Gene

KWMTBOMO06262

Pre Gene Modal

BGIBMGA001816

Annotation

PREDICTED:_uncharacterized_protein_LOC106712217_isoform_X2_[Papilio_machaon]

Location

Bomo_Chr11(+):3476436-3478419      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.046

CDS

ATGACGCCCACTAAGCCCGCAGCCACTAATGGCGATATCGACGAGGAGAGCCTTTCCCCGACATCAGAAGTGGGATCGGTGCAGGCACAAAACGTGAACGAACAGACGACGGCAAATGATGGATGGCGTGCGTTATTTGAAGCACAACAAACCAGCATGAAGCTACTCGTGGAGGCTTTGACTAAACCACCGAATCTTGAGGATAAAAACATCACGCTGCCTAAGTTTCAACCGGATGATGCAAACACTGACGCCCGGGCCTGGCTGGCCACGGCGGACATTTGCTTATCGGATCGTGAGATACAGGGAAGTAAATTAATTCTCATTCTTAGTAAGGCTATGAAAGGGTCGGCTGCAACATGGTTTTCTCAAATAGTTTTTCCTAATATGAAATGGGTAGAATTTAAGGAAATTTTTATTTCTCGATTTGTTACGTTAGAAACATGTGCAGCGACGTTATTGAAGATGCTTACTGGTAAACCACAAGAAGGTGAATGTCTTGCTGCATATGCAAGCCGTTTATTTACCTTACTCATGTCACGATGGAGTAATTTAGAAAAGGAAGAAATGGTGGTGTCTTTAATACTTGCACACATGGGACAAATTGAGCCACGGTTACAACGCAATATTTTTGCGGAAGAAATAACAACCCGCTGTAAAATGCAACGCGAACTAATGGCTTTTTCTTATCGCAAACGGAGCTACCAAGAGATGACAAAGGCCGTTGCAAGCAATACGCACGATAACAAACTTCCTAAATTAAGTTCTGGTTTCACAAAATGTTACGCTTGTGGAAAGCTTGGCCATAAATCTAATGAATGTTTCAGTCGGTCGCATGAAAAACAGCAAACAACTCCGATCTTTGAACACCCTGATATAGCTGAGGGTAAGCGTGCCCCGGTGACTTGCTACAAGTGTGGTGTTGAAGGTCATGTGGCATCGCGGTGCTCAAAAACATGGTCAGTTGCAAGTAATAGTGCACAACCCACCGTCGCACCCAGCATCGTGAAGCGAGTGAACGTGTGTGGTATGAAGCCTGTCACCGGGATAATTACACAATTTGATATCGATGATGCACGGCCTTCAACATCACACGAGGACGTGTGA

Protein

MTPTKPAATNGDIDEESLSPTSEVGSVQAQNVNEQTTANDGWRALFEAQQTSMKLLVEALTKPPNLEDKNITLPKFQPDDANTDARAWLATADICLSDREIQGSKLILILSKAMKGSAATWFSQIVFPNMKWVEFKEIFISRFVTLETCAATLLKMLTGKPQEGECLAAYASRLFTLLMSRWSNLEKEEMVVSLILAHMGQIEPRLQRNIFAEEITTRCKMQRELMAFSYRKRSYQEMTKAVASNTHDNKLPKLSSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDIAEGKRAPVTCYKCGVEGHVASRCSKTWSVASNSAQPTVAPSIVKRVNVCGMKPVTGIITQFDIDDARPSTSHEDV

Uniprot

A0A2A4J968   A0A212FKQ3   H9JY44   V5GW46   B7S8P8   A0A0A9WXF0   + More
A0A0A9WAU2   A0A0A9X280   A0A146KPX1   A0A0A9WJJ8   A0A0A9WTW7   A0A034WTN4   A0A146LYI8   A0A0J7K0K0   V5GS65   A0A0A9W590   A0A0A9WUU5   A0A0A9W3H2   Q24310   A0A146KNB2   A0A0K8TH57   A0A0A9YDB1   A0A0A9X2S0   A0A146L933   A0A3Q0JLL1   A0A146M6T9   A0A146KSC7   A0A0A9XB05   A0A0A9XED9   A0A0A9X8W6   A0A0A9X8W2   A0A146LW03   A0A146M7T2   A0A146LBK3   A0A146KXF1   A0A212FFF0   A0A212FKK3   A0A0A9ZD12   A0A2H1X3U8   V5G372   A0A396HME1   J9JJ45   A0A139W9F7   A0A2A4K5M9   A0A2S2PGQ9  

Pubmed

22118469    19121390    25401762    26823975    25348373    2464689    + More
30397259    18362917    19820115   

EMBL

NWSH01002289    PCG68667.1    AGBW02008003    OWR54321.1    BABH01042131    GALX01004028    + More
JAB64438.1    EF710649    ACE75273.1    GBHO01032416    JAG11188.1    GBHO01040011    JAG03593.1    GBHO01032414    JAG11190.1    GDHC01020530    JAP98098.1    GBHO01036023    GBHO01032007    JAG07581.1    JAG11597.1    GBHO01032415    JAG11189.1    GAKP01001275    JAC57677.1    GDHC01005968    JAQ12661.1    LBMM01018830    KMQ83681.1    GALX01004029    JAB64437.1    GBHO01040616    GBHO01040615    JAG02988.1    JAG02989.1    GBHO01032413    JAG11191.1    GBHO01040617    JAG02987.1    X14037    CAA32198.1    GDHC01020618    GDHC01011843    JAP98010.1    JAQ06786.1    GBRD01000898    JAG64923.1    GBHO01013472    GBHO01013470    JAG30132.1    JAG30134.1    GBHO01032199    GBRD01000897    JAG11405.1    JAG64924.1    GDHC01015012    JAQ03617.1    GDHC01003161    JAQ15468.1    GDHC01019258    JAP99370.1    GBHO01026470    JAG17134.1    GBHO01026466    JAG17138.1    GBHO01026462    JAG17142.1    GBHO01026467    JAG17137.1    GDHC01006796    JAQ11833.1    GDHC01003813    JAQ14816.1    GDHC01014659    JAQ03970.1    GDHC01018907    JAP99721.1    AGBW02008828    OWR52464.1    AGBW02008055    OWR54220.1    GBHO01026136    GBHO01026135    GBHO01026133    GBHO01026132    GBHO01026130    GBHO01003920    GBHO01003919    GBHO01003918    GBHO01003917    GBHO01003916    JAG17468.1    JAG17469.1    JAG17471.1    JAG17472.1    JAG17474.1    JAG39684.1    JAG39685.1    JAG39686.1    JAG39687.1    JAG39688.1    ODYU01013294    SOQ60001.1    GALX01004016    JAB64450.1    PSQE01000005    RHN53603.1    ABLF02008401    ABLF02008404    KQ972323    KXZ75922.1    NWSH01000145    PCG79083.1    GGMR01016004    MBY28623.1   

Proteomes

UP000218220    UP000007151    UP000005204    UP000036403    UP000079169    UP000265566    + More
UP000007819    UP000007266   

PRIDE

H9JY44    Q24310   

Pfam

PF00098   zf-CCHC        + More
PF13843   DDE_Tnp_1_7
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00665   rve
PF00078   RVT_1
PF17917   RT_RNaseH
PF00077   RVP
PF00403   HMA
PF03732   Retrotrans_gag
PF13873   Myb_DNA-bind_5
PF14291   DUF4371

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
IPR029526   PGBD       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR042246   ZCCHC9       
IPR041373   RT_RNaseH       
IPR001995   Peptidase_A2_cat       
IPR018061   Retropepsins       
IPR001969   Aspartic_peptidase_AS       
IPR017969   Heavy-metal-associated_CS       
IPR036163   HMA_dom_sf       
IPR005162   Retrotrans_gag_dom       
IPR006121   HMA_dom       
IPR028002   Myb_DNA-bind_5       
IPR025398   DUF4371       

SUPFAM

SSF57756   SSF57756        + More
SSF53098   SSF53098       
SSF50630   SSF50630       
SSF55008   SSF55008       

Gene 3D

2.40.70.10     3.30.420.10    

CDD

cd00371  HMA

ProteinModelPortal

A0A2A4J968   A0A212FKQ3   H9JY44   V5GW46   B7S8P8   A0A0A9WXF0   + More
A0A0A9WAU2   A0A0A9X280   A0A146KPX1   A0A0A9WJJ8   A0A0A9WTW7   A0A034WTN4   A0A146LYI8   A0A0J7K0K0   V5GS65   A0A0A9W590   A0A0A9WUU5   A0A0A9W3H2   Q24310   A0A146KNB2   A0A0K8TH57   A0A0A9YDB1   A0A0A9X2S0   A0A146L933   A0A3Q0JLL1   A0A146M6T9   A0A146KSC7   A0A0A9XB05   A0A0A9XED9   A0A0A9X8W6   A0A0A9X8W2   A0A146LW03   A0A146M7T2   A0A146LBK3   A0A146KXF1   A0A212FFF0   A0A212FKK3   A0A0A9ZD12   A0A2H1X3U8   V5G372   A0A396HME1   J9JJ45   A0A139W9F7   A0A2A4K5M9   A0A2S2PGQ9  

PDB

6DNH     E-value=0.0114488,     Score=91

KEGG

101745939    no KO assigned | (RefSeq) uncharacterized LOC101745939

GO

GO:0008270   GO:0003676   GO:0015074   GO:0003964   GO:0016746   GO:0008233   GO:0004190   GO:0004008   GO:0005634   GO:0006378   GO:0016787   GO:0008235   GO:0019538   GO:0030145   GO:0015923   GO:0006260  

PANTHER

PTHR46242  

Length:

368

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0987799999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02893

outside

1  -  368

 

 

Pi

59.996772

Theta

77.950267

Tajima's D

-0.552849

CLR

0.015535

CSRT

0.230838458077096

Interpretation

Uncertain