Gene

KWMTBOMO06315

Pre Gene Modal

BGIBMGA011999

Annotation

PREDICTED:_ATP_synthase_subunit_s?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr11(-):4637521-4649802      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.047 Mitochondrial   Reliability : 1.685 Nuclear   Reliability : 1.451

CDS

ATGCAAAAAATTTTACGTAACATTTCTCGTTATCCATATACGCCGAGAATCGATCAAAAAAGGTCGTTCTGGGAGTACGTGAATATGATGTTCAACAAACCTGATCCCGACAGGATCAAGGCCGTCGGAGCTGATCGAGCGTGCGCTGAGTGGGTCTTGAAAAATGGCGGTAAAATCGTTTGGGCGGATGGGAAACGAATTGAGGATTACAATGTACTTCCTTCCGACGATACGATCCTACCCAAAATAATTGAAATCGATGGAACCGATTCAGCTATATCTCACTACGGATTCCCACATTTAAATGGTTGTACGATGCTAAGCAAAATTATCCTGCATAATAATAATTATATAGACGATCGGGCTCTGAAAGGATTATCGTACGCAAAGAACACACTTTCGCATTTACAAATCTCAAAATGTGTGAATGTCACCGATGCCGGTCTTAAAGAACTCAACATATTGGAGAAACTGCAGCACCTGATACTCTTTAATTTGGAGAGTGTTAACGATTTGGAAGATTGTAAAAAATATCTGAAGTCTCAAATTCCTAAATGTAATATTGAAGGTAATCCGAAGCAAAAAAACGAAGATTCATTGTAA

Protein

MQKILRNISRYPYTPRIDQKRSFWEYVNMMFNKPDPDRIKAVGADRACAEWVLKNGGKIVWADGKRIEDYNVLPSDDTILPKIIEIDGTDSAISHYGFPHLNGCTMLSKIILHNNNYIDDRALKGLSYAKNTLSHLQISKCVNVTDAGLKELNILEKLQHLILFNLESVNDLEDCKKYLKSQIPKCNIEGNPKQKNEDSL

Uniprot

A0A2A4JQ77   A0A2W1BBS6   A0A194RPQ8   S4P484   A0A2H1VUY7   A0A0L7KQS0   + More
A0A0L7LJD9   A0A0N1PG77   A0A212FE72   A0A182SWY8   A0A2R5L5P5   A0A067R4Y7   A0A2Y9D310   A0A182HYM5   Q7PQA0   A0A182U1M1   D6WTS2   A0A182FQV7   W5JBN3   A0A182JH87   A0A0P5FMV1   A0A084VRH7   A0A293MDS3   A0A182G338   A0A182JWD7   A0A182W3E5   A0A023FNL8   T1DTZ0   A0A023FI00   L7M3W9   A0A1L8DZX2   A0A226EWC5   A0A1L8E156   A0A224YRU9   A0A182XFD3   A0A0K8RNT1   V5I1V4   V5H686   A0A0C9R1B9   G3MQ10   B4LQ16   A0A131YMM2   A0A1E1WWJ7   G3MSC8   A0A1W4XDN7   A0A131XHG4   A0A1B0GIP0   A0A0P4W8W0   A0A1Y1NBQ9   A0A0M4EXI8   N6T3E0   A0A1D2NKD6   A0A0V0G8H8   A0A2J7PTA2   A0A1Q3FKS5   A0A1I8N810   A0A1W4VC95   A0A0P5Y2N1   A0A069DPT9   J3JUP0   Q16XP9   A0A0Q9X9A1   Q6XIJ0   A0A3L8E3Z0   A0A026VW36   B3NPW5   A0A182RZL4   A0A0L7R488   A0A1L8EDI2   A0A1B0D9N2   A0A1L8EDH0   A0A1L8EDR0   B4P6Q4   A0A0N7Z987   B4JWA5   B4MRD9   A0A182Y8U0   B4HSK7   A1ZAA9   L7LUT7   W4XGE3   A0A3B0JNM8   B4QHG1   K7SMK4   A0A1I8PR20   B4GAJ7   B0WKN7   A0A1D1UYP0   A0A1B6EHG3   A0A0K8TTH3   B5DZY9   A0A195DFB8   L7LUA9   A0A1J1IPV7   A0A1B6MR20   F4W4C4   A0A0K8VWX0  

Pubmed

28756777    26354079    23622113    26227816    22118469    24845553    + More
12364791    14747013    17210077    18362917    19820115    20920257    23761445    24438588    26483478    25576852    28797301    25765539    26131772    22216098    17994087    26830274    28503490    28049606    28004739    23537049    27289101    25315136    26334808    22516182    17510324    14525923    30249741    24508170    17550304    27129103    25244985    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    27649274    26369729    15632085    21719571   

EMBL

NWSH01000798    PCG74151.1    KZ150160    PZC72722.1    KQ459833    KPJ19838.1    + More
GAIX01009167    JAA83393.1    ODYU01004426    SOQ44282.1    JTDY01006866    KOB65632.1    JTDY01000888    KOB75550.1    KQ459037    KPJ04272.1    AGBW02008970    OWR52031.1    GGLE01000644    MBY04770.1    KK852747    KDR17260.1    APCN01005389    AAAB01008898    EAA09130.6    KQ971352    EFA07591.1    ADMH02001863    ETN60808.1    GDIP01151207    GDIQ01260574    JAJ72195.1    JAJ91150.1    ATLV01015669    KE525026    KFB40571.1    GFWV01019139    MAA43867.1    JXUM01140693    KQ569109    KXJ68759.1    GBBK01001130    JAC23352.1    GAMD01000624    JAB00967.1    GBBK01003732    JAC20750.1    GACK01006309    JAA58725.1    GFDF01002026    JAV12058.1    LNIX01000002    OXA60926.1    GFDF01001708    JAV12376.1    GFPF01006175    MAA17321.1    GADI01001102    JAA72706.1    GANP01003025    JAB81443.1    GANP01014641    JAB69827.1    GBZX01001980    JAG90760.1    JO843961    AEO35578.1    CH940648    EDW60339.2    GEDV01008033    JAP80524.1    GFAC01007830    JAT91358.1    JO844779    AEO36396.1    GEFH01002749    JAP65832.1    AJWK01015123    GDRN01091345    JAI60284.1    GEZM01007779    GEZM01007778    JAV94938.1    CP012524    ALC42720.1    APGK01045628    KB741037    KB632319    ENN74659.1    ERL92296.1    LJIJ01000018    ODN05714.1    GECL01001967    JAP04157.1    NEVH01021676    PNF19556.1    GFDL01006941    JAV28104.1    GDIP01077019    JAM26696.1    GBGD01003059    JAC85830.1    BT126955    AEE61917.1    CH477534    EAT39393.1    CH933808    KRG04733.1    AY231840    AAR09863.1    QOIP01000001    RLU27411.1    KK107965    EZA47039.1    CH954179    EDV55812.1    KQ414657    KOC65700.1    GFDG01002011    JAV16788.1    AJVK01013005    GFDG01002029    JAV16770.1    GFDG01002024    JAV16775.1    CM000158    EDW91981.1    GDKW01001235    JAI55360.1    CH916375    EDV98243.1    CH963850    EDW74678.1    CH480816    EDW48085.1    AE013599    AAF58056.2    AHN56274.1    GACK01010440    JAA54594.1    AAGJ04105961    OUUW01000001    SPP72808.1    CM000362    CM002911    EDX07306.1    KMY94186.1    BT149872    AFW05297.1    CH479181    EDW31949.1    DS231974    EDS29968.1    BDGG01000002    GAU93525.1    GECZ01032412    JAS37357.1    GDAI01000147    JAI17456.1    CM000071    EDY68894.1    KQ980905    KYN11556.1    GACK01010600    JAA54434.1    CVRI01000057    CRL02277.1    GEBQ01001624    JAT38353.1    GL887504    EGI70952.1    GDHF01008960    JAI43354.1   

Proteomes

UP000218220    UP000053240    UP000037510    UP000053268    UP000007151    UP000075901    + More
UP000027135    UP000075903    UP000075840    UP000007062    UP000075902    UP000007266    UP000069272    UP000000673    UP000075880    UP000030765    UP000069940    UP000249989    UP000075881    UP000075920    UP000198287    UP000076407    UP000008792    UP000192223    UP000092461    UP000092553    UP000019118    UP000030742    UP000094527    UP000235965    UP000095301    UP000192221    UP000008820    UP000009192    UP000279307    UP000053097    UP000008711    UP000075900    UP000053825    UP000092462    UP000002282    UP000001070    UP000007798    UP000076408    UP000001292    UP000000803    UP000007110    UP000268350    UP000000304    UP000095300    UP000008744    UP000002320    UP000186922    UP000001819    UP000078492    UP000183832    UP000007755   

PRIDE

A1ZAA9   

Pfam

PF13516   LRR_6        + More
PF02383   Syja_N
PF03143   GTP_EFTU_D3
PF03144   GTP_EFTU_D2
PF00009   GTP_EFTU

Interpro

IPR026063   ATP5S/ATP5SL        + More
IPR032675   LRR_dom_sf       
IPR006553   Leu-rich_rpt_Cys-con_subtyp       
IPR001611   Leu-rich_rpt       
IPR002013   SAC_dom       
IPR029058   AB_hydrolase       
IPR026555   NSL3/Tex30       
IPR031157   G_TR_CS       
IPR009001   Transl_elong_EF1A/Init_IF2_C       
IPR005225   Small_GTP-bd_dom       
IPR000795   TF_GTP-bd_dom       
IPR004161   EFTu-like_2       
IPR041709   EF-Tu_GTP-bd       
IPR004160   Transl_elong_EFTu/EF1A_C       
IPR009000   Transl_B-barrel_sf       
IPR027417   P-loop_NTPase       

SUPFAM

SSF53474   SSF53474        + More
SSF50447   SSF50447       
SSF50465   SSF50465       
SSF52540   SSF52540       

Gene 3D

3.80.10.10     3.40.50.1820    

CDD

cd01884  EF_Tu

ProteinModelPortal

A0A2A4JQ77   A0A2W1BBS6   A0A194RPQ8   S4P484   A0A2H1VUY7   A0A0L7KQS0   + More
A0A0L7LJD9   A0A0N1PG77   A0A212FE72   A0A182SWY8   A0A2R5L5P5   A0A067R4Y7   A0A2Y9D310   A0A182HYM5   Q7PQA0   A0A182U1M1   D6WTS2   A0A182FQV7   W5JBN3   A0A182JH87   A0A0P5FMV1   A0A084VRH7   A0A293MDS3   A0A182G338   A0A182JWD7   A0A182W3E5   A0A023FNL8   T1DTZ0   A0A023FI00   L7M3W9   A0A1L8DZX2   A0A226EWC5   A0A1L8E156   A0A224YRU9   A0A182XFD3   A0A0K8RNT1   V5I1V4   V5H686   A0A0C9R1B9   G3MQ10   B4LQ16   A0A131YMM2   A0A1E1WWJ7   G3MSC8   A0A1W4XDN7   A0A131XHG4   A0A1B0GIP0   A0A0P4W8W0   A0A1Y1NBQ9   A0A0M4EXI8   N6T3E0   A0A1D2NKD6   A0A0V0G8H8   A0A2J7PTA2   A0A1Q3FKS5   A0A1I8N810   A0A1W4VC95   A0A0P5Y2N1   A0A069DPT9   J3JUP0   Q16XP9   A0A0Q9X9A1   Q6XIJ0   A0A3L8E3Z0   A0A026VW36   B3NPW5   A0A182RZL4   A0A0L7R488   A0A1L8EDI2   A0A1B0D9N2   A0A1L8EDH0   A0A1L8EDR0   B4P6Q4   A0A0N7Z987   B4JWA5   B4MRD9   A0A182Y8U0   B4HSK7   A1ZAA9   L7LUT7   W4XGE3   A0A3B0JNM8   B4QHG1   K7SMK4   A0A1I8PR20   B4GAJ7   B0WKN7   A0A1D1UYP0   A0A1B6EHG3   A0A0K8TTH3   B5DZY9   A0A195DFB8   L7LUA9   A0A1J1IPV7   A0A1B6MR20   F4W4C4   A0A0K8VWX0  

PDB

3E4G     E-value=1.26324e-24,     Score=276

KEGG

101737433    K07554 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s | (RefSeq) ATP synthase su

GO

GO:0042578   GO:0005525   GO:0003924   GO:1902600   GO:0000276  

PANTHER

PTHR13382:SF10   PTHR13136  

Length:

200

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00363

Exp number, first 60 AAs:

0

Total prob of N-in:

0.25884

outside

1  -  200

 

 

Pi

217.866362

Theta

154.549398

Tajima's D

1.758153

CLR

0.649463

CSRT

0.83730813459327

Interpretation

Uncertain