SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06335
Pre Gene Modal
BGIBMGA011902
Annotation
PREDICTED:_cell_division_cycle_25_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr11(+):4942573-4982954      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.618
 

Sequence

CDS
ATGTACCCCCACTCGCTTAGCTTCGACCAAAGTCCTGGCCCCTCGAAGCGCAGGATCCTCTCAGACATACAAAACTCTATACTCAGCTCACCAATTAACTACAAACCTACTTCACCTCTGATAGAAAGATTAAAGTCACCAGAGACCAGAAACTCACCTCTAAAAACCATGACAAACTCACCAAAATCCCAGAGATTAACTCTCACTCCGAAAACTTCACAAGAAACACCAAAAATCAGACATACGCCAGTCACACCCAAAGTAAGATCACCGCTATCATATGAAATAGCTGAGAACATTCTGGATAGGCCTTCACCCCTTACTAGTCGGAGTCTGAGAGGCACATTAAAGATTAAAGAAGTATTAGAAGATAGATCTTGGTATAAACGATCCAACAAGGAGAACTGTGAGCCAATGATGGCAGAAACTTTCATGAAATTTGATAATGAAGAAGATGCGAGAGACTGTTCGTTTGGTGGAAGCTTCAATAACTCAGGGGAGACGAGTTGGGGTAATGCTAAGTTGGACTTCACCAATTTGCAGTCATCCTTCCAAACGGAAATAAAAGATACATTCGTACCTCAAAAAGATGCGGAACCAGTTGAGGAATTGGATATTTTACAAGATTTAGAACAAGAATTTGACTCTGATAATTTTGATACGTGCACGAAATACGAAATAATATCGACTGACAGTCCCGATATTATATCCAGAGGGCGGGTGTCCAGCGCCAGGAAGGTCACCGCCCGGAATTTTGTGTTCGGTGCTCCCCTAGCTGAAAACGAACCTTCCACATCCTTCAACCGTTCCAATTCAGCCAACAGAATGCTCAATTTTGACGACGAAGACTTCGAATTCACCTCACCGGCTTTAGGAAAGAGAGTATCAGTGAAGAAATCTTTAAAATTCACAGAAACTACGACAAATAATCCACTGAAACATGAGATAAGCGATTCTAGTGTTAGTACTAACGGCTCTCCCACTAAACTAAGGCTATACACATCCGAGTCCACCACCTCGATGGAGAGCGGCTTTGTTTCAGAACTAGAAGAACCGTTCCTCGAGATTGAAGAGTCCAACTCACCAAAGCTAGCTAATATCACTGATTTATTATCTGGACAGATAAAGAACAATATTGTTATGACAAAGAAAATTAATTTGAGCAGGAGTTTGAGTTTTAATCCAGAAAGAGCTTCTCTCTTTTCCATCAAAGAGAGTCCCGAAAAGCGATGTAGGATATTGGAGGAGAGCGAAACTGACTCTGCCTGTAAAAGAAGGAAGGAAGATTTAAACAACAGTGGAAAGATCCAGAGGCCCATATTACAAAGAGCTTTCTCTGAAAATAATGCGTCGATAATGTCTGCTTTAGCGAGATCTGCCATAGAACCAGATCTAATAGGAGATTTCAGTCAGCCATTTGCTCTGCCACTCATCAGCGGAGATCATTCAGATCTGAAGAGCATATCCTGTGATACGTTGGCTGAACTGATCCGAGGAGCTTACCAGAGCAGCATCAGCGATTACCAAGTGATCGACTGCCGCTACCCGTATGAGTTCGCGGGCGGACACGTGGCCGGCGCACACAACCTGTTCACCCCCGCGCACATCCTCGCCCTCGTCCACGAGCCGCTGTCCCCGAGGAAATCCGACGGGAAGCGGAGCATCCTGGTCTTCCACTGCGAATTCTCATTGGAACGGGGACCTAAACTGTCCCGCTTCCTGCGCTCGTCGGACCGCGAGAGCAACAAGGAGCGCTACCCGGCGCTGCGCTTCCCCGAGGTGTACCTGCTGCACGAGGGCTACCGGCGCTTCTACCAGAAGTACCCCGAGCTGTGCTCCCCCACCGGCTACACGGCCATGCTCGACCCCAAGCACAGGCACCTGCTGAGGAAGCACCGCTCCGTCACCCAGCCCTCGTCCTCCGCGCACCACAGGAGGAACAGGCTGCTGCTCTGA
Protein
MYPHSLSFDQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETPKIRHTPVTPKVRSPLSYEIAENILDRPSPLTSRSLRGTLKIKEVLEDRSWYKRSNKENCEPMMAETFMKFDNEEDARDCSFGGSFNNSGETSWGNAKLDFTNLQSSFQTEIKDTFVPQKDAEPVEELDILQDLEQEFDSDNFDTCTKYEIISTDSPDIISRGRVSSARKVTARNFVFGAPLAENEPSTSFNRSNSANRMLNFDDEDFEFTSPALGKRVSVKKSLKFTETTTNNPLKHEISDSSVSTNGSPTKLRLYTSESTTSMESGFVSELEEPFLEIEESNSPKLANITDLLSGQIKNNIVMTKKINLSRSLSFNPERASLFSIKESPEKRCRILEESETDSACKRRKEDLNNSGKIQRPILQRAFSENNASIMSALARSAIEPDLIGDFSQPFALPLISGDHSDLKSISCDTLAELIRGAYQSSISDYQVIDCRYPYEFAGGHVAGAHNLFTPAHILALVHEPLSPRKSDGKRSILVFHCEFSLERGPKLSRFLRSSDRESNKERYPALRFPEVYLLHEGYRRFYQKYPELCSPTGYTAMLDPKHRHLLRKHRSVTQPSSSAHHRRNRLLL

Summary

Uniprot
D3KYT1   H9JQU6   A0A0N1II03   A0A212F8H8   A0A2H1V5L3   A0A2A4J0D0   + More
A0A2W1BIJ2   A0A0L7LVQ7   A0A194Q3P0   A0A0B6VKA0  
Pubmed
19121390    26354079    22118469    28756777    26227816   
EMBL
AB546967    BAI77430.1    BABH01028698    KQ460400    KPJ14977.1    AGBW02009726    + More
OWR50031.1    ODYU01000797    SOQ36117.1    NWSH01003957    PCG65617.1    KZ150132    PZC73047.1    JTDY01000010    KOB79464.1    KQ459564    KPI99624.1    LC002986    BAQ21236.1   
Proteomes
UP000005204    UP000053240    UP000007151    UP000218220    UP000037510    UP000053268    + More
PRIDE
D3KYT1    H9JQU6   
Pfam
PF00581   Rhodanese
Interpro
IPR000751   MPI_Phosphatase        + More
IPR001763   Rhodanese-like_dom       
IPR036873   Rhodanese-like_dom_sf       
SUPFAM
SSF52821   SSF52821       
Gene 3D
3.40.250.10    
CDD
cd01530  Cdc25
ProteinModelPortal
D3KYT1   H9JQU6   A0A0N1II03   A0A212F8H8   A0A2H1V5L3   A0A2A4J0D0   + More
A0A2W1BIJ2   A0A0L7LVQ7   A0A194Q3P0   A0A0B6VKA0  
PDB
3OP3     E-value=2.44611e-40,     Score=418

Ontologies

KEGG
100216491    K16723 M-phase inducer phosphatase [EC:3.1.3.48] | (RefSeq) Cdc25, Bmcdc25; cell division cycle 25
GO
GO:0004725   GO:1902751   GO:0051301   GO:0000087   GO:0005622   GO:0006470   GO:0006744   GO:0016627   GO:0030145   GO:0015923   GO:0005634   GO:0006260  

Topology

Length:
651
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00407
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00015
outside
1  -  651
 
 

Population Genetic Test Statistics

Pi
248.381985
Theta
162.808385
Tajima's D
1.547966
CLR
0.175734
CSRT
0.798210089495525
Interpretation
Uncertain
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