Gene

KWMTBOMO06281

Pre Gene Modal

BGIBMGA001619

Annotation

PREDICTED:_nucleolysin_TIA-1_isoform_p40_[Bombyx_mori]

Location

Bomo_Chr11(-):3789557-3811355      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.773 Nuclear   Reliability : 1.345

CDS

ATGAACGGGCAGTGGCTCGGCTCCAGGTCCATCCGCACCAACTGGGCCACAAGAAAACCACCGGCTCCGAAGAATGAACTGAACTCCAAGCCTCTGACTTTCGACGAGGTCTACAATCAGAGCTCCGCCAGCAATTGCACGGTGTACTGTGGAGGTCTGACCACCGGCCTCACCGAAGAACTCATGCAGAAGACCTTCCAGCCATTCGGAACTATTCAGGAGATCAGAGTCTTCAAGGACAAAGGATATGCTTTCATCAGATTCTCGACAAAGGAAAGTGCCACCCACGCAATCGTTGCTGTCCACAACACGGATATCAACGGTCAACCAGTCAAATGCTCTTGGGGCAAGGAGTCTGGTGACCCTAACAACTCGCAGGCTCAAGGACAGCTGGGCGGCACAGCTTACAGTCCGTTTGGGACAGCTTACACCGCTAGCGGGGTGCCCCCTGCTTCATACTGGTACAACACGTACCCTCAGCAGATCGGTGGCTTCCTGCAGGGCGTCCAAGGCGTGCAGGGGTACACTTACGCTGGACAGTTTGGATATCAACAGCAGTACATGGGGTGA

Protein

MNGQWLGSRSIRTNWATRKPPAPKNELNSKPLTFDEVYNQSSASNCTVYCGGLTTGLTEELMQKTFQPFGTIQEIRVFKDKGYAFIRFSTKESATHAIVAVHNTDINGQPVKCSWGKESGDPNNSQAQGQLGGTAYSPFGTAYTASGVPPASYWYNTYPQQIGGFLQGVQGVQGYTYAGQFGYQQQYMG

Uniprot

H9IWI7   A0A194Q5W6   A0A0N0PEN8   A0A2A4JRJ0   A0A2W1BPB5   A0A2H1VJX4   + More
A0A1B6E4A1   A0A067RIJ2   A0A0A9XME9   A0A232FLG1   A0A087ZTY2   A0A023F4M2   A0A154PLH0   A0A3L8DYK6   A0A151WKF0   A0A0M9A301   A0A1Y1L3L3   K7IUA4   A0A158NYN1   A0A195CE14   A0A212F5Q8   A0A195BRI5   A0A2S2QGR1   A0A2H8TL97   A0A195DDD4   A0A2S2N8S4   N6UHC7   J9JRG5   U4TUK0   A0A2S2QKD0   A0A139WP22   A0A1B0CI93   A0A3R7M7K7   A0A182JHS4   A0A2P2IF94   Q16WX1   A0A182WK46   A0A182N242   A0A182ICX8   A0A182PQ65   A0A084VXL5   A0A182RQD3   Q7PSZ0   W8C6W1   A0A1S4FL99   A0A182YP10   A0A182WRZ2   W5JHL8   B4IGZ6   A4IJ77   A0A1W4U548   B4JTL1   A0A3B0KCL0   B4QY71   B4K8Q2   B4LYK5   A0A0M4EW15   B4G5U4   B3M0H7   E1JJ00   B3P5U2   A0A126GV08   B4PR64   A0A2R5LKK2   B4NFH7   A0A0Q9X775   A0A1I8NXU1   A0A0H4Y1N6   A8JPX0   A0A131XWL8   A0A3B0K8M2   A0A3B0JM18   B4G6C3   A0A1J1I5A0   B5DWJ8   A0A1I8MKD9   A0A3B0K0P7   A0A0R3NG74   A0A023FLE7  

Pubmed

19121390    26354079    28756777    24845553    25401762    28648823    + More
25474469    30249741    28004739    20075255    21347285    22118469    23537049    18362917    19820115    17510324    24438588    12364791    24495485    25244985    20920257    23761445    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    25315136   

EMBL

BABH01021300    BABH01021301    BABH01021302    KQ459463    KPJ00400.1    KQ459891    + More
KPJ19547.1    NWSH01000758    PCG74386.1    KZ150008    PZC75147.1    ODYU01002975    SOQ41149.1    GEDC01004546    JAS32752.1    KK852661    KDR19108.1    GBHO01023616    JAG19988.1    NNAY01000054    OXU31492.1    GBBI01002420    JAC16292.1    KQ434968    KZC12706.1    QOIP01000002    RLU25372.1    KQ983012    KYQ48290.1    KQ435752    KOX76177.1    GEZM01067848    GEZM01067847    JAV67381.1    AAZX01002623    AAZX01002629    AAZX01004673    AAZX01006610    AAZX01006771    AAZX01012594    AAZX01013265    AAZX01015850    AAZX01018968    AAZX01021525    ADTU01000687    ADTU01000688    ADTU01000689    ADTU01000690    ADTU01000691    ADTU01000692    ADTU01000693    ADTU01000694    ADTU01000695    ADTU01000696    KQ977876    KYM99052.1    AGBW02010146    OWR49072.1    KQ976423    KYM88829.1    GGMS01007159    MBY76362.1    GFXV01003109    MBW14914.1    KQ980979    KYN10837.1    GGMR01000936    MBY13555.1    APGK01020359    KB740193    ENN81120.1    ABLF02040599    ABLF02040601    ABLF02040605    ABLF02040618    ABLF02040619    ABLF02040620    ABLF02040622    KB631669    ERL85234.1    GGMS01008994    MBY78197.1    KQ971307    KYB29607.1    AJWK01013111    QCYY01001922    ROT74223.1    IACF01007047    LAB72630.1    CH477552    EAT39097.1    APCN01006061    APCN01006062    ATLV01018097    KE525212    KFB42709.1    AAAB01008810    EAA04819.5    GAMC01008316    JAB98239.1    ADMH02001370    ETN62803.1    CH480837    EDW49114.1    BT030435    ABO52855.1    CH916374    EDV91440.1    OUUW01000005    SPP81368.1    CM000364    EDX14719.1    CH933806    EDW15471.2    CH940650    EDW68025.2    CP012526    ALC47642.1    CH479179    EDW23938.1    CH902617    EDV44224.2    AE014297    ACZ95049.2    ACZ95050.2    CH954182    EDV53342.1    ALI30647.1    CM000160    EDW98428.2    GGLE01005916    MBY10042.1    CH964251    EDW83044.2    KRG01578.1    BT150486    AKR06214.1    ABW08789.2    GEFM01004347    JAP71449.1    SPP81371.1    SPP81372.1    EDW23943.1    CVRI01000040    CRK94764.1    CM000070    EDY67785.2    SPP81370.1    KRS99994.1    GBBK01002994    JAC21488.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000027135    UP000215335    + More
UP000005203    UP000076502    UP000279307    UP000075809    UP000053105    UP000002358    UP000005205    UP000078542    UP000007151    UP000078540    UP000078492    UP000019118    UP000007819    UP000030742    UP000007266    UP000092461    UP000283509    UP000075880    UP000008820    UP000075920    UP000075884    UP000075840    UP000075885    UP000030765    UP000075900    UP000007062    UP000076408    UP000076407    UP000000673    UP000001292    UP000192221    UP000001070    UP000268350    UP000000304    UP000009192    UP000008792    UP000092553    UP000008744    UP000007801    UP000000803    UP000008711    UP000002282    UP000007798    UP000095300    UP000183832    UP000001819    UP000095301   

PRIDE

H9IWI7   

Pfam

PF00076   RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       
IPR003954   RRM_dom_euk       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

H9IWI7   A0A194Q5W6   A0A0N0PEN8   A0A2A4JRJ0   A0A2W1BPB5   A0A2H1VJX4   + More
A0A1B6E4A1   A0A067RIJ2   A0A0A9XME9   A0A232FLG1   A0A087ZTY2   A0A023F4M2   A0A154PLH0   A0A3L8DYK6   A0A151WKF0   A0A0M9A301   A0A1Y1L3L3   K7IUA4   A0A158NYN1   A0A195CE14   A0A212F5Q8   A0A195BRI5   A0A2S2QGR1   A0A2H8TL97   A0A195DDD4   A0A2S2N8S4   N6UHC7   J9JRG5   U4TUK0   A0A2S2QKD0   A0A139WP22   A0A1B0CI93   A0A3R7M7K7   A0A182JHS4   A0A2P2IF94   Q16WX1   A0A182WK46   A0A182N242   A0A182ICX8   A0A182PQ65   A0A084VXL5   A0A182RQD3   Q7PSZ0   W8C6W1   A0A1S4FL99   A0A182YP10   A0A182WRZ2   W5JHL8   B4IGZ6   A4IJ77   A0A1W4U548   B4JTL1   A0A3B0KCL0   B4QY71   B4K8Q2   B4LYK5   A0A0M4EW15   B4G5U4   B3M0H7   E1JJ00   B3P5U2   A0A126GV08   B4PR64   A0A2R5LKK2   B4NFH7   A0A0Q9X775   A0A1I8NXU1   A0A0H4Y1N6   A8JPX0   A0A131XWL8   A0A3B0K8M2   A0A3B0JM18   B4G6C3   A0A1J1I5A0   B5DWJ8   A0A1I8MKD9   A0A3B0K0P7   A0A0R3NG74   A0A023FLE7  

PDB

2MJN     E-value=1.73657e-42,     Score=430

KEGG

101747198    K13201 nucleolysin TIA-1/TIAR | (RefSeq) nucleolysin TIA-1 isoform p40

GO

GO:0003723   GO:0016021   GO:0005634   GO:1990904   GO:0003729   GO:0003676   GO:0000166   GO:0016787   GO:0008235   GO:0019538   GO:0030145   GO:0015923   GO:0006260  

Length:

189

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08405

Exp number, first 60 AAs:

0.00289

Total prob of N-in:

0.10280

outside

1  -  189

 

 

Pi

169.224942

Theta

163.187094

Tajima's D

0.768672

CLR

0.460528

CSRT

0.60121993900305

Interpretation

Uncertain