Silkworm Genome Informatics Database

Gene

KWMTBOMO06302

Pre Gene Modal

BGIBMGA001833

Annotation

PREDICTED:_endoribonuclease_Dcr-1_[Papilio_polytes]

Location

Bomo_Chr11(+):4345002-4383856 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.706

CDS

ATGGAACCATCGATCGACCATATGAAGGATAGCAAGAAAGAAACTAAATTAAGTGAAAACTATGTAACCGTGTCAGACGTTAGTGACGTTAATGAATTAAATGATAAAAGGAATGTAAAAGAAAAAGATGATAAAAAGATTGAATGGACTAAAACAGAGGACGTCGATGTTATCTCAAATAAGTCCGAAAGTGATTTGTGTCAGACTTGTAATGACAGTGATCCTTGTCCGAGTGAAGTGTCCAAAGTGTACAGTGATCTTAAGTACGATGTCAAGTGTGAGAACGAGACGGGTGGCAGTGTGGATCTTAGTTCGGCCATAGCTTTGATTAACAGGTACTGTGGAAAGCTCCCCTCCGACACGTTTACTAGGTTGGCCCCTCAGTGCTGGACGGACAAGGTTCGACTCCCTGGTCGGGACGGTGTCGAACGGGACGCATACATCTGCACGTTGAGGCTGCCACTGAACTGTCCTGTTAAATATAATATTGTCGGCCACCCGATGCCGAGTCGAGTGCTGGCGCGGCGCATGGTGGCGCTGCAGGCCTGCAGGATACTGCACAGGTCCGGAGAGCTGGACGACCAGCTGCAGCCCATAGGAAAAGAGAATTTCAAGGCAGCCGAACTCGATTCCCGCGACAGTTCGGAGGAGGGCGGCGAGCTGGCGCGGCCCGGCACCACCAAGCGCCGCCAGTACTACTACAAACGGACGGCGTCCGCGTTCACGGACTGTCAGCCGATAGAGGACAGCAGCGACACGGAGGTGGACCCGCCCGACGGCGTGCCCAGGACGATGCCGACGCCCAGACCGGAGCCAAAGCCAGGCGAGAAGAGGAACGTGCTGTACCTGTTGTCGAGCGAGCTGCGCTGCGCCCTGCCGGAGCGGTACAACACGCGCGGCCGCCGCCTGCACGCGCCGCAGCACGCGCACCACGCGCTCGCGCTGCTGCTAGCGCGGACCGACACGGACTTGCACTTGCAGGTGCCGGCGTTCCCGGTGTACACGCGCTCGGGCGAGGTCCGCGTGAGTCTGCAGCACGCGCCCGACGCCGACGTGAGGATCTCGCCGCGCAGAGGACGCCTCGTGCGCAGGTTCATGCGCTTCGTGTTCTCGGAGGTGCTGCGCGTCCGGCGGCGCGGCATGAGGCTGCAGAGCGAGGGCTCCACGCACAACAACTACTACGTGGTACCGACGATAAAGACCGTAAAGGAGGACGGCACTCCGAAAATCGATATCGACTGGGCGTTCTTGGAGCTGATATATAAACATACCGAGGAGAAGAAGAGCAGCGAAGTGGAGAAACCGATGCTGTGGAGGAACGAAGACGAGGGGGAGGAGGGAGATGAGGGGGAGCAGGGGGGTGACGTCAGCGGGAAGCAGGTGAAGCAGAAAGGGAAAGTGAAGAAGATGGACAACCCGCTCCTGAAGCCGGGTGAGGTGTTCGTGTTTGACCCCGACAAGTACAAGGAGGCGGTCGTGACGCCGTGGTACAGGAACCAGGACCAGCCGCAGTACTTCCTGGTGGCGGAGATATGCTGGCGCCTGAGTCCCGACTCCGTGTTCCCGTCAGCGAGCCACGCGACCTTCCGCGACTACTACCAGAACAAGTACGGCGTCACCATCACGCAGAGCAAGCAGCCGCTGCTGGACGTGGACCACACCAGCGCCAGACTCAACCTCCTCACTCCCAGATACGTGAACCGCAAGGGCGTGGCGTTGCCCGTGTCGTCGGAGCGCACCCGCCGCGCCAAGCGCGAGCGCCTCGACCAGAAGCAGCTCCTGCTGCCCGAGCTGTGCCGCGCGCATCCCTTCGCCGCGCCGCTGTGGGCCGCCACCGTTGCGCTGCCCTGTGCGCTCTACCGTATAAACGCGTTGCTGATCGCGGAGGAGATCCGTCGCTCGGTGGCCGTGGAGGTCGGGCTGGGCATCCCGCACCCGCACGCCCGCCCACCTCCGCTCGACTTCGGCTGGAGTCTCGCCGAGGTGTTGTCAGCCGACGCGGAGAAGAACGATAAGAAGAAAGAGGAAGAGTCGAAAAAGGAACAGAAAGAGAAGGAAGACAAGCCGGGGGACGACTCGGCCGAGACCAACACGGACGGTGCGGCCGACGAGGGCGGGGGGGCGGAGACGAAGACCATCAACGACATACTGCAGGAGAAGGAGGATGCGGAAAACGGCTTCGAGATTGGCACGTGGAGTAATGAGATGGCGTCCTCGATACCGGAGGACACTGACTTCGACGAATACCTAGAGCCTCTACCTCCGAATCTTACCTTCTGCACTTCCGCTTCCGGCAGCGCGAGCTGGTGCGACCCGATCCAGAAGCCGAAGAGCGAGTTCAACCCGACGCGGAGCTACTCGGTGGCGGACAGCGACTGCTCCTACATGTCCAGCGACTTCGACACCGACGACTCGGACCTGGACAGCGAGTGCAGCGACGAGGACACCGACAACAGCGGCTTCTGCAGCAGCAAGCACTCCAACGCGGCCATGGGAGTCCGCATAGAGTACAGGACGGCGCACGAGGCGGAGGCCGTGGACGTCGGCGGCAACGACAAGGTCAACCCGGCGCCCGCAGCGGACCCCCGGCTGGAGGAGCGGGACCTCGAGCTGCAGAGGCGCATCATCAGGGACGGGCTCGCGCCGCCAGAGCACATTGAGAGGTTTCGTTCCTCCGTGGCCGCACACAAGGAGCACATCACGAGGAACTGCTTGATACAACGTGACGAGCCCGTCGGGGAAGTATTGCCGCCGTTGATCACGCAAAAAACGACCTTAAACACACCGAACGTAGAGGCGAAAGTCCTCGAGATGTTCCCGTACGGCACACGAGAGCTGCGGCACGCGGACGACGGACGTCTCACGCTGCAGAGCGTCGAGCGAAACAAACGCTTCATACTGAATCATTTGAAAACGAACCTTAAGCCTGAAGAGATAAAGTCCTTATTCTGTTTCTCGATGAAGGACATAGACATTGACGCTCCCGATTACGTGGACGAGAAAATAACGAATATAGGCTTCGACGACGGAGACAAATACAATACGGGCAACGAATTTAAACCTTATTACGAAGATGATAAGGGCGGTCAGAAGAGGGAGTTCGACTTTGATTTTCAACCGGTTCTAGAAGGACATCCGGGTCCGAGTCCCAGCGTGATACTGCAGGCGCTGACGATGTCGAACGCCAACGACGGCATCAACCTCGAGAGGCTGGAGACCGTCGGGGACAGCTTCCTGAAGTTCGCGATCACCGCGTACCTGTACTGCGCGCACCCCAACGTGCACGAGGGGAAGCTCAGCCACATGCGGAGCAAGCAGGTGTCGAACCTGAACCTGTACCGTCTCGGGCGCAACAAGCAGCTCGGCAGCAGGATGATCGCCTCCAAGTTCGAGCCGCACGACAACTGGCTGCCCCCCTGCCACGAGCCGCCCCCCACCCTCCACCCCAAGCTCAACTTGAACGGTCAAGATAAGAAACAGAACGTCGATTCGTCTCCGGAGAACGTTGGATGCTTCATCCCTTATAACTTGATAACGCAGCACAGCATCCCGGACAAGTCGATAGCGGACTGCGTGGAGGCGCTGATCGGCGCCTACCTGCTGGAGTGCGGGCCGCGGGGCGCGCTGCTGTTCATGTCGTGGCTCGGCATCGCCGTGCTGCCGCGACACCTCGCCGCGCTCCCTCACACGCACTCGACCTCGGAGCAGCGGGAAACTTCGGCGGAGCCGCCCCCCGCGCGCCGCAGGGTCGGCTCGCTGCCCCCCTACAGGGACCGCCAGGGGAACTGGGTCCAGCAAGTGTACGGCGAACTGAAAGCTCCCCCGTCGCCGCTGCTCCGCTACGTGGAAGACCCTGAGGGTGAGCTGGAGAAGATGCTGTCCGGCTACGAGCAGCTGGAGCGCGTGCTGCAGTACAGGTTCCGGGACCGCTCGCTGCTGCTGCAGGCGATGACGCACGCGTCGCACCACAGGAACGTGCTCACCGACTGCTACCAGCGGCTCGAGTTCCTCGGCGACGCCATACTCGATTACCTGATCACGCGTCACCTGTACGAAGACAAGCGCTGCCACTCGCCGGGAGCCCTCACCGACCTCCGCTCGGCGCTGGTCAACAACACCATCTTCGCGACCCTGGCGGCCAGACACGGCTTTCACAAATATTTCAGACACATGTCTCCCGGCTTGAACGAGGTGCTGAAGAAATACGTGAAGATACAAGAGGAGAACGGACACTCTATAAGCGAAGAGCACTATCTGATCCACGAAGACGAGATGGAGCAGGCGGAGGACGTGGAGGTGCCCAAGGCGCTCGGAGACCTCTTCGAGTCGGTCGCCGGCGCCATATTCCTGGACTCGGGCATGTCGCTGGGCGCCGTGTGGAAGTCGTACGGGCGGCTGATGGGCCGCGAGCTGGAGGCCTTCAGCGCGGCCGCGCCCAAGTCGCCTGTCCGCGAGCTGCTCGAGGCCGAGCCCGACACCGCCAAGTTCGGGTGA

Protein

MEPSIDHMKDSKKETKLSENYVTVSDVSDVNELNDKRNVKEKDDKKIEWTKTEDVDVISNKSESDLCQTCNDSDPCPSEVSKVYSDLKYDVKCENETGGSVDLSSAIALINRYCGKLPSDTFTRLAPQCWTDKVRLPGRDGVERDAYICTLRLPLNCPVKYNIVGHPMPSRVLARRMVALQACRILHRSGELDDQLQPIGKENFKAAELDSRDSSEEGGELARPGTTKRRQYYYKRTASAFTDCQPIEDSSDTEVDPPDGVPRTMPTPRPEPKPGEKRNVLYLLSSELRCALPERYNTRGRRLHAPQHAHHALALLLARTDTDLHLQVPAFPVYTRSGEVRVSLQHAPDADVRISPRRGRLVRRFMRFVFSEVLRVRRRGMRLQSEGSTHNNYYVVPTIKTVKEDGTPKIDIDWAFLELIYKHTEEKKSSEVEKPMLWRNEDEGEEGDEGEQGGDVSGKQVKQKGKVKKMDNPLLKPGEVFVFDPDKYKEAVVTPWYRNQDQPQYFLVAEICWRLSPDSVFPSASHATFRDYYQNKYGVTITQSKQPLLDVDHTSARLNLLTPRYVNRKGVALPVSSERTRRAKRERLDQKQLLLPELCRAHPFAAPLWAATVALPCALYRINALLIAEEIRRSVAVEVGLGIPHPHARPPPLDFGWSLAEVLSADAEKNDKKKEEESKKEQKEKEDKPGDDSAETNTDGAADEGGGAETKTINDILQEKEDAENGFEIGTWSNEMASSIPEDTDFDEYLEPLPPNLTFCTSASGSASWCDPIQKPKSEFNPTRSYSVADSDCSYMSSDFDTDDSDLDSECSDEDTDNSGFCSSKHSNAAMGVRIEYRTAHEAEAVDVGGNDKVNPAPAADPRLEERDLELQRRIIRDGLAPPEHIERFRSSVAAHKEHITRNCLIQRDEPVGEVLPPLITQKTTLNTPNVEAKVLEMFPYGTRELRHADDGRLTLQSVERNKRFILNHLKTNLKPEEIKSLFCFSMKDIDIDAPDYVDEKITNIGFDDGDKYNTGNEFKPYYEDDKGGQKREFDFDFQPVLEGHPGPSPSVILQALTMSNANDGINLERLETVGDSFLKFAITAYLYCAHPNVHEGKLSHMRSKQVSNLNLYRLGRNKQLGSRMIASKFEPHDNWLPPCHEPPPTLHPKLNLNGQDKKQNVDSSPENVGCFIPYNLITQHSIPDKSIADCVEALIGAYLLECGPRGALLFMSWLGIAVLPRHLAALPHTHSTSEQRETSAEPPPARRRVGSLPPYRDRQGNWVQQVYGELKAPPSPLLRYVEDPEGELEKMLSGYEQLERVLQYRFRDRSLLLQAMTHASHHRNVLTDCYQRLEFLGDAILDYLITRHLYEDKRCHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLKKYVKIQEENGHSISEEHYLIHEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLGAVWKSYGRLMGRELEAFSAAAPKSPVRELLEAEPDTAKFG

Similarity

Belongs to the helicase family. Dicer subfamily.

Uniprot

A0A0N0PAS6 A0A2P1DMA2 W8B0V6 A0A0A1X9A0 A0A034VQZ7 A0A2W1B4P9 + More
Q17KP3 A0A1S4EZF9 Q49LL5 A0A1Q3G195 A0A1Q3G192 C5J8U0 A0A182GBM5 B0W7S3

Pubmed

26354079 24495485 25830018 25348373 28756777 17510324 + More
26483478

EMBL

KQ458486 KPJ05873.1 MG225430 AVK59441.1 GAMC01019654 GAMC01019648 + More
GAMC01019643 GAMC01019639 JAB86916.1 GBXI01015395 GBXI01006458 GBXI01004091 JAC98896.1 JAD07834.1 JAD10201.1 GAKP01014742 JAC44210.1 KZ150584 PZC70491.1 CH477222 EAT47261.1 AY713295 AAW48724.1 GFDL01001474 JAV33571.1 GFDL01001483 JAV33562.1 FN298876 CAX68236.1 JXUM01053041 JXUM01053042 JXUM01053043 KQ561760 KXJ77609.1 DS231855 EDS38217.1

Proteomes

UP000053268 UP000008820 UP000069940 UP000249989 UP000002320

Pfam

PF02170   PAZ        + More
PF00636   Ribonuclease_3
PF00271   Helicase_C
PF03368   Dicer_dimer
PF04851   ResIII

Interpro

IPR003100   PAZ_dom        + More
IPR027417   P-loop_NTPase
IPR036085   PAZ_dom_sf
IPR000999   RNase_III_dom
IPR038248   Dicer_dimer_sf
IPR005034   Dicer_dimerisation_dom
IPR036389   RNase_III_sf
IPR014720   dsRBD_dom
IPR001650   Helicase_C
IPR014001   Helicase_ATP-bd
IPR006935   Helicase/UvrB_N

SUPFAM

SSF101690   SSF101690        + More
SSF69065   SSF69065
SSF52540   SSF52540

Gene 3D

1.10.1520.10 3.30.160.380

CDD

cd00593  RIBOc
cd00048  DSRM
cd00079  HELICc

ProteinModelPortal

A0A0N0PAS6 A0A2P1DMA2 W8B0V6 A0A0A1X9A0 A0A034VQZ7 A0A2W1B4P9 + More
Q17KP3 A0A1S4EZF9 Q49LL5 A0A1Q3G195 A0A1Q3G192 C5J8U0 A0A182GBM5 B0W7S3

PDB

5ZAM E-value=3.44978e-80, Score=765

KEGG

100499206 K11592 endoribonuclease Dicer [EC:3.1.26.-] | (RefSeq) dcr-2; dicer-2

GO

GO:0006396 GO:0031047 GO:0003723 GO:0004525 GO:0016891 GO:0003677 GO:0005524 GO:0005515 GO:0008235 GO:0019538 GO:0030145 GO:0015923 GO:0005634 GO:0006260

Length:

1497

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15108

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00002

outside

1 - 1497

Pi

195.612334

Theta

159.379353

Tajima's D

0.807767

CLR

0.360267

CSRT

0.605619719014049

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics