Silkworm Genome Informatics Database

Gene

KWMTBOMO06308

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(+):4501272-4511756 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.676 Nuclear Reliability : 1.334

CDS

ATGGGCCCGGCCACAGAGGGTTATACTGTTGCAAAAAAGTTTATTAAAGGAAATAGACCTGAAGCCTCTGGCCTCCCGCTGGAGTCAGAGAGGACAGGCGATAACCCGACTGTGCGGGGTTCCGCCGGCGCAGATCCTGTGGGTCAGGATGCGCCTGGTTGGACCTGCCAGTTCTGCGAACGATCCTTTTCGACCAACAGGGGTTTGGGTGTCCACAAGCGTAGAGCCCACCCTGTTGAGACTAATACGGATGCCGCTCCGATGATGGTGAAGCGGCGGTGGCATGGCGAGGAAGTCGACCTCCTCGCTCGCACCGAGGCCAGGTTGCTCGCTGAGCGGGGTCAGTGCTCGGGTGGAGACCTCTTTGGCGAGCTTCCAGGGTTTGGAAGAACTCTGGAAGCGATTAAGGGACAACGGCGGAGGGAGCCTTATCGGGAATTGGTGCAAGCGCACCTTGCCCGATCTGGTTCCCAGCCGGGTCCCTCGTCAGGGGGGTGCTCGGCCGAGCCTGACTTCCGGCGGGCTTCTGGAGCTGAGGAAGCGGGCGAGGAACGATGCGCCGAAGACGCCGCTGCCTATGATCCATCCGCAGTCGGTCAGATGTCGCCCGATGCCGCTCGGGTTCTCTCCGAACTCCTTGAGGGTGCGGGGAGAAGACGAGCGTGCAGGGCTATGAGACCCAAGACTGCAGGGCGGCGAAACGATTTGCACGATGATCGGACAGCTAGTGCCCACAAAACCAAAAGACAAAAGCGCAGAGCGGAGTACGCGCGTGTGCAGGAACTATACAAGAAGTGTCGCAGCAGAGCAGCAGCTGAAGTGATCGATGGCGCGTGTGGACCCCCAGTGTGGACGGTACTCTGGAGAATTCCGCAGTACTGGACGCGGTGCTTGGGGATAGCAGGAAGAAGCTGCGGGCGGGAATGTCACGTGGCGGTGCTAGACTTCGCTAAGGCATTCGACACTGTGTCTCACGAGGCACTTGTCGAATTGCTGAGGTTGAGGGGCATGCCCGTACAGTTCTGCGGCTACATTGCTCACCTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTGAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCGATACTCTTCAACGTGGTGATGGACCTCATCCTGGCTTCCCTGCCGGAGAGGGTCGGGTATAGGTTGGAGATGGAACTCGTGTCCGCCCTGGCCTATGCTGACGACCTAGTCCTGCTTGCGGGGTCGAAGGTAGGGATGCAGGAGTCCATCTCTGCTGTGGACTGTGTCGGTAGGCAGATGGGCCTACGCCTGAATTGCAGGAAGAGCGCGGTTCTCTCTATGATACCGGATGGCCACCGCAAGAAGCATCACTACCTGACTGAGCGAACCTTCAATATTGGAGGTAAGCTGCTCAGGCAGGTGAGTTGTGTTGAGCGGTGGCGATATCTTGGTGTCGATTTTGAGGCCTCTGGATGCGTGACATTAGAGCATAGTATCAGTAGTGCTCTGAATAACATCTCAAGGGCACCTCTCAAACCCCAACAGAGGTTGGAGATTTTGAGAGCTCATCTGATTCCGAGGTTCCAGCACGGTTTCGTGCTTGGAAACATCTCGGATGACAGATTGAGAATGCTCGATGTCCAAATCCGGAAAGCAGTCGGACAGTGGCTTAGGCTACCGGCGGATGTGTCCAAGGCATACTATCACGCCGCAGTTCAGGACGGCGGCTTAGCGATCCCATCGGTGCGAGCGACCATCCCGGACCTCATTGTGAGGCGTTTCGGGGGGCTCGACTCGTCACCATGGTCAGTGGCAAGAGCCACCGCCAAATCTGAAAAGATTCTTGCTCCTGGACTGTCGTCCTCGGCGCCTGTCACCCCGGCTGACCCAGTGGCTGGTGTCCCTGATTTCCCCATTCCTGTAGCGTCAGGGGCTCCGACTGGACCCCTTGATGTAGCAGCGCAGGGGAGGCTGGAGCTGCTCGAGCAGGCAAACCGAGCGGTGCGTGGGATAATGTCGGTGGCGACGGCGGCATCCAAACTCAACAAGTCGGAGGTCAATGTGATCTCCGAATTTGGTCGCGATATCCTGGCCGTAGTTGGGGCCCTCGGGATCCAGCTCTCAGAAAAGGAGCTGGTGGTCGAAAGGCTCCGCTCGGCAGAGGCCTCTGCACGGCGTGACGCCTTGGTACCTTCGATGGCTGCTGGTGCGGCGGCCGGGTCTGGGACTGGGCCTGCGACTTTTGCCACTGTCCTCAAGACGGGCCCTGGTGGGGTCCCGAGGTCCATTGGGGCCTCTCAGGGGCCTTCCTTGGCATTTTACCCGTCCGAGGGCAATGCAGAACTGAAGACAGCGGAGGACACAAAGAAGGAGGTGAAAAAGGCCATTGACCCTAAGTCAATGGCAATTGGAATACGGAGCGTAAGGAAGGTCGGGAATGCGGGGGTAGTGGTGCAGACCACGTCCCCCGCGGCTGCAGTTAAGCTGAGAAATGCGGCCCCGCCATCACTAAGAGTCACCGAACCCAGGCGCCGACAGCCCTTAGTGGCTGTCAATGGTGTGGAGGGTGACCCCTCCTTCGAGGAGGTAATTGAGTGCCTGGCTAGCCAGAACCTTGACCCGGAGGAGTGGCCCCTCACTAGGATTCGAGCGGAGCTCACGGGGGCGTTCAAAAAGGGGAGGCGACAGTCCAACAACACTACTGTGGTGTTCAACGCCTCCCCTCGCATCAGGGACGCCCTCGTGAAGCTTGGCAGAGTGTCGAGTATGGATATTAGGCCCCGACTTCGTATTGGCCAAATCAATCTGGGTGGTGCAGAGGATGCGACGAGGGAGCTACCCTCCATTGCACGTGATCTCGGCCTGGATATTGTTCTTGTACAGGAACAATATTCCATGGTCGGGTTCCTAGCCCAATGTGGAGCACACCCCAAGGCGGGTGTGTATATCCGCAACAGGGGGCTCCCCTGCGCGGTTCTGCAACACCTTAGCAGCACACACATGACGGTAATGCACATTGGGGGGTGGGACTTATATATGGTGTTTGCGTACTTCCAGTATAGTGACCCTATTGACCCATACCTGCACCGGCTCGGGAATATTCTTGACCGGTTGCGGGGGGCTCGGGTGGTCATCTGCGCAGACACTAATGCCCACTCGCCATTGTGGCATTCGCTGCCCAGGCACTACGTCGGTCGGGGTCAGGAAGTGGCTGACCGCCGCGCCAAGATGGAGGATTTCATTGGGGCGAGGCGGTTGGTCGTCCATAACGCGGAGGGCCACCTGCCGACCTTCTGTACGGCGAACGGAGAATCTTATGTCGATGTCACGCTGTCCACGCGGGGAGTACGCGTGTCTGAATGGCGCGTAACTGATGAATCATCGAGCGATCACCGGCTCATCGTGTTTGGGGTGGGGGGCGGTACAACAGGGGAGCGGGACGAGGACGAGGAGGCGCGGAGCGATTTGAGGCCGTGCGAGCCGTGTGCACTGCGTCGGTACCGGGACCGTGGGGTGGATTGGGACCTCTTCAGATCGCGGATCCATGAGCGATTGGGGAGTCTGGACCTCGAGGAACCTGCGGCTGCCCTTTGCGAAAAATTTACCGGGGTTATAGCACGCACCGCTGCAGAATGCTTAGGATCAGTGAAAGCAGATAGAACTGACAGGGGTTATGAGTGGTGGACCCCGGTACTCGATAAGCTTAGGGTAGCCCAGGGTAAGGCCAGGCGTCGATGGCAAAAGGCCCGCAGAACAGGGGGTGAGGAAGAGGAGCAGGCTGGGAGAGTCTTCCGCGACCGCAGGCGCGAGTATCGAAGAGCGATGCATGACGCCGAGACCGCCTTTTACCGGGAGATCGCTGAAGGGGGAAACCGTGACCCGTGGGGACTAGCGTATCGGACGGCGAGTGGTAGGCGACGCGCACCAACCAATGTGGTTAACGGGGTGGAGTATGCGGGGCGGTGCTCGGATGATGTGAGTGGGGCCATGTGCACCTTGATGTGGGCGCTGTGTCCGGATGACTATATGTCTCGGGACACTCCGTACCATTCACGGGTGCGTATCATGGCCGCGCTCCCCCCATCCGGGCGGGACGCAGACCCGCTGAGCAAAGACTCCCTTCGTGCCATAATTGGCTCACTGAGGAATACCGCACCGGGCATCGACGGTTTAACGGCGCGCATTATCAAAAAGGCACTTCCGGCTGCTGAGGCCGAGTTCGCGGCCGTATACGCACGGTGCGTTGTGGAGGGGACCTTCCCACCGGTGTGGAAGGATGGCCGCCTACTTGTTCTGTCAAAGGGGAATGGCAGGCCCTTAACGGACCCCAAGGCGTATCGCCCGGTCACCTTGCTGCCGGTCCTGGGAAAGATCCTGGAGAGGGTACTATTGCAGTGTGCTCCTGGCCTCACCCAAAGTATTAGTCCGCGCCAGCACGGGTTCTCTCCTGGATGCTCGACGGTGACGGCGCTGCAAACTCTGCTGGACGTGTCGCGCGCCTCGGAGCAGAGGTACGTAATGGCCATATTCTTGGACATCAGTGGCGCTTTCGATAACGCGTGGTGGCCCATGATAATGGTGAAGGCCAAGCGGAACTGTCCGCCCAACATCTATCGGATGCTGACGGACTATTTCCGCGGACGCCGTATCGCCGTTGTCGCGGGGGACTGTGCGGAATGGAAGGTGTCCACGATGGGCTGTCCGCAGGGTTCAGTGCTCGGGCCGACGCTCTGGAACGTTCTGATGGATGACCTGCTCGCCTTGCCGCAGGGGGTAGAGGGAACAGAGATGGTCGCCTATGCCGATGACGTGACGGTACTGGTTAGGGATGACTCACGGGCGCAGCTTGAGAGGAGAGCGCACGCCGTGCTAGGACTCGCAGAGGGTCCGGCTTTGCGTGTCTTGTACATGGGCACTTATGTTACAACCCTTACCTATGCGGCGGCCGTATGGTACTTGCGGGCTGCTGTGCACGTCGTGCGCAGCGTGCTGCTTAGGACGCAGCGCCCGTCGTTGACACTGCTAACGAAGGCATATCGCTCGTGCAGCACGGCTGCTTTGCCGGTGTTGGCGGGCGTCCTGCCGGCGGACCTGGAGGTAACTCGTGCTGGACGGAGGATGCGGGAGTGCGGAGGATTGGCGCGGGAGTTGGCGGCGGAAAGACGACGGCGGATTGACAGTGATGCCTTGGCAATTTGGCAGGACAGGTGGGTGTCTGAGGGTAAGGGGAGGGAACTGTTCAAGTTCTTTCCCGATGTTGTGGGCAGGAGGAAGGCAACGTGGATAGAGCCGGATTATCAGACCTCGCAGATCCTCACGGGACACGGGATCTTCAATAAGCGGTTGGCGGATATGCGACTGAGGGAGGGGCATGCTTGCGACTGCGGGGCGGTTGAGGAGGACAGGGACCATGTCCTGTGGGAGTGCCCTCTATACGACGAAATCCGGGGCAGGATGCTCGATGGAATCTCGCGGTCTGAGGTGGGCCCAGTTTACCACGCGGACCTGGTCAGGGACGAGCATAACTTTCGGCTCTTGCTCGAGTTCGCGCATGCATGGCACACGGCGCGCACTGCGCGCGAATCACGAGGACTGCCTGGCGACGAAGAATATTTTCTAGCTAAGCCACCGGACACAGGAAAATTTCTGGCGCTAAAAACGAAATTATTATCAACATTTGAAGAGTCCAAAAGTCGACAAATTGAAAGACTCATAGGAGAGATGGAACTAGGAGATCAAAAACCTTCTCAGCTATTGCACCGCATGAGAGAGTTAGCCAGAGATAAAGTACCGGACGACACCCTGCGAGTGTTATGGCAAGGTCACTTACCTACAACATTGAGGGCAATCCTTACAGTCACTGAAACAAAAGATTTAGACAACCTCGCCATGATTGCGGATAATGTTGCGGAGGCCACGCGAGTTAACCACATCTCTGAGGTCGTTAATCAGCAAACCTCGAATATGGAACGACCATCAACAAGCGACACGTCTTTAATTTTAGCGGAAATAGCAAAATTAAGCGTCAGAATGACTAACATGGAGCAGTCACGATCCAGACAAAACTACTTTGATCGTAACCGTGATAGAAGTGGCTCACGATCTTCATCGAGACGCCGTACCCCACAGAACCCCAACTGGTTATGTTACTACCATTACAAGTTCCGTCAGAATGCTCAGAAATGCGTCCAACCATGTGCATGGAAACCAAGTTCGGAAAACTAG

Protein

MGPATEGYTVAKKFIKGNRPEASGLPLESERTGDNPTVRGSAGADPVGQDAPGWTCQFCERSFSTNRGLGVHKRRAHPVETNTDAAPMMVKRRWHGEEVDLLARTEARLLAERGQCSGGDLFGELPGFGRTLEAIKGQRRREPYRELVQAHLARSGSQPGPSSGGCSAEPDFRRASGAEEAGEERCAEDAAAYDPSAVGQMSPDAARVLSELLEGAGRRRACRAMRPKTAGRRNDLHDDRTASAHKTKRQKRRAEYARVQELYKKCRSRAAAEVIDGACGPPVWTVLWRIPQYWTRCLGIAGRSCGRECHVAVLDFAKAFDTVSHEALVELLRLRGMPVQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKLLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVSKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARATAKSEKILAPGLSSSAPVTPADPVAGVPDFPIPVASGAPTGPLDVAAQGRLELLEQANRAVRGIMSVATAASKLNKSEVNVISEFGRDILAVVGALGIQLSEKELVVERLRSAEASARRDALVPSMAAGAAAGSGTGPATFATVLKTGPGGVPRSIGASQGPSLAFYPSEGNAELKTAEDTKKEVKKAIDPKSMAIGIRSVRKVGNAGVVVQTTSPAAAVKLRNAAPPSLRVTEPRRRQPLVAVNGVEGDPSFEEVIECLASQNLDPEEWPLTRIRAELTGAFKKGRRQSNNTTVVFNASPRIRDALVKLGRVSSMDIRPRLRIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGVYIRNRGLPCAVLQHLSSTHMTVMHIGGWDLYMVFAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGARRLVVHNAEGHLPTFCTANGESYVDVTLSTRGVRVSEWRVTDESSSDHRLIVFGVGGGTTGERDEDEEARSDLRPCEPCALRRYRDRGVDWDLFRSRIHERLGSLDLEEPAAALCEKFTGVIARTAAECLGSVKADRTDRGYEWWTPVLDKLRVAQGKARRRWQKARRTGGEEEEQAGRVFRDRRREYRRAMHDAETAFYREIAEGGNRDPWGLAYRTASGRRRAPTNVVNGVEYAGRCSDDVSGAMCTLMWALCPDDYMSRDTPYHSRVRIMAALPPSGRDADPLSKDSLRAIIGSLRNTAPGIDGLTARIIKKALPAAEAEFAAVYARCVVEGTFPPVWKDGRLLVLSKGNGRPLTDPKAYRPVTLLPVLGKILERVLLQCAPGLTQSISPRQHGFSPGCSTVTALQTLLDVSRASEQRYVMAIFLDISGAFDNAWWPMIMVKAKRNCPPNIYRMLTDYFRGRRIAVVAGDCAEWKVSTMGCPQGSVLGPTLWNVLMDDLLALPQGVEGTEMVAYADDVTVLVRDDSRAQLERRAHAVLGLAEGPALRVLYMGTYVTTLTYAAAVWYLRAAVHVVRSVLLRTQRPSLTLLTKAYRSCSTAALPVLAGVLPADLEVTRAGRRMRECGGLARELAAERRRRIDSDALAIWQDRWVSEGKGRELFKFFPDVVGRRKATWIEPDYQTSQILTGHGIFNKRLADMRLREGHACDCGAVEEDRDHVLWECPLYDEIRGRMLDGISRSEVGPVYHADLVRDEHNFRLLLEFAHAWHTARTARESRGLPGDEEYFLAKPPDTGKFLALKTKLLSTFEESKSRQIERLIGEMELGDQKPSQLLHRMRELARDKVPDDTLRVLWQGHLPTTLRAILTVTETKDLDNLAMIADNVAEATRVNHISEVVNQQTSNMERPSTSDTSLILAEIAKLSVRMTNMEQSRSRQNYFDRNRDRSGSRSSSRRRTPQNPNWLCYYHYKFRQNAQKCVQPCAWKPSSEN

Uniprot

NA

ProteinModelPortal

NA

PDB

6A42 E-value=4.24858e-122, Score=1128

KEGG

101741146 no KO assigned | (RefSeq) uncharacterized LOC101741146

GO

GO:0046872 GO:0006396 GO:0005515 GO:0016891 GO:0008235 GO:0019538 GO:0030145 GO:0015923 GO:0005634 GO:0006260 GO:0003676

Length:

2081

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.01618

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00007

outside

1 - 2081

Pi

21.47983

Theta

19.293272

Tajima's D

0

CLR

0.258119

CSRT

0.369881505924704

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree