Gene

KWMTBOMO06283

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr11(+):3844236-3845740      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.432

CDS

ATGACAAGGCAGAGCTGCTGGCCGATCACCAGTACTCAATATGCGGACCCCGAACACACCCAGTTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGTCGCCCTCGGACGCGTTACCCCCCATTACCACTTCCAAGGTTACTAAGGAGGCGATTGCTAACCTGCAACCACGGAAAGCTCCCGGCTCCGACGGCATCCGCAATAGCGCGCTAAAAATGTTACCAGCCCAACTAATAACAAAGTTGGCCACCATTTTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCTGACGGTATCGGAATACACAAGCCGGGCAAACCGAAGAACCAAACCGCGAGTTACCGCCCCATCAGCCTCCTCCCGGCGATAACCAAACTATACCAACGACTCCTTCGTAAACGCCTCTGGGACTTCATCGCGTCCAACAAAATATTGATCGACGAGCAGTTTGGATTCCGCGCCAAACACTCGTGCGTCCATCAAGTGCACCACCTCACGGAGCACATCTTACTAGGGCTGAATAGGCGGAAACCCATCCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGACAAAGCCTGGCACAGCGGTTTGATATACAAACTGTATAACATGGGAGTGCCAGATAGACTCGTGTTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGCTCTCGCCCCCATCACATAGCAGCCGGAGTCCCGCAAGGCTCCGCTCTCTCCCCGTTACTGTTCAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACGGCTATCTACTACTCATGTAGGAAGAAGTCGTTGTTACATCGGCGACTCCAGACCGTAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAGAAGCACAGCGGTGCTCTTCAAAAAGGGTCGCCCTGCGAGCACCACATTGAGCATCCCACTCCCGACTAGGCGCGTCAACACCTCCGCCTCCGCCATTTGCCTAATCATCATGTACGACCAACCCATACCGTGGGCCCCGAAGGTCAAATACTTAAGCGTCACCCTCGACAGAGGGATGACATTCCGCCCCCACATAAAGACGGTACGCGACCGCGCCGCCTTCATACTAGGACGCCTTTACTCGATGATATGCAGGCGAAGTAAATTATCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGATCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCACTCACTTAAAATCATTCCTAGTTATTGAATCCCGTTTTTGCAGGATAGCCGTCGAAGCTCCGTGGTTCGCATAG

Protein

MTRQSCWPITSTQYADPEHTQLVDREVERRASLSPSDALPPITTSKVTKEAIANLQPRKAPGSDGIRNSALKMLPAQLITKLATILNAAMTNCIFPAAWKEADGIGIHKPGKPKNQTASYRPISLLPAITKLYQRLLRKRLWDFIASNKILIDEQFGFRAKHSCVHQVHHLTEHILLGLNRRKPIPTGALFFDIAKAFDKAWHSGLIYKLYNMGVPDRLVFIIRDYLSNRSFRYRVEGTRSRPHHIAAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKSLLHRRLQTVATTMGQWFRKWRIDINPTRSTAVLFKKGRPASTTLSIPLPTRRVNTSASAICLIIMYDQPIPWAPKVKYLSVTLDRGMTFRPHIKTVRDRAAFILGRLYSMICRRSKLSLRNKVTLYKTCIRPVMIYASVVFAHAARTHLKSFLVIESRFCRIAVEAPWFA

Uniprot

Q9XXW0   Q9BPQ0   Q93137   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
O96546   O96544   A0A139W8G9   A0A1Y1NA23   A0A139WA11   A0A2S2PR14   V5GNF3   X1WMU5   J9KKL3   X1WWC4   A0A023EZE6   A0A087U2S8   X1WXU3   A0A224XF24   V5GNJ2   J9KC83   A0A2S2PPK8   X1WLB2   A0A1Y1M7E9   A0A087V0P8   A0A3N5Z7I3   Q07995   A0A2S2PH29   A0A2J7R7D0   A0A182GA28   A0A2J7RB54   A0A2S2Q823   A0A182GMD9   A0A2J7RS77   A0A2J7RPU2   A0A2J7Q059   A0A2J7R4B7   A0A2J7RIW7   A0A2J7RM10   A0A2J7Q4F7   A0A2J7PMP6   A0A2J7QUJ9   A0A2S2RAN7   A0A2S2NGV8   A0A2S2QJM7   A0A2J7PMP9   A0A2J7R2E1   A0A2J7R6U1   A0A2J7Q0Q6   A0A2J7QFL0   A0A2J7RKP3   A0A2J7Q5G9   A0A2J7QEZ4   J9M522   A0A2S2PX53   A0A2M4BEF4   A0A2J7PBY3   J9LC21   A0A2M4BEZ9   A0A2J7QY69   A0A2J7QR37   A0A2J7PDS9   O76197   A0A023EYS8   A0A2M4BDA5   A0A2J7Q1Y9   A0A2M4BD66   A0A2M4BD62   A0A2J7Q2R1   A0A2J7Q6J2   A0A2S2Q383   A0A087TMJ9   A0A2M4BD67   A0A2S2NJB5   X1WN18   A0A2J7R8R8   A0A0C9RJA4   A0A2M4BDV6   A0A087U3E2   A0A2J7PU96   A0A2S2N814   A0A2J7QB68   A0A2S2QTZ8   X1WZH0   A0A2J7PVX3   A0A1Y1LKN6   Q8T9X4   A0A2J7PDM0   A0A182GB02   A0A2H8TWD9   A0A023F6S4   A0A0J7KBP6   A0A0A9YJ00   Q8I7P8   A0A0A9YU04   A0A0A9YSX4   A0A087T1W0   A0A087UGF5  

Pubmed

10333566    23652563    26354079    10380107    18362917    19820115    + More
28004739    25474469    30086797    8387152    26483478    8934517    25401762   

EMBL

AB018558    BAA76304.1    AB055391    BAB21761.1    U07847    AAA17752.1    + More
KC165845    AFY12622.1    KQ459265    KPJ02064.1    KQ459259    KPJ02068.1    AF081103    AAC72921.1    AF081101    AAC72919.1    KQ973342    KXZ75569.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    GGMR01019198    MBY31817.1    GALX01005359    JAB63107.1    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    GBBI01004571    JAC14141.1    KK117880    KFM71667.1    ABLF02008933    GFTR01008038    JAW08388.1    GALX01005299    JAB63167.1    ABLF02033757    GGMR01018716    MBY31335.1    ABLF02042518    ABLF02057746    GEZM01038405    JAV81653.1    KL813758    KFM83187.1    RPOV01000134    RPJ78669.1    S59870    AAB26437.2    GGMR01016114    MBY28733.1    NEVH01006736    PNF36716.1    JXUM01155316    KQ572171    KXJ68070.1    NEVH01005938    PNF38077.1    GGMS01004685    MBY73888.1    JXUM01014072    KQ560393    KXJ82651.1    NEVH01000280    PNF43672.1    NEVH01001355    PNF42855.1    NEVH01020071    PNF21969.1    NEVH01007443    PNF35684.1    NEVH01003017    PNF40781.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01018383    PNF23463.1    NEVH01023962    PNF17612.1    NEVH01010546    PNF32261.1    GGMS01017914    MBY87117.1    GGMR01003407    MBY16026.1    GGMS01008766    MBY77969.1    NEVH01023961    PNF17613.1    NEVH01007838    PNF34986.1    NEVH01006754    PNF36554.1    NEVH01019964    PNF22161.1    NEVH01014858    PNF27387.1    NEVH01002716    PNF41415.1    NEVH01017559    PNF23833.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    ABLF02024246    GGMS01000737    MBY69940.1    GGFJ01002256    MBW51397.1    NEVH01027074    PNF13841.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGFJ01002257    MBW51398.1    NEVH01009134    PNF33528.1    NEVH01011985    PNF31054.1    NEVH01026154    PNF14491.1    AF012049    AAC24972.1    GBBI01004395    JAC14317.1    GGFJ01001842    MBW50983.1    NEVH01019376    PNF22596.1    GGFJ01001844    MBW50985.1    GGFJ01001843    MBW50984.1    NEVH01019080    PNF22876.1    NEVH01017470    PNF24199.1    GGMS01002992    MBY72195.1    KK115908    KFM66338.1    GGFJ01001858    MBW50999.1    GGMR01004661    MBY17280.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01006721    PNF37225.1    GBYB01008290    JAG78057.1    GGFJ01001857    MBW50998.1    KK117974    KFM71881.1    NEVH01021205    PNF19912.1    GGMR01000676    MBY13295.1    NEVH01016302    PNF25823.1    GGMS01012005    MBY81208.1    ABLF02034467    NEVH01020940    PNF20481.1    GEZM01053022    JAV74219.1    AF456125    AAL57609.1    NEVH01026386    PNF14434.1    JXUM01241784    KQ635293    KXJ62492.1    GFXV01006424    MBW18229.1    GBBI01001646    JAC17066.1    LBMM01010106    KMQ87671.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    AY180919    AAN87272.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GBHO01008295    JAG35309.1    KK113014    KFM59099.1    KK119692    KFM76444.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000069940    + More
UP000249989    UP000036403   

PRIDE

Q9XXW0    Q9BPQ0    Q93137    K9N5J5    Q8T9X4    Q8I7P8    + More

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q9BPQ0   Q93137   K9N5J5   A0A0N1PFV1   A0A0N0PA09   + More
O96546   O96544   A0A139W8G9   A0A1Y1NA23   A0A139WA11   A0A2S2PR14   V5GNF3   X1WMU5   J9KKL3   X1WWC4   A0A023EZE6   A0A087U2S8   X1WXU3   A0A224XF24   V5GNJ2   J9KC83   A0A2S2PPK8   X1WLB2   A0A1Y1M7E9   A0A087V0P8   A0A3N5Z7I3   Q07995   A0A2S2PH29   A0A2J7R7D0   A0A182GA28   A0A2J7RB54   A0A2S2Q823   A0A182GMD9   A0A2J7RS77   A0A2J7RPU2   A0A2J7Q059   A0A2J7R4B7   A0A2J7RIW7   A0A2J7RM10   A0A2J7Q4F7   A0A2J7PMP6   A0A2J7QUJ9   A0A2S2RAN7   A0A2S2NGV8   A0A2S2QJM7   A0A2J7PMP9   A0A2J7R2E1   A0A2J7R6U1   A0A2J7Q0Q6   A0A2J7QFL0   A0A2J7RKP3   A0A2J7Q5G9   A0A2J7QEZ4   J9M522   A0A2S2PX53   A0A2M4BEF4   A0A2J7PBY3   J9LC21   A0A2M4BEZ9   A0A2J7QY69   A0A2J7QR37   A0A2J7PDS9   O76197   A0A023EYS8   A0A2M4BDA5   A0A2J7Q1Y9   A0A2M4BD66   A0A2M4BD62   A0A2J7Q2R1   A0A2J7Q6J2   A0A2S2Q383   A0A087TMJ9   A0A2M4BD67   A0A2S2NJB5   X1WN18   A0A2J7R8R8   A0A0C9RJA4   A0A2M4BDV6   A0A087U3E2   A0A2J7PU96   A0A2S2N814   A0A2J7QB68   A0A2S2QTZ8   X1WZH0   A0A2J7PVX3   A0A1Y1LKN6   Q8T9X4   A0A2J7PDM0   A0A182GB02   A0A2H8TWD9   A0A023F6S4   A0A0J7KBP6   A0A0A9YJ00   Q8I7P8   A0A0A9YU04   A0A0A9YSX4   A0A087T1W0   A0A087UGF5  

PDB

6AR3     E-value=0.00212543,     Score=98

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676   GO:0016021  

Length:

463

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.53055

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06564

outside

1  -  463

 

 

Pi

15.845984

Theta

5.540379

Tajima's D

2.620375

CLR

0.410364

CSRT

0.96175191240438

Interpretation

Possibly Balancing Selection