Gene

KWMTBOMO06244  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001806

Annotation

cleavage_and_polyadenylation_specific_factor_5_[Bombyx_mori]

Location

Bomo_Chr11(+):3182175-3184212      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.136 Mitochondrial   Reliability : 1.066 Nuclear   Reliability : 1.205

CDS

ATGAATTTAACTCTCAATAGGTCTATTAATTTGTATCCGCTTACGAATTACACGTTCGGAACTAAGGAGCCGCTGTTCGAGAAAGACGCGTCGGTCCCGGCGAGGTTCCAGAGGATGCGAGAGGAGTTTTGTAAAATCGGAATGAGAAGGTCAGTCGAAGGTGTGTTATTAGTACATGAACATGGTCTCCCTCATGTGCTGTTACTGCAACTCGGCACTGCGTTTTTCAAGTTGCCCGGTGGAGAATTGAATCCTGGAGAGGATGAAATTGATGGTTTGAAGAGGCTTCTCACAGAGACTTTAGGCAGGCAAGACGGTGTCAAACAGGAATGGCTCATTGAAGACACAATAGGAAACTGGTGGCGACCGAATTTCGAACCACCGCAATATCCATACATTCCGCCTCACATCACGAAACCAAAGGAGCATAAGCGCCTATTCCTGGTTCAACTGCAAGACAGAGCTCTGTTCGCTGTACCGAAGAATTACAAGCTGGTTGCGGCACCATTGTTTGAATTGTACGATAATGCTCAGGGATACGGACCTATAATATCGTCGTTGTCTCAGAGTTTATGTCGTTTTAATTTCATTTATATGTGA

Protein

MNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFIYM

Uniprot

Q1HQ96   S4P3R5   A0A1E1WIP5   A0A2W1BQ18   A0A2A4J8P7   A0A2H1WRK1   + More
A0A067QW03   A0A1B6EAM4   E2C6H0   A0A0L7QWX6   A0A2A3EQM6   V9IF30   A0A088A0J5   A0A154P8R7   A0A195CYZ3   A0A195FWH7   A0A151WVX6   A0A026WUE0   A0A151IXD2   F4WUX3   A0A195AUB3   A0A158P0R1   A0A0R3P7I2   A0A1I8PR01   A0A1I8ML55   A0A2C9GRS2   Q7QJ32   A0A0Q9WZL1   A0A1B6MAG1   A0A0J9RSI2   Q0E8G6   A0A0R1DUQ0   A0A0Q5U3M9   A0A182JJZ8   A0A1W4VM99   A0A182MBC9   A0A1B6EQV4   A0A1B6JV95   A0A0P9C4Y2   A0A0K8TRK9   A0A1L8DGK5   A0A1B0CSL1   A0A182G2Q1   Q17DC9   A0A3B0JP98   A0A336M9B6   A0A2M4CT68   A0A2M4AXE1   A0A0Q9WIP5   A0A0Q9XMR2   A0A1Q3G177   A0A069DXT7   A0A1L8DGU6   A0A0P4VII3   A0A0K8W3P3   A0A0A1WSL8   A0A034WNR1   A0A0M5J0W6   U5EVX9   A0A0T6B375   A0A0C9S034   A0A2P8Z8W4   A0A1Y1K6G0   A0A182XLL2   E0VW43   A0A232ENQ1   D7EI10   A0A023F8J5   A0A182YMM7   R4FKV7   A0A293LYT4   A0A2J7QTZ6   A0A0V0GAF0   A0A069DPX3   A0A2R5LGY6   A0A131XD89   A0A131YR84   L7ME45   A0A0A9VUK6   A0A182NKR8   A0A023GGI1   A0A1E1XBK4   K7ISQ4   A0A0P5VTV5   E2AFE5   G3MM11   A0A0N8DXN1   A0A0P4YBY5   A0A0P6J4F1   A0A0P5S419   E9HF00   A0A087T658   A0A1A9WTL7   A0A0P6EY85   A0A0P5MVV3   A0A1A9Y0S4   D3TNW4   A0A0P5PLN6   A0A0P5V6E2   A0A0P5V2A3  

Pubmed

19121390    23622113    28756777    24845553    20798317    24508170    + More
30249741    21719571    21347285    15632085    17994087    25315136    12364791    14747013    17210077    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    26369729    26483478    17510324    26334808    27129103    25830018    25348373    29403074    28004739    20566863    28648823    18362917    19820115    25474469    25244985    28049606    26830274    25576852    25401762    26823975    28503490    20075255    22216098    21292972    20353571   

EMBL

BABH01021254    DQ443156    ABF51245.1    GAIX01006329    JAA86231.1    GDQN01004288    + More
JAT86766.1    KZ150084    PZC73793.1    NWSH01002344    PCG68487.1    ODYU01010528    SOQ55700.1    KK852893    KDR14219.1    GEDC01002335    JAS34963.1    GL453156    EFN76452.1    KQ414705    KOC63128.1    KZ288201    PBC33572.1    JR040285    AEY59066.1    KQ434846    KZC08262.1    KQ977141    KYN05354.1    KQ981200    KYN45020.1    KQ982691    KYQ52044.1    KK107102    QOIP01000005    EZA59622.1    RLU22870.1    KQ980819    KYN12684.1    GL888378    EGI61987.1    KQ976738    KYM75647.1    ADTU01005767    ADTU01005768    CH379067    KRT07411.1    APCN01000179    AAAB01008807    EAA04203.3    CH963847    KRF97624.1    GEBQ01007071    JAT32906.1    CM002912    KMY98632.1    AE014296    ABI31246.1    CM000159    KRK00876.1    CH954178    KQS43695.1    AXCM01002371    GECZ01029428    GECZ01018463    JAS40341.1    JAS51306.1    GECU01030530    GECU01013832    GECU01004575    JAS77176.1    JAS93874.1    JAT03132.1    CH902618    KPU78791.1    GDAI01000827    JAI16776.1    GFDF01008498    JAV05586.1    AJWK01026189    AJWK01026190    AJWK01026191    JXUM01039933    KQ561224    KXJ79300.1    CH477297    CH477216    EAT44361.1    EAT47515.1    OUUW01000002    SPP77320.1    UFQS01000716    UFQS01000742    UFQT01000716    UFQT01000742    SSX06379.1    SSX26866.1    GGFL01004291    MBW68469.1    GGFK01012133    MBW45454.1    CH940647    KRF84472.1    CH933809    KRG06206.1    GFDL01001505    JAV33540.1    GBGD01002715    JAC86174.1    GFDF01008499    JAV05585.1    GDKW01001974    JAI54621.1    GDHF01006632    JAI45682.1    GBXI01012495    JAD01797.1    GAKP01002678    GAKP01002677    JAC56274.1    CP012525    ALC43636.1    GANO01001671    JAB58200.1    LJIG01016003    KRT81907.1    GBYB01013759    GBYB01013761    JAG83526.1    JAG83528.1    PYGN01000143    PSN52932.1    GEZM01093979    JAV56038.1    DS235817    EEB17599.1    NNAY01003100    OXU19980.1    KQ972204    EFA12938.2    GBBI01001011    JAC17701.1    ACPB03017369    ACPB03017370    GAHY01001683    JAA75827.1    GFWV01008282    MAA33011.1    NEVH01011192    PNF32060.1    GECL01001219    JAP04905.1    GBGD01002761    JAC86128.1    GGLE01004667    MBY08793.1    GEFH01004513    JAP64068.1    GEDV01007459    JAP81098.1    GACK01002962    JAA62072.1    GBHO01044215    GBRD01005297    GDHC01014014    JAF99388.1    JAG60524.1    JAQ04615.1    GBBM01002366    JAC33052.1    GFAC01002564    JAT96624.1    AAZX01007951    GDIP01095718    JAM07997.1    GL439108    EFN67838.1    JO842912    AEO34529.1    GDIQ01081820    JAN12917.1    GDIP01233302    JAI90099.1    GDIQ01013402    JAN81335.1    GDIQ01152793    GDIQ01092666    GDIP01074909    GDIQ01031437    JAL59060.1    JAM28806.1    GL732632    EFX69694.1    KK113612    KFM60597.1    GDIQ01056879    JAN37858.1    GDIQ01152792    JAK98933.1    CCAG010000251    EZ423116    ADD19392.1    GDIQ01137151    JAL14575.1    GDIP01119661    JAL84053.1    GDIP01121654    JAL82060.1   

Proteomes

UP000005204    UP000218220    UP000027135    UP000008237    UP000053825    UP000242457    + More
UP000005203    UP000076502    UP000078542    UP000078541    UP000075809    UP000053097    UP000279307    UP000078492    UP000007755    UP000078540    UP000005205    UP000001819    UP000095300    UP000095301    UP000075840    UP000007062    UP000007798    UP000000803    UP000002282    UP000008711    UP000075880    UP000192221    UP000075883    UP000007801    UP000092461    UP000069940    UP000249989    UP000008820    UP000268350    UP000008792    UP000009192    UP000092553    UP000245037    UP000076407    UP000009046    UP000215335    UP000007266    UP000076408    UP000015103    UP000235965    UP000075884    UP000002358    UP000000311    UP000000305    UP000054359    UP000091820    UP000092443    UP000092444   

PRIDE

Q1HQ96    Q0E8G6   

Pfam

PF13869   NUDIX_2        + More
PF13864   Enkurin

Interpro

IPR000086   NUDIX_hydrolase_dom        + More
IPR015797   NUDIX_hydrolase-like_dom_sf       
IPR016706   Cleav_polyA_spec_factor_su5       
IPR027012   Enkurin_dom       

SUPFAM

SSF55811   SSF55811       

ProteinModelPortal

Q1HQ96   S4P3R5   A0A1E1WIP5   A0A2W1BQ18   A0A2A4J8P7   A0A2H1WRK1   + More
A0A067QW03   A0A1B6EAM4   E2C6H0   A0A0L7QWX6   A0A2A3EQM6   V9IF30   A0A088A0J5   A0A154P8R7   A0A195CYZ3   A0A195FWH7   A0A151WVX6   A0A026WUE0   A0A151IXD2   F4WUX3   A0A195AUB3   A0A158P0R1   A0A0R3P7I2   A0A1I8PR01   A0A1I8ML55   A0A2C9GRS2   Q7QJ32   A0A0Q9WZL1   A0A1B6MAG1   A0A0J9RSI2   Q0E8G6   A0A0R1DUQ0   A0A0Q5U3M9   A0A182JJZ8   A0A1W4VM99   A0A182MBC9   A0A1B6EQV4   A0A1B6JV95   A0A0P9C4Y2   A0A0K8TRK9   A0A1L8DGK5   A0A1B0CSL1   A0A182G2Q1   Q17DC9   A0A3B0JP98   A0A336M9B6   A0A2M4CT68   A0A2M4AXE1   A0A0Q9WIP5   A0A0Q9XMR2   A0A1Q3G177   A0A069DXT7   A0A1L8DGU6   A0A0P4VII3   A0A0K8W3P3   A0A0A1WSL8   A0A034WNR1   A0A0M5J0W6   U5EVX9   A0A0T6B375   A0A0C9S034   A0A2P8Z8W4   A0A1Y1K6G0   A0A182XLL2   E0VW43   A0A232ENQ1   D7EI10   A0A023F8J5   A0A182YMM7   R4FKV7   A0A293LYT4   A0A2J7QTZ6   A0A0V0GAF0   A0A069DPX3   A0A2R5LGY6   A0A131XD89   A0A131YR84   L7ME45   A0A0A9VUK6   A0A182NKR8   A0A023GGI1   A0A1E1XBK4   K7ISQ4   A0A0P5VTV5   E2AFE5   G3MM11   A0A0N8DXN1   A0A0P4YBY5   A0A0P6J4F1   A0A0P5S419   E9HF00   A0A087T658   A0A1A9WTL7   A0A0P6EY85   A0A0P5MVV3   A0A1A9Y0S4   D3TNW4   A0A0P5PLN6   A0A0P5V6E2   A0A0P5V2A3  

PDB

3N9U     E-value=7.73784e-97,     Score=899

KEGG

732888    K14397 cleavage and polyadenylation specificity factor subunit 5 | (RefSeq) cleavage and polyadenyla

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0005849   GO:0006378   GO:0016787   GO:0003729   GO:0017091   GO:0006397   GO:0008235   GO:0019538   GO:0030145   GO:0015923   GO:0005634   GO:0006260  

PANTHER

PTHR13047  

Length:

199

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14885

Exp number, first 60 AAs:

0.04025

Total prob of N-in:

0.17910

outside

1  -  199

 

 

Pi

403.642569

Theta

225.996522

Tajima's D

2.69609

CLR

0.084021

CSRT

0.96205189740513

Interpretation

Uncertain