Gene

KWMTBOMO06287  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001825

Annotation

hypothetical_protein_KGM_17625_[Danaus_plexippus]

Location

Bomo_Chr11(+):4015221-4015783      View in EpiBrowser

Full name

U6 snRNA-associated Sm-like protein LSm4      

Location in the cell

Nuclear   Reliability : 2.812

CDS

ATGTTGCCGCTATCTTTGTTACGGACAGCGCAGAACCACCCTATGCTTGTCGAATTGAAAAATGGCGAAACTTACAATGGTCATCTCGTAAGCTGCGATAATTGGATGAACATTAATTTACGTGAAGTTATTTGCACGTCGAGAGACGGCGACAAGTTCTGGAGGATGCCGGAATGTTATATACGTGGTAGTACGATCAAATACTTGAGAATACCGGACGAGGTCATCGACATGGTGAAGGAGGAGACACAGGTTAAAGCGCGCGGTCGTAACGAGGTTTCCAAGGGACGCGGGCAAAACATGAGGACCGGTGGCCGTGGTGGTAGCCGAGGCGCATTCGGTAACCGCGGCAGAGCACCTCCACTAGCCCGTGGCGGCGGGAACCCGCGACCACAGAACAAAAATAAAAATAAAATGTAA

Protein

MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQNMRTGGRGGSRGAFGNRGRAPPLARGGGNPRPQNKNKNKM

Description

Binds specifically to the 3'-terminal U-tract of U6 snRNA.

Subunit

LSm subunits form a heteromer with a doughnut shape.

Similarity

Belongs to the snRNP Sm proteins family.

Uniprot

H9IX42   A0A0L7KXG8   A0A0N0PCU4   A0A0N1I660   A0A159YQW1   A0A212F4D6   + More
A0A2W1BLQ2   A0A2H1VH70   A0A2A4JXH5   A0A2H1V498   S4P0I6   A0A0T6AU85   A0A1B0C247   A0A1A9XTX9   A0A1B0GBA5   A0A1A9ZXF9   A0A1A9UNQ0   A0A1A9W0P0   D6WJA0   Q8IGS9   Q9VKW8   A0A0Q9WXR0   B4NZN5   B4Q990   A0A2M4AX94   B3N9N9   A0A3B3VP51   A0A1W4UFB1   J3JYX7   B4JQ00   A0A0Q9X649   H3CXV5   A0A0M4E1K7   B4LVC1   N6U2Y0   A0A3Q3DA29   B3MJG8   A0A3B3YT18   A0A3Q3LH61   W5M1T9   A0A146NXC0   A0A3Q2VHI0   A0A3Q2CSY0   A0A2K6FQA5   Q6P6E4   W5UFL1   B5DKQ4   B4G7B3   B5XCV6   A0A3B1K237   B5XA57   A0A1W4ZCA5   A0A315VCP2   A0A3B3BBW6   A0A3B4GLI0   A0A3P9CJ87   I3K4G9   A0A3P8QWP7  

Pubmed

19121390    26227816    26354079    22118469    28756777    23622113    + More
18362917    19820115    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17994087    17550304    22936249    22516182    15496914    23537049    23594743    23127152    15632085    20433749    25329095    29703783    29451363    25186727   

EMBL

BABH01021319    JTDY01004804    KOB67729.1    KQ460555    KPJ14022.1    KQ458486    + More
KPJ05871.1    KT984955    AMY63174.1    AGBW02010378    OWR48608.1    KZ150084    PZC73786.1    ODYU01002359    SOQ39752.1    NWSH01000480    PCG76092.1    ODYU01000394    SOQ35104.1    GAIX01012925    JAA79635.1    LJIG01022803    KRT78634.1    JXJN01024340    CCAG010011567    KQ971343    EFA04447.2    BT001620    AAN71375.1    AE014134    BT044323    AAF52938.3    ACH92388.1    ADV37028.1    CH963857    KRF98366.1    CM000157    EDW88819.2    CM000361    CM002910    EDX04532.1    KMY89528.1    GGFK01012096    MBW45417.1    CH954177    EDV58534.1    BT128458    AEE63415.1    CH916372    EDV98980.1    CH933807    KRG03711.1    CP012523    ALC39278.1    CH940649    EDW63300.2    APGK01051932    APGK01051933    APGK01051934    APGK01051935    KB741207    ENN72927.1    CH902620    EDV32336.2    AHAT01011227    GCES01149959    JAQ36363.1    BX936438    BC059435    BC062285    AAH59435.1    AAH62285.1    JT408875    AHH38477.1    CH379063    EDY72104.2    CH479180    EDW28367.1    BT048875    ACI68676.1    BT047926    ACI67727.1    NHOQ01001911    PWA21180.1    AERX01021058   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000007151    UP000218220    + More
UP000092460    UP000092443    UP000092444    UP000092445    UP000078200    UP000091820    UP000007266    UP000000803    UP000007798    UP000002282    UP000000304    UP000008711    UP000261500    UP000192221    UP000001070    UP000009192    UP000007303    UP000092553    UP000008792    UP000019118    UP000264820    UP000007801    UP000261480    UP000261640    UP000018468    UP000264840    UP000265020    UP000233160    UP000000437    UP000221080    UP000001819    UP000008744    UP000087266    UP000018467    UP000192224    UP000261560    UP000261460    UP000265160    UP000005207    UP000265100   

PRIDE

H9IX42    Q8IGS9    Q9VKW8    I3K4G9   

Pfam

PF01423   LSM

Interpro

IPR001163   LSM_dom_euk/arc        + More
IPR034101   Lsm4       
IPR027141   LSm4/Sm_D1/D3       
IPR010920   LSM_dom_sf       

SUPFAM

SSF50182   SSF50182       

CDD

cd01723  LSm4

ProteinModelPortal

H9IX42   A0A0L7KXG8   A0A0N0PCU4   A0A0N1I660   A0A159YQW1   A0A212F4D6   + More
A0A2W1BLQ2   A0A2H1VH70   A0A2A4JXH5   A0A2H1V498   S4P0I6   A0A0T6AU85   A0A1B0C247   A0A1A9XTX9   A0A1B0GBA5   A0A1A9ZXF9   A0A1A9UNQ0   A0A1A9W0P0   D6WJA0   Q8IGS9   Q9VKW8   A0A0Q9WXR0   B4NZN5   B4Q990   A0A2M4AX94   B3N9N9   A0A3B3VP51   A0A1W4UFB1   J3JYX7   B4JQ00   A0A0Q9X649   H3CXV5   A0A0M4E1K7   B4LVC1   N6U2Y0   A0A3Q3DA29   B3MJG8   A0A3B3YT18   A0A3Q3LH61   W5M1T9   A0A146NXC0   A0A3Q2VHI0   A0A3Q2CSY0   A0A2K6FQA5   Q6P6E4   W5UFL1   B5DKQ4   B4G7B3   B5XCV6   A0A3B1K237   B5XA57   A0A1W4ZCA5   A0A315VCP2   A0A3B3BBW6   A0A3B4GLI0   A0A3P9CJ87   I3K4G9   A0A3P8QWP7  

PDB

6QX9     E-value=2.45792e-43,     Score=435

KEGG

101745795    K12623 U6 snRNA-associated Sm-like protein LSm4 | (RefSeq) U6 snRNA-associated Sm-like protein LSm4

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)
03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0000398   GO:0005681   GO:0003723   GO:0000956   GO:0017070   GO:0000932   GO:0005688   GO:0000387   GO:0033962   GO:0046540   GO:0006397   GO:0008380   GO:0005829   GO:0120115   GO:0016020   GO:0071005   GO:0042731  

PANTHER

PTHR23338  

Subcellular location

Nucleus  

Length:

139

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07637

outside

1  -  139

 

 

Pi

165.980466

Theta

201.602317

Tajima's D

-0.387534

CLR

0

CSRT

0.269186540672966

Interpretation

Uncertain