Silkworm Genome Informatics Database

Gene

KWMTBOMO06240

Pre Gene Modal

BGIBMGA001804

Annotation

PREDICTED:_zinc_finger_protein_Xfin-like_[Bombyx_mori]

Location

Bomo_Chr11(+):3152235-3158461 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.669

CDS

ATGGAAAGTGATTCCGAAGATAATAGTAAATCTTGTGATTCATGGGATGATGACCCTGAGATAAAGGAAATAAAAGAAATGGAGAAAGACTTAGAAATGCAGATAATGAAAAACATTAAAAAGGAAAAAGTTATCTCTGTTGATTTACCATCTAATTCAACACCGGTCCAGTTAAAGGTGGAAGTGGAAGTCGAACAATATTCAGATAAAGAGGACATTGATGATCCACCGGCAAATGATGATGATGATGATGATGATGATGATGATGATGGTGACGATGATGGTGATGGTGATGATGATGATGATGATGATGATGAAGAAGACATAAGTGACAATAATATTACAAATATTGAGGAGCTCCGAGGAGCGAGTAACTGCAATAATTACAATAGAGCAACATCAGATGTTGAGTCTCTGAGTAAACTTAATGTTTACAAGAAAATAAAGAGCTTCACGGCTCAAGTTCATATATCGGCCGAAGAACTAATCGATGCAGCCAAACATCATCAGGTCTTAGATAATTATGCTGATAAGTTCCTATCAGTGAGAGTTCTAAACTCTTTATTCCGTTGGAACAGGAAAATTTTGGAGGCGGATTTTGCAGAGAGATCAATACAGGTTGCACTGGATAAGTGGATATGTTGGTTCAGACAGTGTACCAGATATTCTGACGTGCCCCAGTTTTACAAGTGTTATATGTGCGATAAGGCCTGGTGGGATTTGGATCCTTTCAGAGAACACCTACGCAAGCATAAGACTGATTATATAGTCAACTTTGAAGATTTAGGGTATGAATCAAATATAGTTGCCTATTTAAGCAAGGAATTAAGGCCTCCGTTTAAAAATATTAGAACCCAAGGAAAATGTTTAAAGTGTGATAGACGGTGCGAGAATCATTTTTTTAAAGCAAACTACAGTCCCATCATACCCGATAAGGGTGATTACCCTTATTTCTGTTTGAAGTGTACAGAGAAATTTCCAACCTGCGCTGCTCGAAGGGTACATGAACAAACACAACATGGGAAACCGCAGTTTCCTTGTTTGTATTGCAAATTGAGTTTCAGCTCTAAACGTATCCTAGAAGATCATCTCCAAAGACATACAGTGAGGTCAGACCGACCAAGCACTATTCCGACGAAATTGTGTGCAGAATGTAATCTTAGATATGCCGTATTCAAAACACACCCGTGCCCTAAGAAGTGGTTCCGTTGGTGCAACCAATGCTACAGACAATTTGATATGAAGGGAGCTCAAGAAATACATGGTTTATTTTCAAAAACAAACGTCAGCTGTAATATATGCTCTCAGAAGTTTTTCAGCGAATGTTCTCTGGTTGATCATTATTTAACGCACACAAACAACTTCACCCTGCAGTATTTGTGCACTAGATGTGGCGTTTTCATTCACAAGGACTTGAGGAAGCAGCACAAGAAACAGTTTCACAATAGGAATCCGTATTACAACAAAATACCATTGGTTTTGCCGTTTATTGTTCCGAAAGCGTTGTTCTTATCGAAGATCGAGGGACTGCCGGGAACTAAAGTTCAAGTCTTGTACGTGGTCGAAACCCCTCCACCTCCTCGAGTGTCAAAGCAGCAAGAACTCAAAGCGGCTCTGGACGGCCTCAAGCAAGACATGTACGAGCATCTATCGCAGTACGCCAACACGTCTCAGACTACCACTCCAACGAGGAACTGTGAAACGACCTGCATTGATCTCACTGAATCCGAGCCCGAGCAAGAGATTAATGTAAAAACAGAAATAAACACTGAGCCCGAGGAATGCGAGGATGACATCATAAACTTAAACATCAACAATATATCGTTAATGAAAACGAGATCCACCGAACAAAATACCACAGAACAGAACAAGGAACTCGAATTAGTTTTGGAAAAAAATAATCAAATTACCAACGAGCCCGGTACGTTTAATATTGAGATATTAAATGTAAATAATGGTACAGATTCGTTTGAAATTCAATTAAAGTATGACAGTGAAAGCAGCTTGAAACAAAGCCAGAGAGAGAAGTCTGTGAGTCACATTGAACACAATATTTCGTCCGATGAATTCGCATCAGATTCCAGCAACGACGAAGGGACCGAGTGCACGGAAAATGGCGACGTAATAAGCGTAAATAAATATCGAGTTAAACAGCCCTGTGTCTGCACGAAATGTAACACAAGATACGATACGCTCGAAAGTTATTTGAGTCATTTCACGAGCCACAATTACCAGTCGAACACGTGTCCGCAGTGTCTGTCAGTGTTTGGCACCCCAATGAAACTGGCCTGGCACTTCAAGACCCACATAAACAGGACGTTCTTGAAGACGAAGTTCCTGGACGGCGACCAGAAATCGGAGAAGCTGTACCGCTGCAAACACTGCAAGCAGATATTCTTCAAGAATGAATTCTTTGAGCACTGGGAGAGTCATTTTGTGTTGGTGCGCTTCGAGGACTCTGAACGCTACGAAACGGCTCTTGAAGTCGGCAAGAGAAACAGAACTATTTCTGAGTCATCGATGAAAACTATAATAGGTATGTTGTAA

Protein

MESDSEDNSKSCDSWDDDPEIKEIKEMEKDLEMQIMKNIKKEKVISVDLPSNSTPVQLKVEVEVEQYSDKEDIDDPPANDDDDDDDDDDDGDDDGDGDDDDDDDDEEDISDNNITNIEELRGASNCNNYNRATSDVESLSKLNVYKKIKSFTAQVHISAEELIDAAKHHQVLDNYADKFLSVRVLNSLFRWNRKILEADFAERSIQVALDKWICWFRQCTRYSDVPQFYKCYMCDKAWWDLDPFREHLRKHKTDYIVNFEDLGYESNIVAYLSKELRPPFKNIRTQGKCLKCDRRCENHFFKANYSPIIPDKGDYPYFCLKCTEKFPTCAARRVHEQTQHGKPQFPCLYCKLSFSSKRILEDHLQRHTVRSDRPSTIPTKLCAECNLRYAVFKTHPCPKKWFRWCNQCYRQFDMKGAQEIHGLFSKTNVSCNICSQKFFSECSLVDHYLTHTNNFTLQYLCTRCGVFIHKDLRKQHKKQFHNRNPYYNKIPLVLPFIVPKALFLSKIEGLPGTKVQVLYVVETPPPPRVSKQQELKAALDGLKQDMYEHLSQYANTSQTTTPTRNCETTCIDLTESEPEQEINVKTEINTEPEECEDDIINLNINNISLMKTRSTEQNTTEQNKELELVLEKNNQITNEPGTFNIEILNVNNGTDSFEIQLKYDSESSLKQSQREKSVSHIEHNISSDEFASDSSNDEGTECTENGDVISVNKYRVKQPCVCTKCNTRYDTLESYLSHFTSHNYQSNTCPQCLSVFGTPMKLAWHFKTHINRTFLKTKFLDGDQKSEKLYRCKHCKQIFFKNEFFEHWESHFVLVRFEDSERYETALEVGKRNRTISESSMKTIIGML

Uniprot

H9IX21

Pubmed

19121390

EMBL

BABH01021250 BABH01021251 BABH01021252 BABH01021253

Proteomes

UP000005204

PRIDE

H9IX21

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IX21

PDB

2I13 E-value=3.7948e-05, Score=116

KEGG

101745212 K09228 KRAB domain-containing zinc finger protein | (RefSeq) zinc finger protein Xfin-like

GO

GO:0003676 GO:0046872 GO:0005622 GO:0006508 GO:0005737 GO:0008235 GO:0019538 GO:0030145 GO:0015923 GO:0005634 GO:0006260

Length:

848

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00374

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00018

outside

1 - 848

Pi

195.967724

Theta

183.925767

Tajima's D

0.378442

CLR

0.097946

CSRT

0.480125993700315

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics