Silkworm Genome Informatics Database

Gene

KWMTBOMO06227 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001644

Annotation

PREDICTED:_la-related_protein_1_[Bombyx_mori]

Location

Bomo_Chr11(-):2889329-2921042 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.994

CDS

ATGACGGCCGGCGTCACGGCCAGGAGGAAGTCGAGGGCGAGGAGGAGCTGGGCCAAAGTGGAGAACGACGCGCAGGCGTCAGACTTCACGGATATCGGCGACTGGCCGACGCTCGGGGCAGCTGTGGCAGCCTCGAGATGTCACTCGACCCCGCCCCACGACACAGACTCCACGCATCATAATGGCACATTGGAACAAGAACGGAAGCCCCTCGAGGAGCACCATCAGCATCCCCAGAACCAGGCGAAGGTCGACAAGCCGGAGCCGCTTCAGAACCATCACGGTTCGAATGACAAACATCAGGATAAAAAGAACTCGGGCGGCAACAAATCCGGCAAGCACAAGTGGGTGCCTCTGGACATCGAAGTGAAGGGCCCCAGGCAGAACAAGCACGGTCCTCCGCATGGTGCGAGGCCTGAGAACGACACGGTTTCCCTGAACGGCGAGGAGCGTCCCCGCGGGGCACGCTCGGTGCGCGGCGGGGGGCGAGGTCGCGGCGCCCGGCGCCCCGGCCCGCGCCCCGTGTCCGCACTGTCCGCGCTCGCCGCCCCGCCGCACGCCGTGTTCCACCACCCTCACGACTTCGGCCACCATCCGGAACTGTCACAGCTGCGGATACCACAAGCGGGTTTGGCACAGGGTCTAGTGATGCAGTACCCCGGCTTGGCGCTGGGAGGTCTCGGAGCCGGTCTCGCCCAGGCTTATTACTACGGAGCGGCCGCCGCGACCGCTGCCCCATACGGACTAGGTCTGGACCAAGTAACGTTGAAGGATTTGATCAAGAAACAAATCGAATACTACTTCAGTCCGGATAACCTGGCCCGCGACTTCTTCCTGAGACGGAAGATGTCCCCGGACGGCACCATACCGGTGACGCTGATCGCCTCGTTCCACCGCGTCCGGGCGCTCACCTCAGACGTGCAGCTGGTCCTCGACGCGATCCGGGACTCGGAGCGGCTGGAGCTCATCAGCGGCTTCAAGGTGCGGACCGTGTTCGAGCCGACCAAGTGGCCGATACTGGACGTGGCGACCAGCTCCGACGAGGGCGAGAGGCCGGAGAGACCGAAGCCGGCCGAGCCCGAAAAGGCCGGGGCGGAGAAGACGAATCCCGAAAACAACGAAAAGGAACAGGCCAAGACAAACGCCGATGATGTCGTTCAAGTTAAGGAGGACATTGTCGAGGCTCCCAGTATAGAGCGGAAAGATGAGAAGGTTGAACCCGAGACGATAAAAGAACAACCGAATGATGTGAACAACTCCGACGTGGTCGTGGACACTGCGAAGGTCGTAGTGCCTGAACACGTGGAAGATGTAAAGGTGGAAGATGACAAGGAAGTGCAGACCTCTCCGCCGCCGGAGCAGAAGGCGGACAGCGCTCCTGACACTCAGGAAGACAAGAAGCTGGATTCCAGTGACGATCCCCCGCTGCAGACCGAGGGGACCGAGGAGAGGCCGGGCGAGAAACGTCGCAAGAAGCAGATGGTGGGCATCTTCCCGCTGGCGACCATGGGCGGGCCGCTGGTGGCGCCCGTGTCCGGCCTGCTGCGAGCCGTGCCGCCCCCACCCCTGCCGCGGATGTTCCGCACGAGCAGGCCCGGCCCGACGCCGCCGCACGACTCGCTCGACCCGAACGTGCCCGAGTTCGTGCCGCAGGCGAGGCGACAAGAGGACAACGGCAGCGAGCCGGGGGAGCAGCCGGGGGGCCGCCCGCGCTCCGCCGCGCACAGCCCGCAGGCCGAGGGCGGCGCCGCCGACTGGACCGAGGTGAAACGTCGAACGAAAGCCGGCTCCCGCGAGCGCTCCGCCGCCGGGGGGCCCGCGACGGACGGGGAAGTCCCCGACGAGGAGCCTCGCGAGGAGCTGCACTTCCAACTGGACGAAGAACTCGACTTACCTCCACCGAGACACAACACCTTCACCGATGCTTGGTCCGACGAGGAGTCGGACGCGGAGTTCACGGACGGCGATGTGGGGCGGCTGCTGATCGTGACGCAGACGACGCGTGCCGCCAAGCACGACGGACACGACCGCCAGGGGGACTGGACCAGCCGCACCAAGATCACGCAGGACCTCGAGCAGGTCATTACCGACGGACTGCGTCGTTACGAAGAGGACCTGTGGAACGACACAGAATATACTTCATCGTACGGTAGCGGCCGTGAGTACCGCACTGTGAGCCTGATCAGCCGTGAGCAGTTCGAGGCAGCCGTGCCAAACGAGCGGCATAGGAACCCCGCCCGCCCCCCGCCGCCCCCCGCGCACCCCCACCACCAGGTGGATCAGCAGCCGGCCGGTGGCGGCAAGGCGTCTCGTCCCCGGCGAACCGCGCGCTTCTACGCGGCCAGCAAGGACCCACACGCTACCGATGTCATCTGCAGCAGGAAGCACAAGACCAGATACAGCCTCAACCCGCCCGTGGAGCACCACGTCGGCTGGATCATGGACGTGCGCGAACACCGACCCAGGACTCAAAGCACCGGGTCGTCGCTGGGCGCGTCGCCGACGCTGGGCTCGTCGTGCGGCTCCATGCCGCAGTCCCTGCCGACCTTCCACCACCCCAGCCACGGTCTGCTGCGGGAGAACCACTTCACGCAACAGGCGTACCACAAGTACCACTCGCGCTGTCTCAAAGAACGAAAGAAGCTCGGCATCGGGCAGTCGCAGGAGATGAACACGCTCTTCCGTTTCTGGTCCTTCTTCCTGAGGGACCACTTCAACAGGACCATGTACAACGAGTTCAGGTCGTTGGCCATCGAGGACGCGCAGGCCGGCTTCCGCTACGGGCTCGAGTGCCTGTTCCGCTTCTACTCGTACGGGCTCGAGAGGAAGTTCCGGCCGGAGCTCTACCAGCACTTCCAGACGGAGACGATGGCGGACTACGAGAAAGGTCAGCTTTACGGCCTGGAAAAGTTCTGGGCGTTTTTGAAGTACTACAAGCACGCGAGCGCTTTGCAAGTCGAGCCTAAGCTCCAGGGATACTTGTCGAAGTTCAAAAGCATTGAAGACTTTCGTGTGCTCGAGGCGCGGCGCGGCGTGCGGGGGCGGGGCGGCGTGCGGCGCGGCGGCGTGCAGCGCCAGCAAGTCGCGAGGTCGCGCTGGTTCGTGCGGCGCCTCCGCTGGCAGGACGCGTGCGAATCAAAAGCAGAAACCGGAGACCGCCGTCCCGACCGAGGTCAAGTCTATAGCAGCTAA

Protein

MTAGVTARRKSRARRSWAKVENDAQASDFTDIGDWPTLGAAVAASRCHSTPPHDTDSTHHNGTLEQERKPLEEHHQHPQNQAKVDKPEPLQNHHGSNDKHQDKKNSGGNKSGKHKWVPLDIEVKGPRQNKHGPPHGARPENDTVSLNGEERPRGARSVRGGGRGRGARRPGPRPVSALSALAAPPHAVFHHPHDFGHHPELSQLRIPQAGLAQGLVMQYPGLALGGLGAGLAQAYYYGAAAATAAPYGLGLDQVTLKDLIKKQIEYYFSPDNLARDFFLRRKMSPDGTIPVTLIASFHRVRALTSDVQLVLDAIRDSERLELISGFKVRTVFEPTKWPILDVATSSDEGERPERPKPAEPEKAGAEKTNPENNEKEQAKTNADDVVQVKEDIVEAPSIERKDEKVEPETIKEQPNDVNNSDVVVDTAKVVVPEHVEDVKVEDDKEVQTSPPPEQKADSAPDTQEDKKLDSSDDPPLQTEGTEERPGEKRRKKQMVGIFPLATMGGPLVAPVSGLLRAVPPPPLPRMFRTSRPGPTPPHDSLDPNVPEFVPQARRQEDNGSEPGEQPGGRPRSAAHSPQAEGGAADWTEVKRRTKAGSRERSAAGGPATDGEVPDEEPREELHFQLDEELDLPPPRHNTFTDAWSDEESDAEFTDGDVGRLLIVTQTTRAAKHDGHDRQGDWTSRTKITQDLEQVITDGLRRYEEDLWNDTEYTSSYGSGREYRTVSLISREQFEAAVPNERHRNPARPPPPPAHPHHQVDQQPAGGGKASRPRRTARFYAASKDPHATDVICSRKHKTRYSLNPPVEHHVGWIMDVREHRPRTQSTGSSLGASPTLGSSCGSMPQSLPTFHHPSHGLLRENHFTQQAYHKYHSRCLKERKKLGIGQSQEMNTLFRFWSFFLRDHFNRTMYNEFRSLAIEDAQAGFRYGLECLFRFYSYGLERKFRPELYQHFQTETMADYEKGQLYGLEKFWAFLKYYKHASALQVEPKLQGYLSKFKSIEDFRVLEARRGVRGRGGVRRGGVQRQQVARSRWFVRRLRWQDACESKAETGDRRPDRGQVYSS

Uniprot

A0A2W1BS31 A0A2H1VWC5 A0A0N1IPU5 A0A194QAP0

Pubmed

28756777 26354079

EMBL

KZ149995 PZC75466.1 ODYU01004531 SOQ44514.1 KQ460038 KPJ18389.1 + More
KQ459463 KPJ00486.1

Proteomes

UP000053240 UP000053268

Pfam

PF05383   La        + More
PF00883   Peptidase_M17
PF01400   Astacin

Interpro

IPR006607   DM15        + More
IPR036388   WH-like_DNA-bd_sf
IPR036390   WH_DNA-bd_sf
IPR006630   La_HTH
IPR011356   Leucine_aapep/pepB
IPR024079   MetalloPept_cat_dom_sf
IPR000819   Peptidase_M17_C
IPR001506   Peptidase_M12A

SUPFAM

SSF46785 SSF46785

Gene 3D

1.10.10.10 3.40.390.10

ProteinModelPortal

A0A2W1BS31 A0A2H1VWC5 A0A0N1IPU5 A0A194QAP0

PDB

5V87 E-value=3.85535e-62, Score=608

KEGG

101744205 K18757 la-related protein 1 | (RefSeq) la-related protein 1

GO

GO:0003723 GO:0008235 GO:0005737 GO:0004222 GO:0030145 GO:0004177

Length:

1063

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

13.88886

Exp number, first 60 AAs:

0

Total prob of N-in:

0.24248

outside

1 - 1063

Pi

289.278852

Theta

176.417394

Tajima's D

1.578617

CLR

0.391293

CSRT

0.80385980700965

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
27530593	KNVESPAAVSDVETADVKK	100.00	1e-11
27530593	RGEVAHYSFNSDDENVEPAFVLNRR	100.00	1e-11
26280517	TSDVPAPNAYDPHIIDGTPK	96.00	2e-10
28467696	TSQSAPATGINTISGSSSTSR	96.00	2e-10
26280517	CHACIGGTNVR	95.45	7e-09
28556443	LGIGQSQEMNTLFR	100.00	1e-08
28556443	PGPTPPHDSLDPNVPEFVPQAR	100.00	3e-07
26822097	EDIVEAPSIER	100.00	6e-06
26280517	SAAEFAADVR	100.00	6e-06
28556443	WVPLDIEVK	100.00	6e-06
28556443	ITQDLEQVITDGLR	100.00	0.003
28556443	ALTSDVQLVLDAIR	100.00	0.018

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics