SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06337
Pre Gene Modal
BGIBMGA011904
Annotation
PREDICTED:_extensin-2-like_[Bombyx_mori]
Location
Bomo_Chr11(+):5024457-5033032      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.372
 

Sequence

CDS
ATGATGTTCTGGTGCCTGCTGTTAACGTTTGTCTCAGCGGAAGAGCAGCCTTTGGGGTTGGTCTCCAAGGACACGGAGCACGATTTAATAGCTGAAGCGACACATTCCGGTGCTCAAGCCCAGAAGAGGGAGGCTGGCCTGTCGAACTCCTACGGGGAGCCCCTCCCGCCGGACGCGTACGGACCTCCGAGAGATACGTCCGACCTGATTTCAGATCTCCAGCTGCCGGTTCCCGTGTACGGCGTCCCTCAGCAAAACGACTTCCTGCAAGAAACACCGCCCGGAGCGTACGGGCCCCCGTCCCCCGTCGTGTTCCCGAGCCAACACTACGAAGGACCCCCGCCACCAATTTCCAAACCGAAGCCAATATATGGACCCCCCAAGTTTCATGGACCGCCCAAGAACTTTGGTCCCCCGAAACTAAGCTACGGGCCCCCCAAGTCGTACTACGGACCTCCGAAGAAGTTATACGGACCCCCTAAGCAAGGGCTCCCTAAGCCTTCTTATGGTACACCTTTCAAAGCGCCCAAAGTGCTGTCCAAACCGTACCCAAAGCCAGTATACGGTCCACCAAAACCAGTGTACGGCCCGCCAAAGCCAATAAGATCAACTTACGGTCCCCCATTACCAAGTGTACCATTAGAAGCCCCGCCTCTTCCTCAACCCACTATCACCACAGTTGAAACCACTATTGGCCTGGGGGGCTTTGGATCAAGCCACGCTGTAGACGTTGGCGCCAACTTTGGCACATTTGGCGACTCCAGTCTGAATTTAGACTTGAATCTACCCGCTCCTATATACGGCACTCCAATCGTGTCGCTACCTTTGGATGTTGGCAACGAAAACCACTTCCCGTCAGAGACGTACGGACCGCCGGGCCACGCGCTCGGCCCAATCGGACCTAACGACCAGGTCGTGGTACAAGACATAGCGGACGTCGGACACTACGGGCCGCCGCAACCCGACCCAAACCCGCGACCCCCACACCCAGGCATCCCCGCTCCACCGACGCCCCCGCACGTCCTCTACGACGGCTGGAAGCCAATACCTGGAGTATCTAAACCAGTTGGACACGTCGAAGAGACTGTCTTCCAAAACGTCGGTGTCAGCGATCATTACGGCCTCCCGCCGCCCCCCGTGCACGAGATACACGTGAACGAGCAGCAACTACCCGTCCTCGACCAAGGTCCTCACTTCGCGCATCAGATATCAACTGGCTACTCCAGCGTACATCAAGACGCGCTCTCTAACGTCGACCTCAATTCGCTTGTTGGTGGAGATTCGAACCACATCGACCAGTCGAAGACAGTGTTCGAAGCTCACTATACCGAGAACCATGATCCACAGGCTGACTTAGCTTTCATCCAATCGTCCATACCCAGTCAGAGACCGTTTGATTCTTACGGCGCTCCGCCATTGGACTCGCTCTCTGGTGGACCCTACCCTCCGTCTGTAAGGCAACAAGGAGCCAAAGGCCTGATCCCGCCTTCAGGAGTGTACGGCGTGCCACCGGGCAGTCAATATGGTGCTCCACCGAAACCGCCACCATCCAATTTGCCCATCCCGTACGGCAGCTACTCAGGAGGTGGTCACTCCATCCACACCGGCTTGAATACTCCTAAAAAGCCCATTAAGTTCAGAGATTCCGTTCCTGCAGGCTTACTGGAGCACGTGGGTCAGACCACACACGGCAAGGACACCCTGACGATCGACAATCTTACCCAGGGACCGGCGTACCTACCGCCGCCCATCAGAGACGCCAAAGAGGTCAATCATCACACATCATTCGGCATAAATCTATCTATAGAACCAACGGATTTGTACAGCCTTCCTCACGCGGGAAATCCCCTCAACTTTCAGGCCCCACAACCCAGTAACCTCTACGGGTCCCCCATCGACTCTTACTCAGCTCCGTTCTTGACTGTGGCAGATCACACAGCGTCCGGATCCAACACTAACGCGGTCACAACGACCATAGACGGCGCGCTTCTAGCAAACCTCTCCAATTTGGAGGCTGCAGCGATTCTAAAGCACTGCCCCTATCACGAAGCTATTTTAAAAGCAGCACAATACGGAGAGAAAATCCCTGTCGAACTGGCCACGAAGTACATGGCCAGTCTGAAGTCCCTGGGCAGCACGCTCTCCAAGAATCAGTTCACGAGCTATCAGAATTCAGAAGCCGTTCACAGTTCGAGGGATCAGTTAGGGTCAGCGCACACGGCCGTCCACTCTGTACTGCCGAACAACGTCCGTCACGACGACAAAGTCAAAGGTAAATCTTTGAGAGAAATTCAGAAACAGAGTCACAAAGGACAGAATTTACAGTTCGTTTCCGATCAAATTCAAAAGACATCGGACAAAATCAAGTCTCTGAACGAGGAAGCGAAGATCTTGCAACAGCAGATCGTTCATAACAATCAGAATTTGAACCAGGGACAATTTTCAAGTCAAGCCACGCAGTTCTCGAACGATTTCACTGGTAATCAAGCTACTTATGCTGTTCAAATACAATCCTCTGTGGGTGGCAAAGGCAAGGATCCGAGCATACCGCACGAACAGCTGCTGAATGAAGGGCTGTTACAGAGTATACTTCAAGCCATAGAGCAGCCCCGAGATCCGAAACAGCAGTCTGTGCAAATTCGTCAACAACCTAGCAACACTGACGATGGCCTGGTGTTGCCAGTCGGCTACGAGCCAGTGGACAGGACCAAAGAAATACAAAGCTCAAATAGGGACATTAAACAGATCTTGCACAGCGAAATAGTGACTAGGGGCGATGTTCCCGATTGCGAATTGAAAGCCGATGGATCCGTGAACCACGAAGTAGTAGTTCCAGCGCCATTAGAAAGAGTCAAACCGGTGGAGGAAGTAAACGATAATGATGTCGCAATATTTTTCGATGAAAAACCGAAAAACAACGAGCCAGTTACAGAAATATCCGTAGCGACCAGTATTAGTGAAGACTCAGATGAAAATGGCAGTAAAACTCGTCAATTCGGTGAGAAGATCAAAGAGGCGTAA
Protein
MMFWCLLLTFVSAEEQPLGLVSKDTEHDLIAEATHSGAQAQKREAGLSNSYGEPLPPDAYGPPRDTSDLISDLQLPVPVYGVPQQNDFLQETPPGAYGPPSPVVFPSQHYEGPPPPISKPKPIYGPPKFHGPPKNFGPPKLSYGPPKSYYGPPKKLYGPPKQGLPKPSYGTPFKAPKVLSKPYPKPVYGPPKPVYGPPKPIRSTYGPPLPSVPLEAPPLPQPTITTVETTIGLGGFGSSHAVDVGANFGTFGDSSLNLDLNLPAPIYGTPIVSLPLDVGNENHFPSETYGPPGHALGPIGPNDQVVVQDIADVGHYGPPQPDPNPRPPHPGIPAPPTPPHVLYDGWKPIPGVSKPVGHVEETVFQNVGVSDHYGLPPPPVHEIHVNEQQLPVLDQGPHFAHQISTGYSSVHQDALSNVDLNSLVGGDSNHIDQSKTVFEAHYTENHDPQADLAFIQSSIPSQRPFDSYGAPPLDSLSGGPYPPSVRQQGAKGLIPPSGVYGVPPGSQYGAPPKPPPSNLPIPYGSYSGGGHSIHTGLNTPKKPIKFRDSVPAGLLEHVGQTTHGKDTLTIDNLTQGPAYLPPPIRDAKEVNHHTSFGINLSIEPTDLYSLPHAGNPLNFQAPQPSNLYGSPIDSYSAPFLTVADHTASGSNTNAVTTTIDGALLANLSNLEAAAILKHCPYHEAILKAAQYGEKIPVELATKYMASLKSLGSTLSKNQFTSYQNSEAVHSSRDQLGSAHTAVHSVLPNNVRHDDKVKGKSLREIQKQSHKGQNLQFVSDQIQKTSDKIKSLNEEAKILQQQIVHNNQNLNQGQFSSQATQFSNDFTGNQATYAVQIQSSVGGKGKDPSIPHEQLLNEGLLQSILQAIEQPRDPKQQSVQIRQQPSNTDDGLVLPVGYEPVDRTKEIQSSNRDIKQILHSEIVTRGDVPDCELKADGSVNHEVVVPAPLERVKPVEEVNDNDVAIFFDEKPKNNEPVTEISVATSISEDSDENGSKTRQFGEKIKEA

Summary

Uniprot
A0A0N0PDB9   A0A194Q259   I4DJ08   A0A212FHB9   A0A3S2LL75   A0A0L7L2F8   + More
A0A2Z5U7B6  
Pubmed
26354079    22651552    22118469    26227816   
EMBL
KQ460400    KPJ14979.1    KQ459564    KPI99626.1    AK401276    BAM17898.1    + More
AGBW02008515    OWR53126.1    RSAL01000071    RVE49093.1    JTDY01003406    KOB69610.1    AP017511    BBB06834.1   
Proteomes
UP000053240    UP000053268    UP000007151    UP000283053    UP000037510   
ProteinModelPortal
A0A0N0PDB9   A0A194Q259   I4DJ08   A0A212FHB9   A0A3S2LL75   A0A0L7L2F8   + More
A0A2Z5U7B6  

Ontologies

KEGG
101740315    no KO assigned | (RefSeq) extensin-2-like
GO

Topology

SignalP
Position:   1 - 13,         Likelihood:  0.973582
 
 
Length:
1006
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00017
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.00001
outside
1  -  1006
 
 

Population Genetic Test Statistics

Pi
252.942425
Theta
181.473564
Tajima's D
1.047031
CLR
0.509843
CSRT
0.67741612919354
Interpretation
Uncertain
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