Silkworm Genome Informatics Database

Gene

KWMTBOMO06269

Pre Gene Modal

BGIBMGA001624

Annotation

PREDICTED:_zinc_finger_protein_600-like_[Amyelois_transitella]

Location

Bomo_Chr11(-):3587606-3590615 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.253

CDS

ATGGGAGGTGATGCAAATTTCGAGACCGTCTTGAACATCGACAATGATCTACAGTACGATGCTGAAGTCGATGTAATATGTTCAATATGCAACGCGGAGTTTCTCGATCCCGGAGATCTGAAACAACACCTAAAAGTTCACAGCACGGTATCGACCGACACGGAGCGGCGGAAGACGTGCGACTTCTGCGAATGCAAATACGCCGACGTCGAGGAATACGCTTACCACATACGCGACTCGCATCTCGCCGCCTCGAAGTTTTGCCAGCTTTGTTCGCGTGTGTTTATCGATTTCAACAAATACAAACAGCATACGCGAAAGCATTATACCGCCAAATCTGAATACAACGCGTGCTCGCAATGCTCAGCGCTGTACATCAACGAAATGGAATTAGAACGGCACGAGGTGGAAAACCATAAACACGTCGATGAAGGCGTATTCCTGCATAACCTGTACCCGTTCCTATCGTCTGTACTGAACATGAAAATGTCGACGTTCACCAAAGTCAAAGCCGATGACTCGGATTACTCTTGCACCGTATGTGACTACAAAACCAACGATTTGGATCTTTACATACAACATTTACAAGAGAAAAACTGTCGGTCGCTCGCGTGCGATAGCTGTGGCAACGTATACAAGCTACGCAGAGGCCTATTTTCGCATTTGGTCATGAGTTCGTCATGTAATCATGTACAGACTGACAAAACGATACAATGCAAGGAATGCTATCAGTTGATCGGCTCGATGTATTACAAGAACCACATTAGGCAATGTAAACCTGTAAAATGTACTATGTGTAATATTATATTTCATTCCGTCAACGATCTGACTGAACATCAAATTTCTAGGCATCCTCTGTCAATAGAAGTGAAAACCTGCAAGTTTTGTTATAGACAGTGCGTTGGAAAGGTTGCACTCATGAAACACATGACTCGTGTCCACCGTACGGAGCTACATTTGTATAAGTACGAGTGTGTGGATTGCAAAACGGTATTCAAACATCCACAGAAGCTATTCTCGCATTTTTATATGAAACACAAGGACTTAGAGCCTTACACGTGTAAAATATGCAACAAAAAGTTTAAGATACGTAAAAAATTCACAATACACATTAAACTGGACCACAATAGTGTCGGCTTTATTGAGTTCGACAAGAATTACCATGTATATTTTGCCGATAAAAAATCTGAGAACCCCTTCACTCCCACCTGTGTTTTATCAGAAGAAGATAAGAGAATGTGTAACATGTACAGTGAAGTATATAGCCTTCCGAATCAGAAGTCTGATGCATCTGATTACAAATCAATTCTAAATGTACTCTCAGCAACGGAAACAGAGTGCTATATGACAGAATTAGAGAAAAAAATGAAGGAGACCCAACCTAAAAAGCAGAAGCGCAGAAGAAAAACGGGAGGAAGACGAAAGAAAACCGTAGAAAAGGAATACGTAATACAAGATTCAACTGACGAAGATGATATCCCGCTTGTGGAGCTAACAAACAGCAAACCAACGCCAAAAGCATTTCCAGAAAAGCTTTTCTCGAACTATAAAGACAAAAAGGACAACCGTAGGAAAGTAACTTGTACGAAATGCAATAAATACTGTTATACCAAACAAAACTACAAACGTCACATGGCTTTACACAGTAAGAATGAGTTGCAAACATGCATTAAATGCGCTCAAATATTCAACAGTGTTTCAAAGCTTAAAGAACATGTCGAGAAAGAGCATTCCACATCGCAGCTCATCGACACACTGAAGATGTTGCTTGAGAAGAGGAAACAAGGGAGAACATCCACTCATGAGCTGACGATGTCACAAAAATTTGAACAGACCATAAAGAGAGTTAAAACTGACACCACATGTACACCAGCAAAGATAACAGTCGTCAAAGACGGTACCTCCGTGCAGAAGTTCTTAGAAAACTTCTCTCCGGAAGATTCTAAAAAGACTATTGTTATTGAAAGTAATATATCAATAAAACCAGTCACGAGTCCGTTTTACAGGGAGCCTTTCATCACCATGAAAAAATTCACACCCGAACCCCTCAATGCGGAAGTTAAACTGGCCATGCCCGTTAAATTTAAACCAGACTTAAGCGAGAAAGTTAAAGTCAAGGTGCAGTTAGTGCAGAGTCTATTAAAACCCTCAGTTTTCTCCGGCCTGGAGTGCAATGAGAAAATTGAAGGTACAGATGATCACAACTACACGGAATTTGATTCCACATATTATGAGGAGAGCAAAGAATGCATACCGGAAGTCGCTCAGGAGGAAGAAGTAGAAAATCACGATGAACGTAAACACACAATTCATGTTCCACATAAGATAGTCATACCAAAACTACCCGCAAATCATAATATATCAATAGCGCATCTATTACCCGAAGCACCTTATTACAGGATCGTCAAAGTTAATGACGTTCTCAACGATGTTATGCCGGAGCCACCGAAGAAGCCAGTCGAAAAGCCAACACGTCAGGATCTGATTAAGCTACCGGACGGTACCAAGTTAGTGACGGTCAATCCATTGGCTCACTTGTTGGGCGACAAGAAAGTCGATGACATCATGCAACCGTTGAAAAGCAAGTATTACAAGCCAAAGGTTATATCGAATGTCGAGAATGCGTTCACGAAAGCTCTGGAAAAAGCTAACACTCCGACGCATTTCAGGAAAGCGAGCGATAAAGTCGTGAAGAGGGGGCGAAAACGTAAATTGATGTAA

Protein

MGGDANFETVLNIDNDLQYDAEVDVICSICNAEFLDPGDLKQHLKVHSTVSTDTERRKTCDFCECKYADVEEYAYHIRDSHLAASKFCQLCSRVFIDFNKYKQHTRKHYTAKSEYNACSQCSALYINEMELERHEVENHKHVDEGVFLHNLYPFLSSVLNMKMSTFTKVKADDSDYSCTVCDYKTNDLDLYIQHLQEKNCRSLACDSCGNVYKLRRGLFSHLVMSSSCNHVQTDKTIQCKECYQLIGSMYYKNHIRQCKPVKCTMCNIIFHSVNDLTEHQISRHPLSIEVKTCKFCYRQCVGKVALMKHMTRVHRTELHLYKYECVDCKTVFKHPQKLFSHFYMKHKDLEPYTCKICNKKFKIRKKFTIHIKLDHNSVGFIEFDKNYHVYFADKKSENPFTPTCVLSEEDKRMCNMYSEVYSLPNQKSDASDYKSILNVLSATETECYMTELEKKMKETQPKKQKRRRKTGGRRKKTVEKEYVIQDSTDEDDIPLVELTNSKPTPKAFPEKLFSNYKDKKDNRRKVTCTKCNKYCYTKQNYKRHMALHSKNELQTCIKCAQIFNSVSKLKEHVEKEHSTSQLIDTLKMLLEKRKQGRTSTHELTMSQKFEQTIKRVKTDTTCTPAKITVVKDGTSVQKFLENFSPEDSKKTIVIESNISIKPVTSPFYREPFITMKKFTPEPLNAEVKLAMPVKFKPDLSEKVKVKVQLVQSLLKPSVFSGLECNEKIEGTDDHNYTEFDSTYYEESKECIPEVAQEEEVENHDERKHTIHVPHKIVIPKLPANHNISIAHLLPEAPYYRIVKVNDVLNDVMPEPPKKPVEKPTRQDLIKLPDGTKLVTVNPLAHLLGDKKVDDIMQPLKSKYYKPKVISNVENAFTKALEKANTPTHFRKASDKVVKRGRKRKLM

Uniprot

H9IWJ2 A0A2A4JHE8 A0A2H1WE84

Pubmed

19121390

EMBL

BABH01021287 NWSH01001512 PCG71014.1 ODYU01008079 SOQ51379.1

Proteomes

UP000005204 UP000218220

PRIDE

H9IWJ2

Pfam

PF00096 zf-C2H2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IWJ2 A0A2A4JHE8 A0A2H1WE84

PDB

5WJQ E-value=1.43143e-05, Score=120

KEGG

101746508 no KO assigned | (RefSeq) gastrula zinc finger protein xFG20-1-like

GO

GO:0003676 GO:0046872 GO:0006810 GO:0006378 GO:0016787 GO:0008235 GO:0019538 GO:0030145 GO:0015923 GO:0005634 GO:0006260

Length:

906

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000740000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00007

outside

1 - 906

Pi

277.324945

Theta

234.993235

Tajima's D

0.665802

CLR

0.515047

CSRT

0.56077196140193

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics