Silkworm Genome Informatics Database

Gene

KWMTBOMO06339

Pre Gene Modal

BGIBMGA011906

Annotation

PREDICTED:_zinc_finger_protein_ZFP69B-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr11(+):5040827-5050177 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Extracellular Reliability : 1.62 Nuclear Reliability : 2.314

CDS

ATGAAGAAGCACGACCCGTCCTCGGGCAGCCTGGTGTGCGATATCTGCAAAGTCCGCTGCAAAGACAACAACGCATACTCGGCGCACCGCCGCCGGCACCGCGTCAGATGGCGCTGCCGCGCGTGTCTGTCGGCGTGGTCCCGCGCCGCCGTGGGGGCCGACCACTGCGCGAGGGCGCACGGGGCCCCGCCCCCCACCCACACCTGCCGCGTCTGCGGACGCACCGAGACGTCGCTGGGCCGACTGCGCAGCCACGTGCAGGAGCACGCCGAGCGGCAGCGCTGCGAGCTGTGCGGGAAGACCTTCCGGGACAAGACCTCGCTGAGGACGCATCTCTTGTAA

Protein

MKKHDPSSGSLVCDICKVRCKDNNAYSAHRRRHRVRWRCRACLSAWSRAAVGADHCARAHGAPPPTHTCRVCGRTETSLGRLRSHVQEHAERQRCELCGKTFRDKTSLRTHLL

Uniprot

A0A212FHB4 A0A2A4JEY0 A0A3S2TL49 S4PJM9 A0A0N1IGS5 A0A2W1BCQ2 + More
A0A194Q233 A0A2A4K7F8 A0A194Q4K3 A0A2W1BG14 A0A194QRA1 A0A2A4JDA4

Pubmed

22118469 23622113 26354079 28756777

EMBL

AGBW02008515 OWR53125.1 NWSH01001784 PCG70144.1 RSAL01000071 RVE49091.1 + More
GAIX01004880 JAA87680.1 KQ460400 KPJ14980.1 KZ150132 PZC73042.1 KQ459564 KPI99627.1 NWSH01000089 PCG79703.1 KQ459463 KPJ00468.1 KZ150164 PZC72665.1 KQ461198 KPJ06061.1 NWSH01001806 PCG70065.1

Proteomes

UP000007151 UP000218220 UP000283053 UP000053240 UP000053268

Pfam

PF00096 zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR012934   Znf_AD

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A212FHB4 A0A2A4JEY0 A0A3S2TL49 S4PJM9 A0A0N1IGS5 A0A2W1BCQ2 + More
A0A194Q233 A0A2A4K7F8 A0A194Q4K3 A0A2W1BG14 A0A194QRA1 A0A2A4JDA4

PDB

5YJ3 E-value=0.0506115, Score=78

KEGG

101736035 no KO assigned | (RefSeq) zinc finger protein 287-like

GO

GO:0003676 GO:0008270 GO:0005634 GO:0046872 GO:0005622 GO:0006470 GO:0006744 GO:0016627 GO:0030145 GO:0015923 GO:0006260

Length:

113

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00076

Exp number, first 60 AAs:

0.00074

Total prob of N-in:

0.23690

outside

1 - 113

Pi

285.992175

Theta

164.656358

Tajima's D

1.816081

CLR

0.555529

CSRT

0.851357432128394

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics