Gene

KWMTBOMO06299  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001830

Annotation

hypothetical_protein_NCLIV_003870_[Neospora_caninum_Liverpool]

Location

Bomo_Chr11(+):4254802-4259473      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.21

CDS

ATGGAATACAGGCTCAGGATCTGTCAAGAGGCTTACACATCAAAGTGGTTCGTCAAGCTCTTGAGGCTATTGGGTCTGGGGCACCCAGAAGATAATATAAGAGATGTTTCCACGTATCATCTTTATACAAGGTACAAAAAGTACAATCCAACGCTTAGACAGTTGACGAGAAGTTACTTGTCACGTGGCTTGGAGGCCCCACGTACTGCTGTGAAGGATGCCACCGCTGCGATGGATTTGTATTTAAAGGTTGCTGAGTTCTGGGAGGAAGAATTACTAAATGAGACTGATAGTTCAGAGTGTGACGAAGATAGTTATTATACTGATTGA

Protein

MEYRLRICQEAYTSKWFVKLLRLLGLGHPEDNIRDVSTYHLYTRYKKYNPTLRQLTRSYLSRGLEAPRTAVKDATAAMDLYLKVAEFWEEELLNETDSSECDEDSYYTD

Uniprot

H9IX47   F0V861   A0A2W1BFQ5   A0A2A4IXJ3   A0A2H1VHV8   A0A2A9LZT0   + More
A0A074T0F1   A0A3B4BBM2   A0A151HGW7   A0A139XR42   A0A125YKV8   A0A086JAQ6   A0A125YKV9   A0A086JRR4   A0A2T6IS53   A0A086QS64   A0A086LV26   A0A2G8XUF5   A0A086PYS1   A0A0F7UUJ8   Q5MAV6   A0A086KZC4   A0A3B4BCY0   B5Y3X9   A0A2K5DJS2   A0A1W5ATI3   A0A3Q3R0K0   A0A1W5AZ04   A0A0P7V8L5   A0A1A8Q832   U5ETA9   A0A1A7XHM2   A0A2B4RTE5   A0A1A8DYK3   A0A1A8V1V4   A0A1A8BZU5   A0A1E7FHZ4   A0A1A8J6S4   A0A3B4FV17   A0A3P9C012   A0A1A8KZI9   A0A3P8QXY8   A0A1A8EXL6   A0A1A8NPR5   A0A3Q0S557   A0A0F8AIY6   A0A3Q4MX19   G7NFA2   F7IBY7   A0A2K5W0G0   A0A3P8WXT5   A0A3Q2V755   F0Y7X0   G7PR87   A0A2K5I8E8   A0A2K5DJR3   A0A2K6BU41   F6R6E7  

Pubmed

19121390    25875305    28756777    25463417    26738725    25480939    + More
16902086    18923393    25186727    25835551    22002653    25243066    24487278    21368207    17431167   

EMBL

BABH01021349    FR823381    LN714475    CBZ49902.1    CEL64489.1    KZ150077    + More
PZC73939.1    NWSH01005743    PCG63994.1    ODYU01002647    SOQ40425.1    NWUJ01000013    PFH31878.1    KL544049    KEP62378.1    AHZP02001064    KYK68612.1    AGQS02005267    KYF41247.1    AAQM03000298    EPR57911.1    AEYI02002200    KFG29224.1    KE138815    EPT32307.1    AHZU02001215    KFG34832.1    AFHV02001792    PUA88168.1    AEXC02000883    KFH15446.1    AFYV02001892    KFG60494.1    AGQR02002667    PIL98653.1    AEYJ02001004    KFH05503.1    LN714490    AAYL02000300    CEL71758.1    ESS29513.1    AY841997    AM055943    AAW28929.1    CAJ20646.1    AEYH02001544    KFG49742.1    CP001141    ACI65209.1    JARO02000428    KPP78591.1    HAEI01004621    SBR89583.1    GANO01004461    JAB55410.1    HADW01015929    HADX01001812    SBP17329.1    LSMT01000299    PFX20881.1    HAEA01010527    SBQ39007.1    HADY01007492    HAEJ01014207    SBS54664.1    HADZ01008853    SBP72794.1    KV784357    OEU17665.1    HAED01018882    HAEE01005441    SBR05327.1    HAEF01000231    SBR37613.1    HAEB01004067    HAEC01010114    SBQ50594.1    HAEH01003235    SBR70732.1    KQ042082    KKF19135.1    CM001267    EHH23704.1    GAMT01004158    GAMS01004489    GAMQ01005943    JAB07703.1    JAB18647.1    JAB35908.1    AQIA01023130    GL833127    EGB08505.1    CM001290    EHH57003.1    JSUE03013916   

Proteomes

UP000005204    UP000218220    UP000224006    UP000027470    UP000261520    UP000005641    + More
UP000001529    UP000002226    UP000000759    UP000233020    UP000192224    UP000261600    UP000034805    UP000225706    UP000261460    UP000265160    UP000265100    UP000261340    UP000261580    UP000008225    UP000233100    UP000265120    UP000264840    UP000009130    UP000233080    UP000233120    UP000006718   

PRIDE

H9IX47   

Pfam

PF00929   RNase_T        + More
PF00188   CAP
PF01390   SEA

Interpro

IPR036397   RNaseH_sf        + More
IPR034920   Rex4       
IPR013520   Exonuclease_RNaseT/DNA_pol3       
IPR012337   RNaseH-like_sf       
IPR037431   REX4_DEDDh_dom       
IPR034933   ISG20L2       
IPR037433   ISG20_DEDDh       
IPR014044   CAP_domain       
IPR000082   SEA_dom       
IPR035940   CAP_sf       
IPR016187   CTDL_fold       
IPR036364   SEA_dom_sf       
IPR016186   C-type_lectin-like/link_sf       
IPR034113   SCP_GAPR1-like       

SUPFAM

SSF53098   SSF53098        + More
SSF55797   SSF55797       
SSF82671   SSF82671       
SSF56436   SSF56436       

Gene 3D

3.30.420.10     3.10.100.10     3.30.70.960     3.40.33.10    

CDD

cd06144  REX4_like
cd06149  ISG20
cd05382  SCP_GAPR-1_like

ProteinModelPortal

H9IX47   F0V861   A0A2W1BFQ5   A0A2A4IXJ3   A0A2H1VHV8   A0A2A9LZT0   + More
A0A074T0F1   A0A3B4BBM2   A0A151HGW7   A0A139XR42   A0A125YKV8   A0A086JAQ6   A0A125YKV9   A0A086JRR4   A0A2T6IS53   A0A086QS64   A0A086LV26   A0A2G8XUF5   A0A086PYS1   A0A0F7UUJ8   Q5MAV6   A0A086KZC4   A0A3B4BCY0   B5Y3X9   A0A2K5DJS2   A0A1W5ATI3   A0A3Q3R0K0   A0A1W5AZ04   A0A0P7V8L5   A0A1A8Q832   U5ETA9   A0A1A7XHM2   A0A2B4RTE5   A0A1A8DYK3   A0A1A8V1V4   A0A1A8BZU5   A0A1E7FHZ4   A0A1A8J6S4   A0A3B4FV17   A0A3P9C012   A0A1A8KZI9   A0A3P8QXY8   A0A1A8EXL6   A0A1A8NPR5   A0A3Q0S557   A0A0F8AIY6   A0A3Q4MX19   G7NFA2   F7IBY7   A0A2K5W0G0   A0A3P8WXT5   A0A3Q2V755   F0Y7X0   G7PR87   A0A2K5I8E8   A0A2K5DJR3   A0A2K6BU41   F6R6E7  

KEGG

101746969    K18327 RNA exonuclease 4 [EC:3.1.-.-] | (RefSeq) RNA exonuclease 4-like

GO

GO:0003676   GO:0006364   GO:0008408   GO:0016021   GO:0008859   GO:0005730   GO:0000726   GO:0000738   GO:0004519   GO:0003697   GO:0045944   GO:0016607   GO:0000737   GO:0003713   GO:0000175   GO:0004527   GO:0005634   GO:0005834   GO:0007186   GO:0008270   GO:0008235   GO:0019538   GO:0030145   GO:0015923   GO:0006260  

PANTHER

PTHR12801:SF45   PTHR12801:SF78   PTHR12801:SF130  

Length:

109

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00077

Exp number, first 60 AAs:

0.00077

Total prob of N-in:

0.44280

outside

1  -  109

 

 

Pi

207.322441

Theta

168.818461

Tajima's D

0.397961

CLR

0.115475

CSRT

0.485425728713564

Interpretation

Uncertain