Silkworm Genome Informatics Database

Gene

KWMTBOMO06303

Annotation

T18197_reverse_transcriptase-like_protein_-_silkworm

Location

Bomo_Chr11(+):4393242-4394766 View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Alternative Name

Retrovirus-related Pol polyprotein from type I retrotransposable element R2

Location in the cell

Mitochondrial Reliability : 1.501 Nuclear Reliability : 1.883

CDS

ATGATGGTGAAGCGGCGGTGGCATGGCGAGGAAGTCGACCTCCTCGCTCGCACCGAGGCCAGGTTGCTCGCTGAGCGGGGTCAGTGCTCGGGTGGAGACCTCTTTGGCGCGCTTCCAGGGTTTGGAAGAACTCTGGAAGCGATTAAGGGACAACGGCGGAGGGAGCCTTATCGGGCATTGGTGCAAGCGCACCTTGCCCGATTTGGTTCCCAGCCGGGTCCCTCGTCAGGGGGGTGCTCGACCGAGCCTGACTTCCGGCGGGCTTCTGGAGCTGAGGATGCGGGCGAGGAACGATGCGCCGAAGACGCCGCTGCCTATGATCCATCCGCAGTCGGTCAGATGTCGCCCGATGCCGCTCGGGTTCTCTCCGAACTCCTTGAGGGTGCGGGGAGAAGACGAGCGTGCAGGGCTATGAGACCCAAGACTGCAGGGCGGCGAAACGATTTGCACGACGATCGGACAGCTAGTGCCCACAAAACGAGAAGACAAAAGCGCAGAGCAGAGTACGCGCGTGTGCAGGAACTGTACAAGAAGTGTCGCAGCAGAGCAGCAGCTGAAGTGATCGATGGCGCGTGTGGGGGTGTCGGACACTCGCTCGAGGAGATGGAGACCTATTGGCGACCTATCCTCGAGAGAGTGTCCGACGCACCTGGGCCTACACCGGAAGCTCTGCACGCCCTAGGGCGTGAGGAGCGGCACGGGGGCAATCGTGACTACACCCAGCTGTGGAAGCCGATCTCGGTGGAAGAGATCAAGGCCTCCCGCTTTGACTGGCGAACTTCGCCGGGCCCGGACGGTATACGTTCGGGTCAGTGGCGTGCGGTTCCTGTGCACTTGAAGGCGGAAATGTTTAATGCATGGATGGCACGAGGCGAAATACCCGAAATTCTACGGCAGTGCCGAACCGTCTTTGTGCCTAAGGTGGAGAGACCAGGTGGACCGGGGGAATATCGACCGATTTCGATCGCGTCGATTCCCCTGAGACACTTTCACTCCATCTTGGCCCGGAGGCTGTTGGCTTGCTGCCCCCCTGACGCACGACAGCGCGGATTTATCTGCGCCGACGGTACGCTGGAGAATTCCGCAGTACTGGACGCGGTGCTTGGGGATAGCAGGAAGAAGCTGCGGGAATGTCACGTGGCGGTGCTAGACTTCGCCAAGGCATTTGACACTGTGTCTCACGAGGCACTTGTCGAATTGCTGAGGTTGAGGGGCATGCCCGAACAGTTCTGCGGCTACATTGCTCACTTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTGAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCAATACTCTTCAACGTGGTGATGGACCTCATCCTAGCTTCCCTGCCGGAGGGTCGGGTATAG

Protein

MMVKRRWHGEEVDLLARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHLARFGSQPGPSSGGCSTEPDFRRASGAEDAGEERCAEDAAAYDPSAVGQMSPDAARVLSELLEGAGRRRACRAMRPKTAGRRNDLHDDRTASAHKTRRQKRRAEYARVQELYKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGREERHGGNRDYTQLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPEGRV

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Endonuclease Hydrolase Nuclease Nucleotidyltransferase RNA-directed DNA polymerase Transferase Transposable element

Feature

chain Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Uniprot

V9H052 Q8MY64 Q5K671 K7JR53 A0A023EXT5 A0A023EX96 + More
K7JWL4 K7JX42 A0A139W9T2 A0A0R4WRV8 C6F3W3 B8Y0J4 Q03279 W5N206 A0A3Q2Y7G9 A0A096XIE1 Q76IN8 A0A1V1H6Q5

Pubmed

2439905 14999096 20075255 25474469 18362917 19820115 + More
19350401 8383793 12949131 27662593

EMBL

M16558 AAB59214.1 AB076841 BAC01114.1 AF436853 AAQ04479.1 + More
AAZX01002322 GBBI01004906 JAC13806.1 GBBI01004905 JAC13807.1 AAZX01023287 AAZX01023288 KQ971997 KYB24671.1 JQ082370 AFM44926.1 EU854578 ACJ46647.1 FJ461304 ACJ71597.1 L00951 AHAT01017236 AHAT01017237 KF925878 AHN53448.1 AB097124 BAC82592.1 LC155026 BAX24488.1

Proteomes

UP000002358 UP000007266 UP000018468 UP000264820

PRIDE

V9H052 Q8MY64 Q5K671

Pfam

PF00078 RVT_1

Interpro

IPR013087 Znf_C2H2_type + More
IPR000477 RT_dom

ProteinModelPortal

V9H052 Q8MY64 Q5K671 K7JR53 A0A023EXT5 A0A023EX96 + More
K7JWL4 K7JX42 A0A139W9T2 A0A0R4WRV8 C6F3W3 B8Y0J4 Q03279 W5N206 A0A3Q2Y7G9 A0A096XIE1 Q76IN8 A0A1V1H6Q5

PDB

6AR3 E-value=0.0747548, Score=85

KEGG

NA

GO

GO:0003964 GO:0003676 GO:0004519

Length:

468

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02751

Exp number, first 60 AAs:

0.00129

Total prob of N-in:

0.01195

outside

1 - 468

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree