SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06334  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011901
Annotation
sericin_2_isoform_1_precursor_[Bombyx_mori]
Location
Bomo_Chr11(+):4910553-4923377      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.504
 

Sequence

CDS
ATGAAGATCCCATACGTCTTGCTGTTCCTTGTGGGCGTGGCTGTGGTCAACGCATTGCCCAATCCACTTTTCGGGGGCTTAGTTAAATCGCTTAGCAAAAAAAAACAAATTTTTGAGGACAAATTTGAAAATCTCAAAGAGAATGTGGGTGAAAAATTTGAAAATCTCAAAGAAAACGTGGGTGAAAAAGTTGAAAATCTCAAAGAGAATGTTGGTGAAAAATTAGAAAATATCAAAGAGAAGGCTGGAGAAAAATTTGAAAATCTCAAAGACAATGTTGGAGAAAAATTTGAAAATCTCAAAGACAATGTTGGAGACAAATTAGAAGCAGCTAAAGAAAAAGCTGGAGAAATCAAAAAGAAACTAGTGGATGTCGGCGAAGATCTGAAAGACGAGCTCACGGAAGACAAAAAAATAAAGATATCCATCTCGAAAGACGAAGGATTGACTTTAGAAAAAGAAGGATACAAGTCTGATTACGATCGTAATGAATATGAAGAACGCGGATCTGAACACCAGGAGGATAACGACAGCGACGGCTCATACAGCAAAGGTTCCGAATACGAAAAATACGGTGAAGAGGAAAAGTATGAAGAACGTAGGACCCACGACAAGTTCTCCATTGGCAAGAACGGTATTAGTGCCGAGCGAACGAAATCAAAGAGAGGTGAAAGAAAAGAAGTCGAAGGCGAATATGAGAAAGACTACGAAAGGAAAGAGAACAACGGCGGATCCTCCGAATATTCAGAGAGAGAAAGAGAGAGTTTGGAAAAATCAAAAGAAAGGTACGGCGAGCAGTCGTCTAAGTCCTTCTCGTTGGGTAAATCCGGCTTGAAGAAGCAGGATAATTCAAAATCGTATTCCGACAAGGAAGAGTCGAAACTGGAAAAGGAAAAGAAATATGAAAAGAAAACAAAAATCAACAATGAAAGGCAGTTAGATGAAGATGAGAACGAAAGGAGAACTGTTGTAGGCCGAGATGAGCAAAGGCAAGATGACCAAAGCCGAGACGACCAAAGCCGAGATGACCAAAGCCAAGATGAGGAAACTGGCAGCGACGATAGTGACAAAAATAGAGGAAAGGATACTGACGATAAATATTCCGAGACAGGAACCAATAAATCATCAGAAACGAAGACAGGCAAGCGTGATGGCTCGAAGAGCGGCGTCACAGTCGAAAGGGAAAAATCCGAATCCAACAAGAAAAGTCGTGAATTTGAAAATAAAGAAGCTGAATCTTCGACCTATAGGGATAAGAATCGGTCAGTGAACAGTGGCTCGGAACGCAAGAGTTCCGGTAAAGACGAGGAGTACAGTGAACAGAACTCCAGTAATAAATCCTTTAACGACGGCGATGCATCGGCTGACTACCAAACCAAATCTAAGAAGGTTGAAAAGAATTCTGCCAGAGATAAAAAGGAAAAGGAAAAAACTGACACAAGAAATTCTGACGGAACGTACAAAACTTCTGAGCGCGAAAAAGAACAATCTTCTAGAGTGAATCAAAGTAAGGGCAGCAACTCTCGGGATTCCTCGGAGTCAGACAAATCTGGCCGAAAAGTGAATAAAGAAACAGAAACGTACTCTGACAAAGACGCGCAGACTTCAGAAAGTGAACGTACTCAAAGTAAAGAAAAAAAAAATACAGCGCCCAAGAATAAGGGCAAAAAGGGAACCTCTACAGAAACAGATGGAGTCACTAAGAATGCTAGTAAGCAGAAGGAGAAGGTGCCTAAAGATGGAAGTAAAAGCTCCACGAATGATAGCGAAGGCAAACAAAAAAACAAAGACCAATCAAAGGGACAGAAAAATAATCAAGACGGACAAGACTCTTCGACGAACGAAAATTCCAAAAAGACAGATGATAATGTTGCAAAGAAAGAAGAACCCAATAATCAAAAGAGAGAACAAAAAGGAAAGACAAGATGTGGCTCTAGGAAAACTGAGAGTTCCAAAGCGAAAGAAGATAGAAGCAAGAAAAGCACTACCGATAAGGACCAGCGCGACGACAAAAAAGATTCCTCCAGCAAAAACATAGACAAGCCTAAAGATGGGTCATCATCGGATAAAGACTCAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGTAAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGTAAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGTAAAGCCTAACGACAGATCACCAACGCATAAAGACACAGAGAAGGTAAAACCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGTAAAGCCTAACGACAGATCACCATCGTATAAAGACACTGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGCTAAGCATAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGTAAAACCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGTATAAAGACACTGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGCTAAGCATAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGTAAAACCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGTAAAGCCTAACGACAGATCACAATCGTATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAAGCTAAGCCTAACGGCAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGTAAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAGAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAAGCTAAGCCTAACGGCAGATCACCATCGGATAAAGACACAGAGAAGGTAAAGCCTAACGACAGATCACCATCGCATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAAGCTAAGCCTAACGGCAGATCACCATCGGATAAAGACACAGAGAAGGTAAAGCCTAACGACAGATCACCATCGCATAAATACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCACCATCGGATAAAGACACAGATAAGACATTCGACAAAAACATAGACAATAAAAGGCCCAAGGACGGTTCATCATCGGATAAGAACGTAGAGCAGGAAAGGGAGAACTACAAATCCGAATCTAGCCGAAATGAATTTGAAAACCAAAAATCTGCACATTCGAGATATGAGGATAACGGTGGTTTGAAAGAAAAAAGCTCGCAATCTAAGAATTACGGAAGAGACGAGAAGTACAGTGAAGAGAAGGAGAGGAGTTCCACTGGGAAGTTTGGATCGAATGACTCCCGAGCACGTTCTACAAAAGCCGAAGAGGAACATGTCAGGAAGTCACAAGAAGAAACACATTCAGAGCAACGAGAAAAAACAAGATCTGACGGAGTGACTAAATACAACGATGGTGATGAGCATTTCGATTCAGACGATACAGAGAAGACTAAGCCTAATGGCAGATCACCATCGCATAAAGACACAGAGAAGGCTAAGCCTAACGACAGATCATCCTCGGATAAAGACACAGAGAAGACATTTGACAAAAACATAGACAATAAAAGGCCCAAGGACGGTTCATCATCGGATAAGAACGTAGAGCAGGAAAGGGAGAACTACAAATCCGAATCTAGCCGAAATGAATTTGAAAACCAAAAATCTGCACATTCGAGATATGAGGATAACGGTGGTTTGAAAGAAAAAAGCTCGCAATCTAAGAATTACGGAAGAGACGAGAAGTACAGTGAAGAGAAGGAGAGGAGTTCCACTGGGAAGTCTGGATCGAATGACTCCCGAGCACGTTCTACAAAAGCCGAAGAGGAACATGTCAGGAAGTCACAAGAAGAAACACATTCAGAGCAACGAGGAAGAACAAGATCTGACGGAGCAACTACGTCCAACGATAATGATAAGCAATACGATTCAGACGACAAGAACAACAGTAGCACCAAACATAAGAAAACGGTCATGAGATCTGAGCAATCAGATTCGTCTCAAAATGAAAATTCTACCTCCGAATCCAAAAAGTTCGCAAAAACTGATGGCTCCAACAAATATGAAGCGGAATCAAGTTCGCATAAACAACAAGAAGCGCGCAAACAGAGCAATAGAGTAGTAGAGAAGAGCACTGATGGGGACAATGAGGAATCCTACAGGAGCGAAAGCAGCAGCAGCAGCAGCAGCAGTTCTAGTAGTAGTCGAAGCAGTTCCTCAAGCACCTACACCGGCTCCCATGATGATAGCTCCGAGGAATGA
Protein
MKIPYVLLFLVGVAVVNALPNPLFGGLVKSLSKKKQIFEDKFENLKENVGEKFENLKENVGEKVENLKENVGEKLENIKEKAGEKFENLKDNVGEKFENLKDNVGDKLEAAKEKAGEIKKKLVDVGEDLKDELTEDKKIKISISKDEGLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDGSYSKGSEYEKYGEEEKYEERRTHDKFSIGKNGISAERTKSKRGERKEVEGEYEKDYERKENNGGSSEYSERERESLEKSKERYGEQSSKSFSLGKSGLKKQDNSKSYSDKEESKLEKEKKYEKKTKINNERQLDEDENERRTVVGRDEQRQDDQSRDDQSRDDQSQDEETGSDDSDKNRGKDTDDKYSETGTNKSSETKTGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEKNSARDKKEKEKTDTRNSDGTYKTSEREKEQSSRVNQSKGSNSRDSSESDKSGRKVNKETETYSDKDAQTSESERTQSKEKKNTAPKNKGKKGTSTETDGVTKNASKQKEKVPKDGSKSSTNDSEGKQKNKDQSKGQKNNQDGQDSSTNENSKKTDDNVAKKEEPNNQKREQKGKTRCGSRKTESSKAKEDRSKKSTTDKDQRDDKKDSSSKNIDKPKDGSSSDKDSEKAKPNDRSPSHKDTEKVKPNDRSPSHKDTEKVKPNDRSPSDKDTEKAKPNDRSPSHKDTEKVKPNDRSPTHKDTEKVKPNDRSPSHKDTEKAKPNDRSPSDKDTEKAKPNDRSPSHKDTEKVKPNDRSPSYKDTEKAKPNDRSPSDKDTEKAKPNDRSPSHKDTEKAKHNDRSPSDKDTEKAKPNDRSPSHKDTEKAKPNDRSPSHKDTEKVKPNDRSPSHKDTEKAKPNDRSPSDKDTEKAKPNDRSPSYKDTEKAKPNDRSPSDKDTEKAKPNDRSPSHKDTEKAKHNDRSPSDKDTEKAKPNDRSPSHKDTEKAKPNDRSPSHKDTEKVKPNDRSPSHKDTEKAKPNDRSPSDKDTEKAKPNDRSPSHKDTEKVKPNDRSQSYKDTEKAKPNDRSPSDKDTEKAKPNGRSPSDKDTEKAKPNDRSPSHKDTEKVKPNDRSPSHKDTEKAKPNDRSPSDRDTEKAKPNDRSPSDKDTEKAKPNGRSPSDKDTEKVKPNDRSPSHKDTEKAKPNDRSPSDKDTEKAKPNDRSPSDKDTEKAKPNDRSPSDKDTEKAKPNDRSPSDKDTEKAKPNGRSPSDKDTEKVKPNDRSPSHKYTEKAKPNDRSPSDKDTEKAKPNDRSPSDKDTEKAKPNDRSPSDKDTDKTFDKNIDNKRPKDGSSSDKNVEQERENYKSESSRNEFENQKSAHSRYEDNGGLKEKSSQSKNYGRDEKYSEEKERSSTGKFGSNDSRARSTKAEEEHVRKSQEETHSEQREKTRSDGVTKYNDGDEHFDSDDTEKTKPNGRSPSHKDTEKAKPNDRSSSDKDTEKTFDKNIDNKRPKDGSSSDKNVEQERENYKSESSRNEFENQKSAHSRYEDNGGLKEKSSQSKNYGRDEKYSEEKERSSTGKSGSNDSRARSTKAEEEHVRKSQEETHSEQRGRTRSDGATTSNDNDKQYDSDDKNNSSTKHKKTVMRSEQSDSSQNENSTSESKKFAKTDGSNKYEAESSSHKQQEARKQSNRVVEKSTDGDNEESYRSESSSSSSSSSSSSRSSSSSTYTGSHDDSSEE

Summary

Uniprot
D2WL76  
Pubmed
19995605   
EMBL
GQ381286    ADA84147.1   
PRIDE
D2WL76   
ProteinModelPortal
D2WL76  
PDB
5JCS     E-value=0.00715257,     Score=99

Ontologies

KEGG
100379325    no KO assigned | (RefSeq) Ser2; sericin 2
GO

Topology

SignalP
Position:   1 - 18,         Likelihood:  0.995181
 
 
Length:
1743
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
20.00258
Exp number, first 60 AAs:
20.00258
Total prob of N-in:
0.90920
POSSIBLE N-term signal
sequence
inside
1  -  4
TMhelix
5  -  27
outside
28  -  1743
 
 

Population Genetic Test Statistics

Pi
209.078537
Theta
182.909976
Tajima's D
-0.863054
CLR
0.623853
CSRT
0.166591670416479
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
27102218 SAHSRYEDNGGIKEK 100.00 6e-13
27102218 DDQSRDDQSQDEETGSDDSDKNR 100.00 4e-09
24093152 SDGATTSNDNDKQYDSDDK 100.00 1e-08
27102218 YGEEEKYEERR 100.00 1e-08
27102218 AKPNDR 100.00 5e-08
27102218 SREFENKEAESSTYR 100.00 7e-08
27102218 FENIKENVGEKVENIK 100.00 1e-07
24093152 TRDNIYVITETIAEK 100.00 2e-06
24093152 TDGSNKYEAESSSHK 100.00 2e-06
27102218 FENIKDNVGEK 100.00 2e-06
24093152 VNIENVVYIK 100.00 8e-06
27102218 SPSDKDTEK 100.00 8e-06
28467696 VNIVIPPTDKYEDIPDQTK 100.00 8e-06
27102218 SGSNDSR 100.00 2e-05
24093152 SDFGVASTR 100.00 4e-05
27102218 SYSDKEESK 100.00 4e-05
25860555 SKSDAYVGRDGTVAYSNK 100.00 3e-04
25860555 SKSDAYVGRDGTVAYSNK 100.00 3e-04
24093152 DGSSSDKNVEQER 100.00 3e-04
24093152 DGSSSDKNVEQER 100.00 3e-04
24402669 DGSSIIQCHAR 100.00 3e-04
24402669 DGSSIIQCHAR 100.00 3e-04
27102218 TDGSNKYEAESSSHK 100.00 3e-04
27102218 TDGSNKYEAESSSHK 100.00 3e-04
28467696 DGSITSGGVTKPWR 100.00 3e-04
28467696 DGSITSGGVTKPWR 100.00 3e-04
24093152 DTDDKYSETGTNK 100.00 4e-04
24093152 SFNDGDASADYQTK 100.00 7e-04
27102218 NYGRDEKYSEEK 100.00 7e-04
25860555 SFEPIPDEPRAR 100.00 0.001
24093152 ETETYSDK 100.00 0.001
27102218 QIFEDKFENIKENVGEK 100.00 0.001
28467696 ETETVMIPAVQAGIEAIK 100.00 0.001
24093152 YNDEIAQETIEWIR 100.00 0.002
27102218 GKDTDDKYSETGTNK 100.00 0.002
28467696 YNDEIAQETIEWIR 100.00 0.002
24093152 KSEVITNVVNK 100.00 0.002
27102218 DTDDKYSETGTNK 100.00 0.002
27102218 EAESSTYRDK 100.00 0.002
27102218 EAESSTYRDK 100.00 0.002
28467696 ENYHGIVGVR 100.00 0.002
28467696 ENYHGIVGVR 100.00 0.002
27102218 AGEKFENIKDNVGEK 100.00 0.003
27102218 ENNGGSSEYSERERESIEK 100.00 0.006
25860555 RIMIPR 100.00 0.008
24093152 TDGSIFIK 100.00 0.008
24402669 TDFKIDAK 100.00 0.008
27102218 IVDVGEDIKDEITEDKK 100.00 0.008
28467696 TDGSCNNIYYPTR 100.00 0.008
24093152 SSESAYQFNQQESKK 100.00 0.008
27102218 EVEGEYEKDYERK 100.00 0.008
25860555 EWMDITEAVIMDPK 100.00 0.008
24093152 SFGGNICR 100.00 0.008
24402669 SFKPGSVIPK 100.00 0.008
27102218 SPSYKDTEK 100.00 0.008
28467696 SFMRPSEFQSSDYQTTSNVTK 100.00 0.008
27102218 KGTSTETDGVTK 100.00 0.008
28467696 EFENKEAESSTYR 100.00 0.008
24093152 GIVIDTSR 100.00 0.009
24402669 GKDIPIIIGFTNSECHMFQR 100.00 0.009
27102218 DEKYSEEKER 100.00 0.009
27102218 SESSRNEFENQK 100.00 0.009
28467696 SRECDQISEDIQSK 100.00 0.009
27102218 KENNGGSSEYSERER 100.00 0.011
24093152 NVEQERENYK 100.00 0.014
24093152 NVEQERENYK 100.00 0.014
27102218 FENIKENVGEKFENIK 100.00 0.014
27102218 FENIKENVGEKFENIK 100.00 0.014
27102218 KEEPNNQKR 100.00 0.022
24093152 YEAAPFVAR 100.00 0.033
27102218 IVDVGEDIK 100.00 0.033
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