Silkworm Genome Informatics Database

Gene

KWMTBOMO06253

Annotation

PREDICTED:_UPF0547_protein_C16orf87_homolog_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr11(+):3354075-3356621 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.386

CDS

ATGCTCAAAGAAAGTAATCAAGCTTATGCTGGATTTCTGTCTGAAAAAGGATACTTGATATCGCCGAAGAAAAGGTCTTTATCGAGATCCATAGATGAGGACTCTAAAAACAGTAGAGAGAAAACTGAAAATGCTTCCGCGATAGCGCTGCCAGTGGCTTCGCGCGCCCGCCGCCGCCGCGCCCTACGACGGACCCGCCGATCCCCGCCAGCGTCCGTGAACAACTCACGCGACCCCACACCCAATCTAAGGCCCGCCCAATTAGCTAGATGCAGATTAATACTGCAAGAGATCAACAGAAAGATGAGCGCTGTCACCTGGCATCCGCCTGCCGAATAA

Protein

MLKESNQAYAGFLSEKGYLISPKKRSLSRSIDEDSKNSREKTENASAIALPVASRARRRRALRRTRRSPPASVNNSRDPTPNLRPAQLARCRLILQEINRKMSAVTWHPPAE

Uniprot

A0A2A4JK04 A0A2W1BM54 A0A2A4JLF4 A0A3S2NC43 A0A2H1VFZ9 A0A212ET19 + More
A0A212F8E4 S4PSN2

Pubmed

28756777 22118469 23622113

EMBL

NWSH01001144 PCG72415.1 KZ150084 PZC73790.1 PCG72414.1 RSAL01000109 + More
RVE47204.1 ODYU01002359 SOQ39757.1 AGBW02012664 OWR44627.1 AGBW02009738 OWR50012.1 GAIX01013493 JAA79067.1

Proteomes

UP000218220 UP000283053 UP000007151

Interpro

IPR040246 C16orf87-like

ProteinModelPortal

A0A2A4JK04 A0A2W1BM54 A0A2A4JLF4 A0A3S2NC43 A0A2H1VFZ9 A0A212ET19 + More
A0A212F8E4 S4PSN2

KEGG

101743485 no KO assigned | (RefSeq) UPF0547 protein C16orf87-like

GO

PANTHER

PTHR31101

Length:

112

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00034

Exp number, first 60 AAs:

0.00034

Total prob of N-in:

0.33311

outside

1 - 112

Pi

214.052776

Theta

141.124135

Tajima's D

1.472641

CLR

0.055257

CSRT

0.783660816959152

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics