Silkworm Genome Informatics Database

Gene

KWMTBOMO06307

Annotation

PREDICTED:_mucin-2-like_[Amyelois_transitella]

Location

Bomo_Chr11(-):4497090-4499561 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.543

CDS

ATGTGTAAAACCAACTTCAAATTACACGCACAATTAAGATCAGAGAAAGTGTTGGCGGCAGCAGTTCAGACTACAGATGCAAAACAGTGGCACAGAAGATTGGGACACATTAATAGTAATGATTTGCAGAAGATGAAAAATGGTGCTGTAGACGGAATATCGTTTGATATGAAGGCTGATATAAAAAAAATCCAACTGTCAAATGAACCAGAGTCTTGGTTTGAAGACATAACTTATGATGAAGCTACGAACGGCCCAGAGAAAGACAAGTGGCAGCAGGCTATGTCTGATGAGCTTCAAGCATTTGAAGACAACCAAGCGTGGGAGATTGTTAAACAAGAGGAGGCAGATAGAGTAGTACAGTGCAAATGGGTGTTCAAGAAAAGGCCAGAAAGCAATAACAGTGTTAGTAAGACTATGACTAATGCTTTGAAGAAAAGCTAA

Protein

MCKTNFKLHAQLRSEKVLAAAVQTTDAKQWHRRLGHINSNDLQKMKNGAVDGISFDMKADIKKIQLSNEPESWFEDITYDEATNGPEKDKWQQAMSDELQAFEDNQAWEIVKQEEADRVVQCKWVFKKRPESNNSVSKTMTNALKKS

Uniprot

A0A2I0JBJ2 A0A1S3Z1W1 A0A2Z6MCE5 A0A1Y1IQX0

Pubmed

24807620 24865297

EMBL

PGOL01001846 PKI53619.1 DF973424 GAU30376.1 DF237963 GAQ92442.1 + More

Proteomes

UP000233551 UP000084051 UP000054558

Pfam

PF07727   RVT_2        + More
PF00665   rve
PF13976   gag_pre-integrs
PF14244   Retrotran_gag_3
PF03732   Retrotrans_gag
PF00098   zf-CCHC
PF13961   DUF4219

Interpro

IPR001584   Integrase_cat-core        + More
IPR012337   RNaseH-like_sf
IPR013103   RVT_2
IPR025724   GAG-pre-integrase_dom
IPR036397   RNaseH_sf
IPR039537   Retrotran_Ty1/copia-like
IPR029472   Copia-like_N
IPR005162   Retrotrans_gag_dom
IPR001878   Znf_CCHC
IPR036875   Znf_CCHC_sf
IPR025314   DUF4219

SUPFAM

SSF53098 SSF53098 + More
SSF57756 SSF57756

Gene 3D

3.30.420.10

ProteinModelPortal

A0A2I0JBJ2 A0A1S3Z1W1 A0A2Z6MCE5 A0A1Y1IQX0

KEGG

NA

GO

GO:0003676 GO:0015074 GO:0000943 GO:0008270

PANTHER

PTHR11439

Length:

147

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.37462

outside

1 - 147

Pi

175.08371

Theta

155.406823

Tajima's D

0.396262

CLR

0.005405

CSRT

0.486825658717064

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics