SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06248  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001811
Annotation
PREDICTED:_oxysterol-binding_protein-related_protein_8-like_[Amyelois_transitella]
Full name
Oxysterol-binding protein      
Location in the cell
Mitochondrial   Reliability : 2.065 Nuclear   Reliability : 1.418
 

Sequence

CDS
ATGATGAGTTCCTCTCCCGTCGTTGAGCATTCCTCCCCTTCCACCACCCCCTCGTCACCAGCTCTGAGGCCCGACAGCGGACACTTTCACTCCTCAACACCAAACTACACCGGCAGGAAGCATCAAAATCCACCGTTGAACGTCGTGCTCCCGTCAGCGGCGCCGACAACAACGCCCATATACGGCGAACCAACTTTGACTCCGCCGCCGAGGTCACCCGGTGCGGCCGCCGTGACTCCTGCCTCGGGAGATTCGAGGGCCCATCCACCGGACGGAACCTCCTCGGATAAGTCCTCCGAGACCGCTGTAGGGGGCGTTTGTCGGCCGGCCAGCACGGCTCTCTCCAGGAAGGAGAGCTACAAGGCCCAGAGGCAGAACTATCGTCGTGAAAAGAAGAGAGCCGCCTCAGCTTTGTTGCACTCCATCGAGGATCCATCGGTCGTGGTCCTGGCTGATTGGCTAAAGGTACGAGGCTCGCTCAAATCTTGGACCAAACTATGGTGCGTTCTGAAGCCGGGTCTGCTCTTGCTGTATAAGAGCCCGAAGGCGAAGAGCAGTCACTGGGTGGGGACGGTGTTGCTGACTTCGTGTCAGGTGATCGAACGGCCAAGCAAAAAGGACGGCTTCTGCTTTAAGCTCTATCATCCGCTGGAGCAGAGTATCTGGGCGCCGAGGGGGCCTCATAATGAGACTATAGGTGCGGTGATCCAGCCATTGCCGACTGCCCACCTGATCTTCCGGGCCCCGTCCCAGGCCGCGGGACATTGCTGGCTGGATGGACTGGAATTGGCATTGAGATGCAGCAATGCTATGCTAAGATGCTCTCGCTCGCGCCCAGAGGAAACTGTCGCATCCGAAGCCCCGGCCACCAGAACGAACATCTCCCACGAGGAACTCGAGAAACATTTCAACGAACATGAATTAGCCGGCGTCGGTTCTGACACTGACAGCGAAGGTTCGAGGGGCGGGATGCCGGAGCCGGTCCACGAGGACCCGACCGCCAGGAAGCAGAGCGTCCTGGCCAGGATCGAGAGGAGCTACATCGAAGATCCGGACATTGAAATCGGTGCTGCAGGAGAATTAGTGGAGGAAGTAGCGGAAGAGAACAAATCTCTGCTTTGGTTCCTGCTGAAACAGGTCAGGCCCGGCATGGACCTTTCGAAGGTCGTGCTCCCGACCTTCATCCTGGAGCCGAGGTCGTTTCTGGACAAGTTATCCGACAATTACTATCACGCTGATCTTCTAGGCCAGGCCCAAACTCTAGAAGATCCGTATCAGAGGTTCAAGAGCGTGCTCCGCTGGTACCTGTCAGGGCTTTACAGAAAACCGAAGGGTCTTAAAAAACCCTACAATCCAGTTTTGGGCGAGACGTTCCGATGCTGCTGGAAGCATAGGCAGCCGGAATCCTACACTTACTATGTGGCTGAGCAGGTTTCCCATCACCCCCCTATTTCAGCCTTCTACATTTCGAACAGAAAGGAGGGTTACGTGATCGAAGGAAGCCTTCTGGCGCGTTCCAAGTTCTATGGTAATTCAACGTCGGCCATATTGGAGGGGTGCGCCAGGATCCACTTGCTGAACTGGGGCGAGACCTATGTGACGACAGCACCGTATGCCCATTGCAAGGGTATCGTTATAGGAACGCTTAGTATGGAGTTGGGAGGAAAGGTCCACATCATGTGCACCGACACAGGGTACCAAGCTGACGTCGAGTTCAAATTGAGGTCCTTTTTGGGTGGCTCCGATCAAACGAACGCCATCTCCGGACGGATCAAGAAAGGCAAGGACACAGTGGCCACAGTCGAGGGCTATTGGGATGGAAAAATAGACATTAAAGACAAGAAAACAGGGGAAGAATCAAATCTGTTGGACGTCGGTTTCCTGAAAGAGCAGCGCCTGCCCAGGTACCTGGTGCGGCTGGAGAACCAGCAGGACTACGAGTCGCAGAGGCTCTGGCTGAAGGTCTCGGAGGCGATACAGAACGATGATCAGATCGCGGCCACGGAACAGAAGACCGTGATAGAGGAAGCCCAGAGAGCCAGGGCGAGGAACCTGGTTGCTCCGTGGGTGCCGCGTTACTTCCACCGAGCAACCCAAGGCACCGTTCCCGATGGTATTGTTGATCAAGGCTGGAAATACAATCACGTGAATACGAGTCCGTGGCAACCTGACGAGGTGCTGGAATACGAGGAGGACTTCGTTATAAGGACGCTCCGCTCGGGGGGCGGATCCCCCAGGGCGGGACCCGAGACCAGACACCGCGAGCGGGATCTCTCGCACAGGGCCTCCGACTCTGACAGCCGAGACGAGCTCGCCAGAAGATCTAAGACTTCTACACGAACCCTGAAACAGACGCTGTATTCGATCGACGCGAACCTCAGAGAGCAGAAGCTGGCCATCATGAGGCTCTCAAAGGCCGTAGACCTGCTAACCGAGGGTCAGAAGGCGACCAGACCCCAGAGTTTGGGTCGCGTGCCGAGCACGGGACACTCGTGGGATCTGTTCGGCGGGTTCGTACTGGCGATGGTGTTGCAAGCGTTGCTCAACTGGATTTTCTACCAGAAAGACTGA
Protein
MMSSSPVVEHSSPSTTPSSPALRPDSGHFHSSTPNYTGRKHQNPPLNVVLPSAAPTTTPIYGEPTLTPPPRSPGAAAVTPASGDSRAHPPDGTSSDKSSETAVGGVCRPASTALSRKESYKAQRQNYRREKKRAASALLHSIEDPSVVVLADWLKVRGSLKSWTKLWCVLKPGLLLLYKSPKAKSSHWVGTVLLTSCQVIERPSKKDGFCFKLYHPLEQSIWAPRGPHNETIGAVIQPLPTAHLIFRAPSQAAGHCWLDGLELALRCSNAMLRCSRSRPEETVASEAPATRTNISHEELEKHFNEHELAGVGSDTDSEGSRGGMPEPVHEDPTARKQSVLARIERSYIEDPDIEIGAAGELVEEVAEENKSLLWFLLKQVRPGMDLSKVVLPTFILEPRSFLDKLSDNYYHADLLGQAQTLEDPYQRFKSVLRWYLSGLYRKPKGLKKPYNPVLGETFRCCWKHRQPESYTYYVAEQVSHHPPISAFYISNRKEGYVIEGSLLARSKFYGNSTSAILEGCARIHLLNWGETYVTTAPYAHCKGIVIGTLSMELGGKVHIMCTDTGYQADVEFKLRSFLGGSDQTNAISGRIKKGKDTVATVEGYWDGKIDIKDKKTGEESNLLDVGFLKEQRLPRYLVRLENQQDYESQRLWLKVSEAIQNDDQIAATEQKTVIEEAQRARARNLVAPWVPRYFHRATQGTVPDGIVDQGWKYNHVNTSPWQPDEVLEYEEDFVIRTLRSGGGSPRAGPETRHRERDLSHRASDSDSRDELARRSKTSTRTLKQTLYSIDANLREQKLAIMRLSKAVDLLTEGQKATRPQSLGRVPSTGHSWDLFGGFVLAMVLQALLNWIFYQKD

Summary

Similarity
Belongs to the OSBP family.
EMBL
GBXI01009141    JAD05151.1    GDHF01027111    JAI25203.1    GBXI01013268    GBXI01001847    + More
JAD01024.1    JAD12445.1    KK852747    KDR17275.1    GBXI01006518    JAD07774.1    GDHF01009207    JAI43107.1    GBXI01008531    JAD05761.1    GDHF01008327    JAI43987.1    GBXI01010224    JAD04068.1    GAMC01018020    JAB88535.1    GAMC01018019    JAB88536.1    GAMC01018018    JAB88537.1    OUUW01000007    SPP82602.1    JR038521    AEY58295.1    JR038520    AEY58294.1    KA646688    AFP61317.1    CH902623    KPU72776.1    CH940650    KRF83462.1    KPU72774.1    KPU72775.1    CH933806    KRG02146.1    CM000070    KRT00397.1    KRG02147.1    GBYB01014021    JAG83788.1    KA649597    AFP64226.1    EIM52690.2    KRF83458.1    GL442815    EFN62988.1    AE014297    ADV37341.2    KRG02145.1    EDW16457.2    GFDL01012126    JAV22919.1    GFDL01012089    JAV22956.1    QOIP01000005    RLU22659.1    ADV37342.1    GFDL01012072    JAV22973.1    GFDL01011908    JAV23137.1    CH477665    EAT37534.1    EAL28026.4    EIM52691.2    GGFJ01002132    MBW51273.1    EDV30290.2    KRF83460.1    GGFM01006678    MBW27429.1    ADV37340.2    BT099594    ACU45747.1    AAG22160.3    GGFL01004761    MBW68939.1    JXUM01080171    JXUM01080172    JXUM01080173    JXUM01080174    KQ563170    KXJ74350.1    GGFL01004760    MBW68938.1    GGFK01003108    MBW36429.1    GGFK01003095    MBW36416.1    GGFK01003084    MBW36405.1    DS233113    EDS28222.1    GGFK01003190    MBW36511.1    GGFK01003070    MBW36391.1    AAAB01008820    EAA05398.5    KPU72772.1    DS235803    EEB17274.1    EDW67775.2    DS497756    EFA13214.1    CH964251    KRF99749.1    EDW83208.2    KB631669    ERL85221.1    APGK01020350    KB740193    ENN81107.1    GEZM01099665    JAV53218.1    GEZM01099666    JAV53217.1    CH480842    EDW49682.1    BT099929    ACX36505.1    AY051614    AAK93038.1    AAN13825.4    KRG02148.1    JH431728    KB202237    ESO91605.1    JH818640    EKC37897.1    GDIP01183572    GDIQ01218534    GDIP01100881    LRGB01002559    JAJ39830.1    JAK33191.1    KZS07155.1    GDIQ01125277    JAL26449.1    GDIQ01126975    JAL24751.1    GDIQ01233140    JAK18585.1    GDIQ01226082    JAK25643.1    GDIP01103838    JAL99876.1   
Pfam
PF00169   PH        + More
PF01237   Oxysterol_BP
Interpro
IPR001849   PH_domain        + More
IPR011993   PH-like_dom_sf       
IPR018494   Oxysterol-bd_CS       
IPR000648   Oxysterol-bd       
IPR037239   OSBP_sf       
SUPFAM
SSF144000   SSF144000       
Gene 3D
PDB
4B2Z     E-value=3.17892e-49,     Score=496

Ontologies

Topology

Length:
856
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
20.59102
Exp number, first 60 AAs:
0.00111
Total prob of N-in:
0.00019
outside
1  -  830
TMhelix
831  -  853
inside
854  -  856
 
 

Population Genetic Test Statistics

Pi
230.733643
Theta
156.58888
Tajima's D
1.570518
CLR
0.387793
CSRT
0.798810059497025
Interpretation
Uncertain
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