB

6AR3 E-value=2.43759e-05, Score=113

KEGG

101736731 no KO assigned | (RefSeq) uncharacterized LOC101736731

GO

GO:0003964 GO:0004519 GO:0003723

PANTHER

PTHR17602 PTHR13288

Length:

350

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

10.08303

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02020

outside

1 - 350

Pi

146.298294

Theta

53.330367

Tajima's D

2.574622

CLR

0.720598

CSRT

0.952352382380881

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree