Gene

KWMTBOMO06345  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011987

Annotation

PREDICTED:_RNA_pseudouridylate_synthase_domain-containing_protein_1-like_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr11(-):5088005-5094936      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.106 Nuclear   Reliability : 1.692

CDS

ATGGCTGTGGAAATTCTATTTGAAAACTCTGATTATTTAATCGTGAACAAGCCTTATGACATGTATATCAATTCTGATGACGAAAACGAAAAGAACACAGTGGCTTACCAAATAGCGCGTTGCGATTCTCATCTGTCAACGTCATCGCAACCTTTACATTTCGTCCAACGATTGGACTACGCCACGAGTGGCGTGCTCTGCATGGCCAAGAGTCGGCCAGCTGCGGCCAGCGCTGGCAAAGCGTTCGAAAAGAGATTGACCAGGAAATACTACCTGGCGATCGTCCGCGGACATGTTGGCTTTGAGCTGGCCGATGTTGATTATGGCGTTGGCGCAGACCCTGAAACCCTGCACTCGAATCACAAGATGCTGGCGCGAACATCTTCATCTCAAACGATACAAGTTCGCAGCGCTCAGACCAGGATGCTGCTCTTGGAGACGGGCTGGTACCAACGGAGTCCTGTGTCTGTACTCCTACTGAAGCCTATAACTGGTCGTCGCCATCAGCTGAGGGTCCACTGTAACGCAATAGGCCACACTATACTGGGCGATTACACTTACAGCGACAGGTCGGACTGTTCTCCACACCGCATGTTTCTCCACGCTTCCAGGCTAGTTTTACCAGTCGACAAGGAAGTTATCGACGTTCAAACCAAAACCCCTTACTTTTCCGATGAAGGCTTCCTCCAGCACTGGAAGTCTGATCGGGTAGCGTACCCTTACAAAACCAAAGGCGACTTCAATGATGTATGTGACGTGATCGATAAGTCATATGTGCTGGGCGTCAACTATAAAATGTATAATTGCACCAATTAA

Protein

MAVEILFENSDYLIVNKPYDMYINSDDENEKNTVAYQIARCDSHLSTSSQPLHFVQRLDYATSGVLCMAKSRPAAASAGKAFEKRLTRKYYLAIVRGHVGFELADVDYGVGADPETLHSNHKMLARTSSSQTIQVRSAQTRMLLLETGWYQRSPVSVLLLKPITGRRHQLRVHCNAIGHTILGDYTYSDRSDCSPHRMFLHASRLVLPVDKEVIDVQTKTPYFSDEGFLQHWKSDRVAYPYKTKGDFNDVCDVIDKSYVLGVNYKMYNCTN

Uniprot

H9JR27   A0A3S2LS15   A0A2A4K5H1   A0A194Q264   A0A212FH41   A0A2H1V5J7   + More
A0A2Z5U7A8   A0A2W1BCP9   A0A1B6E762   E9HPA1   A0A067QYS9   A0A1B6JPT6   A0A1B6G9A7   A0A0P6E1Y5   A0A0P5NER4   A0A0P5J4E2   A0A0N8AVL8   A0A0P5RHR0   A0A0P6ELN9   A0A2R7VWS0   A0A0P6HBX8   A0A2J7R5A5   A0A1B6L096   A0A0P5E194   T1JGR8   A0A0P5XUN6   A0A164RTJ5   A0A0P5WYQ3   A0A0P6B974   E2CAE1   A0A232F8C0   A0A023F456   A0A154PU29   A0A0L7RIS3   Q171X7   A0A182H0K9   K7IPA2   A0A1Q3G2M1   A0A1Q3G2K2   W5JBZ9   A0A2M4CSY2   A0A0N0BIR2   A0A182NCU1   A0A182QSJ8   A0A182PLG2   A0A182SWU8   A0A182JC68   A0A182UTE8   A0A182RI33   A0A182W376   A0A026X0M3   A0A182KZT6   A0A182XF59   A0A182HVN0   A0A151XCA4   A0A226EKL8   A0A182MUS0   A0A2G8KGU7   C3ZJW0   A0A2S2NLP3   A0A195F1A7   F4X6M2   A0A2H8TVG4   A0A3R7M658   A0A182JZ78   Q7PQ70   A0A195B2K9   A0A182YQE8   A0A158NLC6   E9IZ73   A0A195E7H1   A0A1S3IXX3   A0A0C9RL97   D6W746   A0A146KMY7   A0A146LKN6   A0A0A9XYW7   A0A146LRY7   A0A0P5T7Y6   A0A0K8S7L7   A0A0P5TG43   A0A2P6K0P7   V5H7G3   B7P2L1   A0A182FAE6   E2AT95   T1FYI1   A0A1S3DBI3   A0A087UID3   R7UFN6   A0A2A3EA45   N6UKF4   A0A091ERN0   A0A0L8IDN0  

Pubmed

19121390    26354079    22118469    28756777    21292972    24845553    + More
20798317    28648823    25474469    17510324    26483478    20075255    20920257    23761445    24508170    30249741    20966253    29023486    18563158    21719571    12364791    14747013    17210077    25244985    21347285    21282665    18362917    19820115    26823975    25401762    25765539    23254933    23537049   

EMBL

BABH01028682    BABH01028683    RSAL01000312    RVE42661.1    NWSH01000138    PCG79168.1    + More
KQ459564    KPI99631.1    AGBW02008548    OWR53052.1    ODYU01000772    SOQ36069.1    AP017511    BBB06829.1    KZ150211    PZC72191.1    GEDC01003527    JAS33771.1    GL732704    EFX66443.1    KK852818    KDR15682.1    GECU01006438    JAT01269.1    GECZ01010744    JAS59025.1    GDIQ01069376    JAN25361.1    GDIQ01165840    JAK85885.1    GDIQ01207216    JAK44509.1    GDIQ01238515    JAK13210.1    GDIQ01119797    JAL31929.1    GDIQ01067967    JAN26770.1    KK854135    PTY11912.1    GDIQ01022368    JAN72369.1    NEVH01007392    PNF36000.1    GEBQ01023457    GEBQ01023053    JAT16520.1    JAT16924.1    GDIP01149346    JAJ74056.1    JH432211    GDIP01067068    JAM36647.1    LRGB01002140    KZS08928.1    GDIP01079660    JAM24055.1    GDIP01018510    JAM85205.1    GL453975    EFN75107.1    NNAY01000743    OXU26730.1    GBBI01002933    JAC15779.1    KQ435119    KZC14710.1    KQ414583    KOC70734.1    CH477443    EAT40809.1    JXUM01101465    JXUM01101466    KQ564651    KXJ71955.1    GFDL01001056    JAV33989.1    GFDL01001015    JAV34030.1    ADMH02001950    ETN60359.1    GGFL01004259    MBW68437.1    KQ435727    KOX77922.1    AXCN02001206    KK107063    QOIP01000005    EZA60949.1    RLU22510.1    APCN01005806    KQ982314    KYQ58011.1    LNIX01000003    OXA57291.1    AXCM01000387    MRZV01000594    PIK47216.1    GG666633    EEN47245.1    GGMR01005484    MBY18103.1    KQ981864    KYN34355.1    GL888818    EGI57804.1    GFXV01006449    MBW18254.1    QCYY01001950    ROT74030.1    AAAB01008898    EAA09234.6    KQ976662    KYM78439.1    ADTU01019320    GL767119    EFZ14121.1    KQ979568    KYN20784.1    GBYB01008129    GBYB01014112    JAG77896.1    JAG83879.1    KQ971307    EFA11504.2    GDHC01021783    JAP96845.1    GDHC01010101    JAQ08528.1    GBHO01021114    JAG22490.1    GDHC01009107    JAQ09522.1    GDIP01136156    JAL67558.1    GBRD01016683    JAG49144.1    GDIP01128108    JAL75606.1    MWRG01049905    PRD19904.1    GANP01005418    JAB79050.1    ABJB010144409    DS622764    EEC00833.1    GL442545    EFN63340.1    AMQM01000987    KB096742    ESO02682.1    KK119940    KFM77122.1    AMQN01009004    KB304376    ELU02087.1    KZ288310    PBC28597.1    APGK01020355    KB740193    KB631669    ENN81116.1    ERL85230.1    KK718885    KFO58959.1    KQ415935    KOF99582.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053268    UP000007151    UP000000305    + More
UP000027135    UP000235965    UP000076858    UP000008237    UP000215335    UP000076502    UP000053825    UP000008820    UP000069940    UP000249989    UP000002358    UP000000673    UP000053105    UP000075884    UP000075886    UP000075885    UP000075901    UP000075880    UP000075903    UP000075900    UP000075920    UP000053097    UP000279307    UP000075882    UP000076407    UP000075840    UP000075809    UP000198287    UP000075883    UP000230750    UP000001554    UP000078541    UP000007755    UP000283509    UP000075881    UP000007062    UP000078540    UP000076408    UP000005205    UP000078492    UP000085678    UP000007266    UP000001555    UP000069272    UP000000311    UP000015101    UP000079169    UP000054359    UP000014760    UP000242457    UP000019118    UP000030742    UP000052976    UP000053454   

PRIDE

H9JR27   

Pfam

PF00849   PseudoU_synth_2

Interpro

IPR020103   PsdUridine_synth_cat_dom_sf        + More
IPR006145   PsdUridine_synth_RsuA/RluA       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR006224   PsdUridine_synth_RluC/D_CS       

SUPFAM

SSF55120   SSF55120        + More
SSF57667   SSF57667       

CDD

cd02869  PseudoU_synth_RluCD_like

ProteinModelPortal

H9JR27   A0A3S2LS15   A0A2A4K5H1   A0A194Q264   A0A212FH41   A0A2H1V5J7   + More
A0A2Z5U7A8   A0A2W1BCP9   A0A1B6E762   E9HPA1   A0A067QYS9   A0A1B6JPT6   A0A1B6G9A7   A0A0P6E1Y5   A0A0P5NER4   A0A0P5J4E2   A0A0N8AVL8   A0A0P5RHR0   A0A0P6ELN9   A0A2R7VWS0   A0A0P6HBX8   A0A2J7R5A5   A0A1B6L096   A0A0P5E194   T1JGR8   A0A0P5XUN6   A0A164RTJ5   A0A0P5WYQ3   A0A0P6B974   E2CAE1   A0A232F8C0   A0A023F456   A0A154PU29   A0A0L7RIS3   Q171X7   A0A182H0K9   K7IPA2   A0A1Q3G2M1   A0A1Q3G2K2   W5JBZ9   A0A2M4CSY2   A0A0N0BIR2   A0A182NCU1   A0A182QSJ8   A0A182PLG2   A0A182SWU8   A0A182JC68   A0A182UTE8   A0A182RI33   A0A182W376   A0A026X0M3   A0A182KZT6   A0A182XF59   A0A182HVN0   A0A151XCA4   A0A226EKL8   A0A182MUS0   A0A2G8KGU7   C3ZJW0   A0A2S2NLP3   A0A195F1A7   F4X6M2   A0A2H8TVG4   A0A3R7M658   A0A182JZ78   Q7PQ70   A0A195B2K9   A0A182YQE8   A0A158NLC6   E9IZ73   A0A195E7H1   A0A1S3IXX3   A0A0C9RL97   D6W746   A0A146KMY7   A0A146LKN6   A0A0A9XYW7   A0A146LRY7   A0A0P5T7Y6   A0A0K8S7L7   A0A0P5TG43   A0A2P6K0P7   V5H7G3   B7P2L1   A0A182FAE6   E2AT95   T1FYI1   A0A1S3DBI3   A0A087UID3   R7UFN6   A0A2A3EA45   N6UKF4   A0A091ERN0   A0A0L8IDN0  

PDB

5VBB     E-value=1.82836e-34,     Score=363

KEGG

101735634    no KO assigned | (RefSeq) RNA pseudouridylate synthase domain-containing protein 1-like

GO

GO:0003723   GO:0009982   GO:0001522   GO:0016021   GO:0003796   GO:0009451   GO:0006744   GO:0016627   GO:0030145   GO:0015923   GO:0005634   GO:0006260  

Length:

271

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00198

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.01777

outside

1  -  271

 

 

Pi

234.373678

Theta

185.849848

Tajima's D

0.133839

CLR

0.429227

CSRT

0.407929603519824

Interpretation

Uncertain