SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06291  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001828
Annotation
PREDICTED:_uncharacterized_protein_LOC106133714_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.845
 

Sequence

CDS
ATGGCCGAGAACGTTGAGGACATCACAAAGAACATATCTGAGCTAACCGTGCTATCGTTTCGGAAGCTTGATGACGTCAAAAAGCTGGCAAAACACTTTACTAAGATCATCAATCATCCTATAACAGAACAAAGTCCAAGCATTCAACGTTACCTAAAGAACTTACAGGAAACGCACAAGAGGATAATTTTCCAAAAACGCGACAGCGTCGAAGTTGAATACATTTTTACGACTGAGAAGAAAAGTAGCCTGCAACGGCAGAGGTTTAACAGTCTACCGGTGAGCGAAGTTCCCGAATTGCTGAAAAACGAATTCATAGCTGTCGAAAACGCGAGACAAGTTCACATATGCACAGACTGTGACGTCGAGATAGAGTTAAACGATGAAGAGCCACTCATGGAATCTTTGCAGAAGCACTTCAATCTTGAAGTGCATCTTCCGAAGTTGAAACGGGAAAGCATCGATGTCGCTGAACCTGTAATACTGCCAAATATGTCGAGAAGACTGTCGGCGCTGGAATGTGGAGAAATGCCAGTATTAAGTCTAGAACAACTAAGACTCCGGAATCCCGTGGAAAAGTTGGATCGTAATCTCTGCAGCAAATTAACTAACATGCTGCTAAAAGTGCTGCCGGATACCTCGGAAGCAAGCATCGCCGAAGCACTGAAGATTTACCAGGAAACATACGACAAGCTATGCCAGGACGTCTCGAATATAGATTTTACAAATCAAACCAGCTCCGTAGCTCCCATCATAATGAGTATTCGTGACAACGTCTATCAGAATTTTTCGGCCGATGCAAACAAAAACACAGACAACGATGAAAATGAGCAATCGCCAGAGAAACCTAAAGCTCAGACAAAGAAATACAGGTATTACGGACCGATCGAAGCTTCTATTGTGAAATTACTGTTGAATCACAAATTAGTGTCGTTGGTTGATGACCGCACCGGGAAGCTAGCATTCTTCTGCATCGCCTGCGAGTACTACACGCTCAGATTCCACTACGATAGCGTTCTCAGTCACGTGTTCAGCGAAACTCACGTCCACAACCTGTCCTGTATTATGCAATCCGACAAGCACATCCCGTTTTTAATGAGCGAAACCACAATTGAGAGCATCAAAGAAATGAACGCGAAATTCCTTTCCGGTCATAACATCACAGCCACCGCATCCGGACTTAACTGCCGGCTCTGCAAACAAAACATAGAGACCGCCGAAGCGACCATACTCCACTTATTAGACGAGAAACACTTAGCCATGCTCTCAGACGATTTGTACTTAAAAATGAAAGCGACGAGCCCGAACGGGCAAATTCCTGAAGAATGGGGACCAAAGGACTTGAGCTGGTCCAAGTATTTGGCCAGCGTGGGCAAACCGGTTAACAACCGCGACCACGTTATCATAGAGAACTTTATTAAACCTTCCGGGAAAGTAGGCAATTTCTGCACCTGCTGCGATATGACGCTGAAAGGGCCCCGACAGGTCCTGTTCAACCATATCCGTCAGAAGAAGCACCTTCGTAACGCGGCACCAAAGAAGCTCGCCCTCCTCTACAAAAACTACTGCCGCCCCTCCGAGTACTACGCGTCGTTCGGTAACTTTTACATTTGTTCGATTTGCCCCGAATACGTGGCGGTGCCTTCGTTCGCGAACATCGTCGAACATTTCGAAAGCAACGAACACATGGAGACCGTAGCCAAACTTCTCCGTCTGGCCGTGAACAACGAAGTCGACAAACAATTTGCGGCACTGAATAAAATCGAAGATCTGAAATGCGTTTATTGCAACTTCGATTTTCGGGATAACCGTGAGGCCGTCAAACATGCGCTTTCTAATGTGTACCACCAGAGCGCCGTCGCGGAGACGAAGCTGAACGCGAACAGAGCGGATATCATAAGCGTTTACATGAAGGGAAATTACATCTTGCACAGCGAAGGAGCGTCCTTTACGTGCGTCAATTGCAATGGCGTATTCAATTCGATTCGGTCGCTTTTGATGCATTTAGTGCACGCCGAGCACTTTGCTTACAGACCGCCGGCGGAGTGCACCTTCCGTTATTATCTCGAATTAAAACACAACATTAACATGCTGGCGAAAAACAAATACGTTTATTACTCGTTTGGGAGGTTCAAATGTGGCGTTTGCGACGCGGACATCGAGGAGGGTGAGAACGCGAAACGACATGTCCTATCGCCGAAGCATAGAGAGAATATGGGTGCCACATACATCAATGAGGACGCGTCTGCCGTCGAGTAA
Protein
MAENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFNSLPVSEVPELLKNEFIAVENARQVHICTDCDVEIELNDEEPLMESLQKHFNLEVHLPKLKRESIDVAEPVILPNMSRRLSALECGEMPVLSLEQLRLRNPVEKLDRNLCSKLTNMLLKVLPDTSEASIAEALKIYQETYDKLCQDVSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANKNTDNDENEQSPEKPKAQTKKYRYYGPIEASIVKLLLNHKLVSLVDDRTGKLAFFCIACEYYTLRFHYDSVLSHVFSETHVHNLSCIMQSDKHIPFLMSETTIESIKEMNAKFLSGHNITATASGLNCRLCKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNGQIPEEWGPKDLSWSKYLASVGKPVNNRDHVIIENFIKPSGKVGNFCTCCDMTLKGPRQVLFNHIRQKKHLRNAAPKKLALLYKNYCRPSEYYASFGNFYICSICPEYVAVPSFANIVEHFESNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGNYILHSEGASFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNINMLAKNKYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKHRENMGATYINEDASAVE

Summary

Interpro
IPR013087   Znf_C2H2_type        + More
IPR003604   Matrin/U1-like-C_Znf_C2H2       

Ontologies

Topology

Length:
752
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01155
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00043
outside
1  -  752
 
 

Population Genetic Test Statistics

Pi
245.574076
Theta
215.923702
Tajima's D
0.785202
CLR
0.307082
CSRT
0.600669966501675
Interpretation
Uncertain
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