Gene

KWMTBOMO06229  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001800

Annotation

PREDICTED:_ribosomal_protein_L4_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr11(+):2982595-2993346      View in EpiBrowser

Full name

60S ribosomal protein L4      

Alternative Name

L1

Location in the cell

Mitochondrial   Reliability : 2.645

CDS

ATGAGTCTATCGGTAGCCCGACCTTTAGTGTCGGTGTATTCAGAGAAGAGTGAGACGGTGCAGGGTGCAGCCAAGCCCCTCCCGTTCGTATTCAAGGCGCCCATACGTCCGGACCTGGTCAATGATGTTCACGTTTCTATGTCCAAGAACTCGAGGCAGCCCTACTGCGTGAGCAAGGAGGCTGGTCACCAAACCAGTGCCGAATCATGGGGTACCGGACGTGCTGTTGCCCGAATTCCGCGTGTCCGTGGTGGTGGTACCCATAGGTCCGGTCAGGGTGCCTTCGGTAACATGTGTCGTGGTGGACGTATGTTCGCCCCCACGAAGCCCTGGCGGCGCTGGCACCGTCGCGTCAACCTCCGACAGCGGAGAGCGGCCTTGGCAGCAGCCGTTGCTGCTACTGGCGTCCCAGCGCTCGTTCAGGCTAGAGGACACATTATTGAAAAGATTCCCGAGCTTCCCTTGGTTGTAGCCGACAAAGTCCAGGAGATCAACAAGACCAAACAGGCTGTCATCTTCCTGAGGCGCCTCAAGGCATGGTCTGATATCCTTAAGGTGTACAAGTCTCAGCGTCTTCGTGCTGGTAAGGGTAAAATGCGCAACCGTCGTCGTATCCAGCGTAAGGGACCCCTCATAATCTTCAACAAGGATCAGGGTCTGACTCGCGCTTTCCGCAACATCCCCGGTGTGGAGCTCCTGAATGTTAACAAGCTGAACCTCCTGAAGCTGGCTCCGGGAGGTCATCTTGGACGTTTCGTCATCTGGACTCAGTCCGCATTCGGCAGGCTTGACCCCTTATTCGGGTCATGGAAGACACCATCAAAACAAAAGAAGAACTTCAACCTGCCCCAACCGAAGATGGCCAACACTGACCTCACACGTCTTCTCAAGTCTGATGAGATCAGGAAGGTCCTCCGTGCTCCCAACAAACGCGTGATCCGTGCTACACGCAAATTGAACCCGCTCACTAACAACAAGGCGATGCTGAAACTCAATCCTTACGCGGCCGTGCTGAAGAGGAAAGCTATCTTAGAGCTGCGCAGAAGGAAGAACTTGAAGGCTCTTGCTGATGCCGAGAAGAGTGGATTGAAGCTGTCTAAGCGAAACCCCGCTATGAAGGCTGAGAAACTACGCGAGAGGAGACGCAAGAACATCAAGGAGGCTCTCGCCAAGAAACCCAAGAAGCCGGTTGCTAAGAAGACCCCGCCTCCTCCCAAGAAGAAGGCAGATAAGAAGCCGAAAGCTGAAAAGGCCGTGAAACCCAAGGCCGATAAGCCTAAAGCTGATGATAAGCCTAAGGCGTAA

Protein

MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAALAAAVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVELLNVNKLNLLKLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRKNIKEALAKKPKKPVAKKTPPPPKKKADKKPKAEKAVKPKADKPKADDKPKA

Similarity

Belongs to the universal ribosomal protein uL4 family.

Keywords

3D-structure   Complete proteome   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  60S ribosomal protein L4

Uniprot

Q5UAT7   H9IX17   G4XH78   I4DM12   B1Q0X3   D1LYL0   + More
I4DIF6   G0ZEG7   A0A212EPB6   A0A0T6B0B1   A0A1Y1NKI9   A0A146L1S4   Q4GXN5   A0A154P3W7   Q56FG7   V5I8L6   K7IMH7   Q4GXN4   J3JTA0   A0A1W4X592   N6SY95   A0A088AFB1   A0A0C9QQT0   D6WNC6   A0A0K8TPN9   A0A2A3EUD6   A0A348G676   A0A026WTR9   A0A0J7KTG8   A0A0X7YCE9   E2BKZ0   A0A158NZG1   E2AB19   A0A131XR05   A0A224Z3F9   A0A131YPI6   A0A3L8DG95   A0A151XER8   A0A195G008   B4JEQ6   E9J724   A0A0L0CGP4   A0A023GM69   A0A195CRM9   A0A023FJS3   A0A023GK63   G3MHF7   A0A023FK19   A0A023FTB1   A0A336LH87   A0A0C9RV84   A0A2J7Q4M1   A0A2J7Q4M3   A0A1J1HKW5   A0A0M8ZW43   A0A336LQ18   A0A1B6JDE4   A0A1B6LV75   B7PSE0   A0A0K8RMJ6   A0A1B0CHB7   A0A067RF58   A0A1B6LPT0   A0A1D1XIR1   A0A131Y119   B3M017   A0A1B6DYP3   B4NJQ3   A0A3B0K6Y5   A0A1L8EF74   A0A1E1XAH2   A0A1L8EET2   B4QY54   A0A1L8EF28   A0A1W7R9P8   B4G2B5   B4M6G6   A0A1L8EEY9   A0A240SX64   D3TLM1   A0A1W4UCC3   P09180   B4PR84   B3P5W0   B4K9Q9   A0A1A9WY39   U5EXY7   A0A1D2NJD8   A0A240SWK5   A0A034VN45   A0A0K8UQB0   A0A1I8NLP8   A0A1B0BEI8   Q29AF5   A0A0A9Z2L9   E0VUQ3   A0A2I9LPM2   A0A240SW78   A0A0N8EBG3   A0A182IS08  

Pubmed

19121390    22651552    18839417    22118469    28004739    26823975    + More
20075255    22516182    23537049    18362917    19820115    26369729    24508170    20798317    21347285    28049606    28797301    26830274    30249741    17994087    21282665    26108605    22216098    26131772    24845553    28503490    20353571    2492096    10731132    12537572    12537569    3133637    23636399    17550304    27289101    25348373    15632085    25401762    20566863    29248469   

EMBL

AY769271    AAV34813.1    BABH01021240    JF811433    AEP43782.1    AK402330    + More
BAM18952.1    EU523116    NWSH01000236    ACB12079.1    PCG78125.1    GU084284    ACY95317.1    AK401074    BAM17696.1    JF265045    AEL28876.1    AGBW02013491    OWR43340.1    LJIG01016387    KRT80754.1    GEZM01001949    JAV97440.1    GDHC01016108    JAQ02521.1    AM048988    CAJ17227.1    KQ434803    KZC05928.1    AY961533    AAX62435.1    GALX01004470    JAB63996.1    AM048989    CAJ17228.1    BT126456    AEE61420.1    APGK01052202    KB741211    KB632263    ENN72764.1    ERL90898.1    GBYB01006089    JAG75856.1    KQ971343    EFA03236.1    GDAI01001264    JAI16339.1    KZ288185    PBC34892.1    FX985618    BBF97949.1    KK107109    EZA59358.1    LBMM01003369    KMQ93601.1    KC507326    AHB12449.1    GL448858    EFN83644.1    ADTU01004588    GL438234    EFN69295.1    GEFH01000600    JAP67981.1    GFPF01009394    MAA20540.1    GEDV01007680    JAP80877.1    QOIP01000008    RLU19465.1    KQ982226    KYQ58869.1    KQ981169    KYN45379.1    CH916369    EDV93187.1    GL768421    EFZ11342.1    JRES01000409    KNC31593.1    GBBM01001155    JAC34263.1    KQ977349    KYN03398.1    GBBK01002496    JAC21986.1    GBBM01001096    JAC34322.1    JO841308    AEO32925.1    GBBK01002540    JAC21942.1    GBBL01002651    JAC24669.1    UFQS01003877    UFQT01003877    SSX16001.1    SSX35335.1    GBZX01001339    JAG91401.1    NEVH01018378    PNF23532.1    PNF23531.1    CVRI01000006    CRK88044.1    KQ435821    KOX72330.1    UFQT01000100    SSX19925.1    GECU01010456    JAS97250.1    GEBQ01012423    JAT27554.1    ABJB010245095    ABJB010835855    DS778096    EEC09512.1    GADI01001523    JAA72285.1    AJWK01012192    KK852672    KDR18758.1    GEBQ01014368    JAT25609.1    GDJX01025663    JAT42273.1    GEFM01003219    JAP72577.1    CH902617    EDV44207.1    GEDC01006498    JAS30800.1    CH964272    EDW85015.2    OUUW01000005    SPP81396.1    GFDG01001616    JAV17183.1    GFAC01002944    JAT96244.1    GFDG01001591    JAV17208.1    CM000364    EDX14702.1    GFDG01001554    JAV17245.1    GFAH01000516    JAV47873.1    CH479179    EDW23960.1    CH940652    EDW59242.1    GFDG01001553    JAV17246.1    CCAG010014727    EZ422323    ADD18599.1    X13382    AE014297    AY069485    X06881    CM000160    EDW98448.1    CH954182    EDV53360.1    CH933806    EDW14534.1    GANO01000700    JAB59171.1    LJIJ01000024    ODN05349.1    GAKP01015400    GAKP01015398    JAC43552.1    GDHF01023573    JAI28741.1    JXJN01012899    CM000070    EAL27395.1    GBHO01004895    GBRD01001411    GBRD01001409    GDHC01004338    JAG38709.1    JAG64410.1    JAQ14291.1    DS235787    EEB17109.1    GFWZ01000346    MBW20336.1    GDIQ01043164    JAN51573.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000076502    UP000002358    UP000192223    + More
UP000019118    UP000030742    UP000005203    UP000007266    UP000242457    UP000053097    UP000036403    UP000008237    UP000005205    UP000000311    UP000279307    UP000075809    UP000078541    UP000001070    UP000037069    UP000078542    UP000235965    UP000183832    UP000053105    UP000001555    UP000092461    UP000027135    UP000007801    UP000007798    UP000268350    UP000000304    UP000008744    UP000008792    UP000092445    UP000092444    UP000192221    UP000000803    UP000002282    UP000008711    UP000009192    UP000091820    UP000094527    UP000092443    UP000095300    UP000092460    UP000001819    UP000009046    UP000078200    UP000075880   

PRIDE

Q5UAT7    H9IX17    A0A088AFB1    B7PSE0    P09180   

Pfam

PF00573   Ribosomal_L4        + More
PF14374   Ribos_L4_asso_C
PF00814   Peptidase_M22

Interpro

IPR023574   Ribosomal_L4_dom_sf        + More
IPR013000   Ribosomal_L4/L1e_euk/arc_CS       
IPR025755   Ribos_L4_C_dom       
IPR002136   Ribosomal_L4/L1e       
IPR003124   WH2_dom       
IPR017861   KAE1/TsaD       
IPR000905   Gcp-like_dom       

SUPFAM

SSF52166   SSF52166       

Gene 3D

3.40.1370.10    

ProteinModelPortal

Q5UAT7   H9IX17   G4XH78   I4DM12   B1Q0X3   D1LYL0   + More
I4DIF6   G0ZEG7   A0A212EPB6   A0A0T6B0B1   A0A1Y1NKI9   A0A146L1S4   Q4GXN5   A0A154P3W7   Q56FG7   V5I8L6   K7IMH7   Q4GXN4   J3JTA0   A0A1W4X592   N6SY95   A0A088AFB1   A0A0C9QQT0   D6WNC6   A0A0K8TPN9   A0A2A3EUD6   A0A348G676   A0A026WTR9   A0A0J7KTG8   A0A0X7YCE9   E2BKZ0   A0A158NZG1   E2AB19   A0A131XR05   A0A224Z3F9   A0A131YPI6   A0A3L8DG95   A0A151XER8   A0A195G008   B4JEQ6   E9J724   A0A0L0CGP4   A0A023GM69   A0A195CRM9   A0A023FJS3   A0A023GK63   G3MHF7   A0A023FK19   A0A023FTB1   A0A336LH87   A0A0C9RV84   A0A2J7Q4M1   A0A2J7Q4M3   A0A1J1HKW5   A0A0M8ZW43   A0A336LQ18   A0A1B6JDE4   A0A1B6LV75   B7PSE0   A0A0K8RMJ6   A0A1B0CHB7   A0A067RF58   A0A1B6LPT0   A0A1D1XIR1   A0A131Y119   B3M017   A0A1B6DYP3   B4NJQ3   A0A3B0K6Y5   A0A1L8EF74   A0A1E1XAH2   A0A1L8EET2   B4QY54   A0A1L8EF28   A0A1W7R9P8   B4G2B5   B4M6G6   A0A1L8EEY9   A0A240SX64   D3TLM1   A0A1W4UCC3   P09180   B4PR84   B3P5W0   B4K9Q9   A0A1A9WY39   U5EXY7   A0A1D2NJD8   A0A240SWK5   A0A034VN45   A0A0K8UQB0   A0A1I8NLP8   A0A1B0BEI8   Q29AF5   A0A0A9Z2L9   E0VUQ3   A0A2I9LPM2   A0A240SW78   A0A0N8EBG3   A0A182IS08  

PDB

4V6W     E-value=4.57435e-119,     Score=1095

KEGG

692659    K02930 large subunit ribosomal protein L4e | (RefSeq) RpL4; ribosomal protein L4

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0005840   GO:0006412   GO:0003779   GO:0022625   GO:0016021   GO:0002181   GO:0022626   GO:0016020   GO:0022857   GO:0004559   GO:0006013   GO:0015923   GO:0005634   GO:0006260  

Length:

434

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.37446

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06594

outside

1  -  434

 

 

Pi

232.646108

Theta

165.730313

Tajima's D

0.705916

CLR

0.277659

CSRT

0.575621218939053

Interpretation

Uncertain