Silkworm Genome Informatics Database

Gene

KWMTBOMO06306

Annotation

T18197_reverse_transcriptase-like_protein_-_silkworm

Location

Bomo_Chr11(+):4437702-4451713 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.138

CDS

ATGATGGTGAAGCGGCGGTGGCATGGCGAGGAAGTCGACCTCCTCGCTCGCACCGAGGCCAGGTTGCTCGCTGAGCGGGGTCAGTGCTCGGGTGGAGACCTCTTTGGCGCGCTCCCAGGGTTTGGAAGAACTCTGGAAGCGATTAAGGGACAACGGCGGAGGGAGCCTTATCGGGCATTGGTGCAAGCGCACCTTGCCCGATCTGGTTCCCAGCCGGGTCCCTCGTCAGGGGGGTGCTCGGCCGAGCCTGACTTCCGGCGGGCTTCTGAAGCTGAGGAGGCGGGCGAGGAACGATGCGCCGAAGACGCCGCTGCCTATGATCCATCCGCAGTCGGTCAGATGTCGCCCGATGCCGCTCGGGTTCTCTCCGAACTCCTTGAGGGTGCGGAGAGAAGACGAGCGTGCAGGGCTATGAGACCCAAGACTGCAGGGCGGCGAAACGATTTGCACGATGATCGGACAGCTAGTGCCCACAAAACCAATAGACAAAAGCGCAGAGCAGAGTACGCGCGTGTGCAGGAACTGTACAAGAAGTGTCGCAGCAGAGCAGCAGCTGAGGTGATCGATGGCGCGTGTGGGGGGCGTGCGGAGTGGCACGGGGGCAATCGCGACTACACCCAGCTGTGGAAGCCGATCTCGGTGGAAGAGATCAAGGCCTCCCGCTTTGACTGGCGAACTTCGCCGGGCCCGGACGGTATACGTTCGGGTCAGTGGCGTGCGGTTCCTGTGCACTTGAAGGCGGGAATGTTCAATGCATGGATGGCACGAGGCGAAATACCCGAAATTCTACGGCAGTGCCGAACCGTCTTTGTGCCTAAGGTGGAGAGACCAGGTGGACCGGGGGAATATCGACCGATCTCGATCGCGTCGATTCCCCTGAGACACTTTCACTCCATCTTGGCCCGGAGGCTGTTGGCTTGCTGCCCCCCTGACGCACGACAGCGTGGATTTATCTGCGCCGACGGTACGCTGGAGAATTCCGCAGTACTGGACGCGGTGCTTGGGGATAGCAGGAAGAAGCTGCGGGAATGTCACGTGGCGGTGCTAGACTTCGCCAAGGCATTTGACACTGTGTCTCACGAGGCACTTGTCGAATTGCTGAGGTTGAGGGGCATGCCCGAACAGTTCTGCGGCTACATTGCTCACCTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTGAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCAATACTCTTCAACGTGGTGATGGACCTCATCCTAGCTTCCCTGCCGGAGAGGGTCGGGTATAGGTTGGAGATGGAACTCGTGTCCGCTCTGGCCTATGCTGACGACCTAGTCCTGCTTGCGGGGTCGAAGGTAGGGATGCAGGAGTCCATCTCTGCTGTGGACTGTGTTGGTAGGCAGATGGGCCTACGCCTGAATTGCAGGAAGAGCGCGGTTCTGTCTATGATACCGGATGGCCACCGCAAGAAGCATCACTACATGACTGAGCGAACCTTCAATATTGGAGGTAAGCCGCTCAGGCAGGTGAGTTGTGTTGAGCGGTGGCGATATCTTGGTGTCGATTTTGAGGCCTCTGGATGCATGACATTAGAGCATAGTATCAGTAGTGCTCTGAATAACATCTCAAGGGCACCTCTCAAACCCCAACAGAGGTTGGAGATTTTGAGAGCTCATCTGATTCCGAGGTTCCAGCACGGTTTCGTGCTTGGAAACATCTCGGATGACAGATTGAGAATGCTCGATGTCCAAATCCGGAAAGCAGTCGGACAGTGGCTTGGGCTACCGGCGGATGTGCCCAAGGCATACTATCACGCCGCAGTTCAGGACGGCGGCTTAGCGATCCCATCGGTGCGAGCGACCATCCCGGACCTCATTGTGAGGCGTTTCGGGGGGCTCGACTCGTCACCATGGTCAGTGGCAAGAGCCGCCGCCAAATCTGATAAGATTCGTAAGAAACTGCGGTGGGCTTGGAAACAGGCATACCGTTCGTGCAGCACGGCTGCTTTGCCGGTGTTGGCGGGCGTCCTGCCGGCGGACCTGGAGGTGACTCGTGCTGGACGGAGGATGCGGGAGTGCGAAGGATTGGCGCGGGAGTTGGCGGCGGAGAGACGACGGCGGATCGACAGTGATGTCTTGGCAATTTGGCAGGACAGCCCAACCGCAGTGGGTTTACCTGTTGCAAAAAAGTCAGATAAAGAGAATAGACCTGAAGCCTCTGGCCTCCCGCTGGAGTCAGAGAGGACAGGCGATAACCCGACTGTGCGGGGTTCCGCCGGCGCAGATCCTGTGGGTCAGGATGCGCCTGGTTGGACCTGCCAGTTCTGCGAACGATCCTTTTCGACCAACAGGGGTTTGGGTGTCCACAAGCGTAGAGCCCACCCTGTTGAGACCAATACGGATGCCGCTCCGATGATGGTGAAGCGGCGGTGGCATGGCGAGGAAGTCGACCTCCTCGCTCGCACCGAGGCCAGGTTGCTCGCTGAGCGGGGTCAGTGCTCGGGTGGAGACCTCTTTGGCGCGCTTCCAGGGTTTGGAAGAACACTGGAAGCGATTAAGGGACAACGGCGGAGGGAGCCTTATCGGGCATTGGTGCAAGCGCACCTTGCCCGATATGGGTCCCAGCCGGGTCCCTCGTCAGGGGGGTGCTCGGCCGAGCCTGACTCCCGGCGGGCTTCTGGAGCTGAGGAAGCGAGCGAGGAACGATGCGCCGAAGACGCCGCTGCCTATGATCCATCCGCAGTCGTTCAGATGTCGCCCGATGCCGCTCGGGTTCTCTCCGAACTCCTTGAGGGTGCGGGGAGAAGACGAGCGTGCAGGGCTATGAGACCCAAGACTGCAGGGCGGCGAAACGATTTGCATGATGATCGGCCAGCTAGTGCCCACAAAACCAAAAGACAAAAGCGCAGAGCGGAGTACGCGCGTGTGCAGGAACTATACAAGAAGTGTCGCAGCAGAGCAACAGCTGAAGTGATCGATGGCGCGTGTGGGGGTGTCGGACACTCGCTCGAGGAGATGGAGGCCTATTGGCGACCTATCCTCGAGAGGATGTCCGACGCACCTGGGCCTACACCGGAAGTTCTTCACGCCCTAGGGCGTGCGGAGCGGCACGGGGGCAATCGCGACTACACCCAGCTGTGGAAGCCGATCTCGTGGCGTGCGGTTCCTGTGCACTTGAAGGCGGAAATGTTCAATGCATGGATGGCACGAGGCGAAATACCCGAAATTCTACGACAGTGCCGAACCGTCTTTGTGCCTAAGGTGGAGAGACCAGGTGGACCGGGGGAATATCGACCGATCTCGATCGCGTCGATTCCCCTGAGACACTTTCACTCCATCTTGGCCCGGAGGCTGTTGGCTTGCTGCCCTCCTGACGCACGACAGCGTGGATTTATCTGCGCCGACGGTACTCTGGAGAATTCCGCAGTACTGGACGCGGTGCTTGGGGATAGCAGGAAGAAGCTGCGGGAATGTCACGTGGCGGTGCTAGACTTCGCCAAGGCATTCGACACTGTGTCTCACGAGGCACTTGTCGAATTGCTGAGGTTGAGGGGCATGCCCGAACAGTTCTGCGGCTATATTGCTCACCTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTGAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCAATACTCTTCAACGTGGTGATGGACCTCATCCTAGCTTCCCTGCCGGCGAGGGTCGGGTATAGGTTGGAGATGGAACTCGTGTCCGCTCTGGCCTATGCTGACGACCTAGTCCTGCTTGCGGGGTCGAAGGTAGGGATGCAGGAGTCCATCTCTGGTGTGGAGTGTGTCGGTAGGCAGATGGGCCTTCGCCTGAACTGCAGAAAAAGCGCTGTCTTGTCTATGATACCAGATGGCCACCGCAAGAAGCATCACTACCTGACTGAGCGAACCTTCAATATTGGAGGTAAGCCGCTCAGGGCATCTCTCAAACCCCAACAGAGGTTGGAGATTTTGAGAGCTCATCTGATTTTGAGATTCCAGCATGGTTTCGAGCTTGGAAACATCTCGGATGACAGATTGAGAATGCTCGATGTCCAAATCCGGAAAGCAGTCGGACAGTGGCTTAGGCTACCGGCGGATGTGCCCAAGGCGTACTATCACGCCGCAGTTCAGGACGGCGGCTTAGCGATCCCATCGGTGCGAGCGACCATCCCGGACCTCATTGTGAGGCGTTTCGGGGGGCTCGACTCGTCACCATGGTCAGTGGCAAGAGCCGCCGCCAAATCTGATAAGATTCGTAAGAAACTGCGGTGGGCTTGGAAACAGGAGGAGAGGGGGCAATTTTCCCCTCGGGTCTCTTTGGCGCGCTCGCCGCCTAGGGGACTGACTGCACCTCTGCCGGCGCCTATGCCGCCGCCGGCCCCCCGGGGGGCTAAAGCGGGGGCAGCTGTGAGTGCCAAAGGCTGGAGGACCGGCCTGCATATTCCAGTTACTCCTGGACTGTCGTCCTCGGCGCCCGTCACCCCGGTTGACCCAGTGGCTGGTGTCCCTGACTTCCCCACTCCTGTAGCGTCAGGGGCTCCGACGGGACCCCTTGATGTAGCAGCGCAGGGGAGGCTGGAGCTGCTCGAGCGGGCAAACCGAGCGGTGCGTGGGATAATGTCGGTGGCGACGGCGGCATCCAAGCTCAACAAGTCGGAGGTCAATGTGATCTCCGAATTTGGTCGCGATATCCTTGCCGTAGTTGGGGCCCTCGGGATCCAGCTCTCAGAAAAGGAGCTGGTGGTCGAGAGGCTCCGCTCGGCAGAGGCCTCCGCACGGCGTAACTCCTTGGTACCTTCGATAGCTGCTGGTGCGGCGGCCGGGTCTGGGATTGGGCCTGCGACTTTTGCCACTGTCATCAGGACGGGCCCTGATGGGGTCCCGAGGTCCATTGGGACCTCTCAGGGGCCTTCTTTGGCATTTTACCCGTCCGAGGGCAATGTAGAACTAAAGACAGCGGAGGATACGAAGAAGGAGGTGAAAAAGGCCATCGATCCCAAGTCGATGGCAATTGGAATACGGAGTGTAAGGAAGGTCGGGAATGCGGGGGTACTGGTGCAGACCACGTCCCCCGCGGCTGCAGTTACGCTGAGAAATGCGGCCCCGCCATCACTTAGAGTCACCGAACCCAGGCGCCGACAGCCCTTAGTGGCTGTTAATGGAGTGGAGGGTGACCCCTCTTTCGAGGAGCCGGGTCCCTCGTCAGATGGGTGCTCGGCCGAGCCTGACTTCCGGCGGGCTTCTGAAGCTGAGGTAGCGGGCGTGGAACGATGCGCCGAAGACGCCGCGGCCTATGATCCATCCGCAGTCGGTCAGATGTCGCCCGATGCCGCTCGGGTTCTTTCGGAGAGAAGACGAGCGCGCAGGGTTATGAGACCCAGGACTGCAGGGCGGCGAAACGATTTGAACGATGATCTGGCTGCTAGTGCCCACAAAGCAAAAAAACAGAAGCGCAGAGCGGAGTACGCGCGTGTGCAGGAGCTGTACAAGTGTCGCAGCAGAGCAGCAGCTGAAGTGATCGATGGCGCGTGTAGGGGTGTCGGACACTCGCTCGAGGGGATGAGAGGCTTATTGGCGACCTATCCTCGAGAGGGTGTCCGACGCACCTGGGCCTACATCGGAAGCTCTTCATGTCTTATGGCGTGCGGAGCAGCACGGGGGCAATCGCGACTACACTCAACTGTGGAGGCCGATCTCAGTGGAAGAGATCAAGGCTTCCCCCGCTTTGACTGGCGGACTTCACCGGGCCCGGACGGTATACGTCCGGCAAAAGAAGATTAA

Protein

MMVKRRWHGEEVDLLARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHLARSGSQPGPSSGGCSAEPDFRRASEAEEAGEERCAEDAAAYDPSAVGQMSPDAARVLSELLEGAERRRACRAMRPKTAGRRNDLHDDRTASAHKTNRQKRRAEYARVQELYKKCRSRAAAEVIDGACGGRAEWHGGNRDYTQLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAGMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYMTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCMTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLGLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQAYRSCSTAALPVLAGVLPADLEVTRAGRRMRECEGLARELAAERRRRIDSDVLAIWQDSPTAVGLPVAKKSDKENRPEASGLPLESERTGDNPTVRGSAGADPVGQDAPGWTCQFCERSFSTNRGLGVHKRRAHPVETNTDAAPMMVKRRWHGEEVDLLARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHLARYGSQPGPSSGGCSAEPDSRRASGAEEASEERCAEDAAAYDPSAVVQMSPDAARVLSELLEGAGRRRACRAMRPKTAGRRNDLHDDRPASAHKTKRQKRRAEYARVQELYKKCRSRATAEVIDGACGGVGHSLEEMEAYWRPILERMSDAPGPTPEVLHALGRAERHGGNRDYTQLWKPISWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPARVGYRLEMELVSALAYADDLVLLAGSKVGMQESISGVECVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRASLKPQQRLEILRAHLILRFQHGFELGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQEERGQFSPRVSLARSPPRGLTAPLPAPMPPPAPRGAKAGAAVSAKGWRTGLHIPVTPGLSSSAPVTPVDPVAGVPDFPTPVASGAPTGPLDVAAQGRLELLERANRAVRGIMSVATAASKLNKSEVNVISEFGRDILAVVGALGIQLSEKELVVERLRSAEASARRNSLVPSIAAGAAAGSGIGPATFATVIRTGPDGVPRSIGTSQGPSLAFYPSEGNVELKTAEDTKKEVKKAIDPKSMAIGIRSVRKVGNAGVLVQTTSPAAAVTLRNAAPPSLRVTEPRRRQPLVAVNGVEGDPSFEEPGPSSDGCSAEPDFRRASEAEVAGVERCAEDAAAYDPSAVGQMSPDAARVLSERRRARRVMRPRTAGRRNDLNDDLAASAHKAKKQKRRAEYARVQELYKCRSRAAAEVIDGACRGVGHSLEGMRGLLATYPREGVRRTWAYIGSSSCLMACGAARGQSRLHSTVEADLSGRDQGFPRFDWRTSPGPDGIRPAKED

Uniprot

NA

ProteinModelPortal

NA

PDB

6AR3 E-value=0.0410017, Score=93

KEGG

101741146 no KO assigned | (RefSeq) uncharacterized LOC101741146

GO

GO:0046872 GO:0006396 GO:0005515 GO:0016891 GO:0008235 GO:0019538 GO:0030145 GO:0015923 GO:0005634 GO:0006260 GO:0003676

Length:

1948

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.032

Exp number, first 60 AAs:

0.0013

Total prob of N-in:

0.00023

outside

1 - 1948

Pi

1.371643

Theta

0.80393

Tajima's D

1.293945

CLR

0.868292

CSRT

0.805759712014399

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree