Gene

KWMTBOMO06298

Pre Gene Modal

BGIBMGA001829

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_RNA_exonuclease_4_[Bombyx_mori]

Location

Bomo_Chr11(+):4250542-4252563      View in EpiBrowser

Full name

Flavin-containing monooxygenase      

Location in the cell

Nuclear   Reliability : 3.538

CDS

ATGGATCACAAAGAGGAAAAACAAGCACCAAAGGAGCAGTACACAGGTAAATTCCGTAGAAACAGGAAAACTGAACAGAAAATAAACAAAAGCAAAGACTTGCAGCCAACCGTTCGGAAATTTGAAACTTTGAATTTAGAACCTGACCAGGCAGACGGACATGAAGATGATATAGCACTTAATGACAGGAAACAAGCTAAAAACAAAATAACCAAGTTCATTGCTATGGACTGCGAAATGGTAGGAATAGGTTATGATGGAAATGATCACATGTTAGCCAGAGTATCTTTAGTCAATAAATTTGGTGACTGCATATACGACAAGTTTGTGAAGCCCCGTGAAGAAGTTAAAGATTATCGTACAATAGTCAGCGGGATACGCAAAGAGGATCTAATTAATGGTGAAGATTTTTCAATTGTTCAAAAAGAAGTAGCAGACGTTATTAGAGGTAAAATATTAGTTGGACACTCATTGAAAAATGATCTAAATGTTCTGTTTTTGTCACATCCCAAACGAAATATCCGGGACACATCTAAGTACAAACCATTCAAAAAGATAACAAAAGGCAGTACTCCGTCGTTGAAACGTTTAGCTAAAGAAATACTAAGCATTGACATACAGCACGGAGAGCACAGCTCAGTAGAGGATGCCAGGGCAGCTATGCAACTTTACAGAACTGTGTCGAAGAAGTGGGAAGCCGGACTGAGCGACAGAAGAGGCTACAAAAAAATAAATGAATGA

Protein

MDHKEEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKEILSIDIQHGEHSSVEDARAAMQLYRTVSKKWEAGLSDRRGYKKINE

Cofactor

FAD

Similarity

Belongs to the FMO family.

Uniprot

H9IX46   A0A2H1VHV8   A0A2A4IXJ3   A0A2W1BFQ5   A0A194Q5V1   A0A0N0PEM7   + More
E2A9M5   E9IY43   A0A195ERU5   A0A195CZT7   F4WQT0   A0A151X3B2   A0A195EG08   A0A158NRS8   A0A195BRM3   A0A154PNR9   A0A026WFD6   A0A3L8DGK4   A0A087ZTT4   A0A0J7KQD5   A0A2A3EBW1   A0A1A8Q832   A0A232EWR7   A0A1A8NPR5   A0A1A8EXL6   A0A1A8V1V4   F6ZDT1   A0A3S2P7R6   A0A091MN49   A0A2R8QBP0   A0A2R5LKI6   A0A0P7TG99   V9KME7   A0A2P8YG85   A0A3B5K726   F6YYD7   A0A131YNA5   A0A093HAY6   W5L1G3   G3MH15   A0A1E1XF96   A0A1W4YWP2   A0A023GIS1   A0A091GMU4   H2U9P3   A0A091UQP2   A0A093R433   A0A131XJP0   A0A093Q414   A0A147B6U1  

EC Number

1.-.-.-

Pubmed

19121390    28756777    26354079    20798317    21282665    21719571    + More
21347285    24508170    30249741    28648823    12481130    15114417    23594743    24402279    29403074    21551351    18464734    26830274    25329095    22216098    28503490    28049606   

EMBL

BABH01021348    ODYU01002647    SOQ40425.1    NWSH01005743    PCG63994.1    KZ150077    + More
PZC73939.1    KQ459463    KPJ00380.1    KQ459736    KPJ20219.1    GL437918    EFN69827.1    GL766908    EFZ14469.1    KQ981993    KYN30901.1    KQ977041    KYN06131.1    GL888275    EGI63443.1    KQ982562    KYQ54927.1    KQ978983    KYN26829.1    ADTU01024289    ADTU01024290    KQ976424    KYM88591.1    KQ434977    KZC12908.1    KK107274    EZA53734.1    QOIP01000008    RLU19302.1    LBMM01004397    KMQ92464.1    KZ288291    PBC29208.1    HAEI01004621    SBR89583.1    NNAY01001829    OXU22775.1    HAEH01003235    SBR70732.1    HAEB01004067    HAEC01010114    SBQ50594.1    HADY01007492    HAEJ01014207    SBS54664.1    EAAA01001566    CM012455    RVE59553.1    KK832796    KFP77832.1    FP243383    GGLE01005863    MBY09989.1    JARO02020851    KPP56475.1    JW867150    AFO99667.1    PYGN01000618    PSN43267.1    GEDV01008120    JAP80437.1    KL205884    KFV76177.1    JO841166    AEO32783.1    GFAC01001402    JAT97786.1    GBBM01001619    JAC33799.1    KL448313    KFO82509.1    KL409973    KFQ93001.1    KL224938    KFW65784.1    GEFH01002830    JAP65751.1    KL671828    KFW83703.1    GEIB01001934    JAR86499.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000000311    UP000078541    + More
UP000078542    UP000007755    UP000075809    UP000078492    UP000005205    UP000078540    UP000076502    UP000053097    UP000279307    UP000005203    UP000036403    UP000242457    UP000215335    UP000008144    UP000000437    UP000034805    UP000245037    UP000005226    UP000002279    UP000053584    UP000018467    UP000192224    UP000053760    UP000053283    UP000054081    UP000053258   

PRIDE

H9IX46   

Pfam

PF00929   RNase_T        + More
PF00743   FMO-like

Interpro

IPR012337   RNaseH-like_sf        + More
IPR013520   Exonuclease_RNaseT/DNA_pol3       
IPR034920   Rex4       
IPR036397   RNaseH_sf       
IPR037431   REX4_DEDDh_dom       
IPR000960   Flavin_mOase       
IPR036188   FAD/NAD-bd_sf       
IPR020946   Flavin_mOase-like       

SUPFAM

SSF53098   SSF53098        + More
SSF51905   SSF51905       

Gene 3D

3.30.420.10     3.50.50.60    

CDD

cd06144  REX4_like

ProteinModelPortal

H9IX46   A0A2H1VHV8   A0A2A4IXJ3   A0A2W1BFQ5   A0A194Q5V1   A0A0N0PEM7   + More
E2A9M5   E9IY43   A0A195ERU5   A0A195CZT7   F4WQT0   A0A151X3B2   A0A195EG08   A0A158NRS8   A0A195BRM3   A0A154PNR9   A0A026WFD6   A0A3L8DGK4   A0A087ZTT4   A0A0J7KQD5   A0A2A3EBW1   A0A1A8Q832   A0A232EWR7   A0A1A8NPR5   A0A1A8EXL6   A0A1A8V1V4   F6ZDT1   A0A3S2P7R6   A0A091MN49   A0A2R8QBP0   A0A2R5LKI6   A0A0P7TG99   V9KME7   A0A2P8YG85   A0A3B5K726   F6YYD7   A0A131YNA5   A0A093HAY6   W5L1G3   G3MH15   A0A1E1XF96   A0A1W4YWP2   A0A023GIS1   A0A091GMU4   H2U9P3   A0A091UQP2   A0A093R433   A0A131XJP0   A0A093Q414   A0A147B6U1  

PDB

1WLJ     E-value=8.08564e-25,     Score=279

KEGG

101746604    K18327 RNA exonuclease 4 [EC:3.1.-.-] | (RefSeq) RNA exonuclease 4

GO

GO:0003676   GO:0008408   GO:0006364   GO:0016021   GO:0004499   GO:0050660   GO:0050661   GO:0005634   GO:0004527   GO:0045944   GO:0000737   GO:0000726   GO:0000738   GO:0005730   GO:0004519   GO:0003697   GO:0016607   GO:0003713   GO:0005834   GO:0007186   GO:0008270   GO:0008235   GO:0019538   GO:0030145   GO:0015923   GO:0006260  

PANTHER

PTHR12801:SF45   PTHR12801:SF130  

Length:

246

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00206

Exp number, first 60 AAs:

0

Total prob of N-in:

0.13751

outside

1  -  246

 

 

Pi

191.415538

Theta

142.439313

Tajima's D

1.029624

CLR

0

CSRT

0.661816909154542

Interpretation

Uncertain