SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06216  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001793
Annotation
PREDICTED:_sericin_1-like_isoform_X3_[Bombyx_mori]
Location
Bomo_Chr11(+):2534733-2564618      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.426
 

Sequence

CDS
ATGCGTTTCGTTCTGTGCTGCACTTTGATTGCGTTGGCTGCGCTCAGCGTAAAAGCTTTCGGTCACCACCCCGGCAATCGAGATACAGTCGAAGTCAAAAACCGAAAGTACAATGCAGCTAGCAGTGAAAGCTCTTACCTCAACAAAGATAATGATTCGATAAGTGCCGGAGCGCACCGGGCCAAGTCCGTAGAGCAGAGTCAGGATAAAAGCAAATATACATCTGGTCCAGAAGGCGTGTCGTACAGCGGAAGGTCTCAGAACTATAAAGATTCCAAGCAAGCTTATGCCGATTATCACAGCGATCCGAACGGCGGATCTGCTTCTGCCGGACAATCTCGCGACAGCAGCCTGAGAGAGAGAAACGTACATTACGTCTCTGACGGTGAAGCAGTGGCCGCTTCCAGTGACGCTCGCGATGAAAACCGATCCGCCCAACAGAATGCTCAGGCCAATTGGAACGCTGACGGTTCTTACGGAGTTAGCGCTGATCGAAGTGGTTCCGCTAGTTCTAGACGCCGCCAAGCCAATTACTACTCCGATAAAGACATCACTGCTGCTTCTAAAGACGATTCACGTGCAGATTCTTCTAGGAGAAGCAATGCCTATTACAACAGAGATAGTGACGGCTCAGAATCCGCTGGATTAAGTGACCGTAGAGCTTCTTCCTCGAAAAATGATAATGTATTTGTTTACCGCACTAAGGATTCTATTGGAGGACAAGCGAAATCTTCAAGATCATCTCATTCACAAGAGAGCGACGCTTATTATAACTCCAGTCCGGATGGAAGCTACAACGCTGGTACGCGAGATAGTTCAATTTCTAACAAAAAGAAGGCGAGCTCTACCATCTACGCTGATAAAGATCAAATACGCGCCGCGAATGATCGTTATTCTTCGAAACAGTTAAAACAGAGCAGCGCTCAAATCTCCTCCGGGCCAGAGGGCACCTCTGTAAGCAGTAAGGATAGGCAGTACTCGAACGACAAACGCAGCAAATCTGATGCGTACGTCGGACGGGACGGCACCGTTGCTTACTCAAACAAGGACAGCGAAAAGACCTCACGACAAAGTAATACGAACTATGCCGACCAAAACTCCGTTCGCTCTGACTCTGCCGCTTCGGACCAGACCAGCAACAGTTACGACAAGGGCTACAGTGATAAAAATACAGTTGCCCATAGCTCTGGTAGTAGGGGCAGTCAGAATCAGAAATCGTCGAGCTACCGCGCTGACAAGGACGGTTTTTCCTCCAGTACGAATACTGAAAAATCCAGATTTAGTTCTTCGAATAGCGTCGTAGAAACTTCAGATGGAACTTCTGCTAGTCGCGAATCATCAGCGGAGGATACCAAATCATCCAATAGTAACGTTCAGAGCGATGAAACAGGCGAAGAAGAGGAATTGTTCGATGTTGTATCTTACCAGAAAATTGAAGATGGCAAGCCTGTAATCATAATGAAAGTTATACCAGTCGAGAAATCCGCGTCCCAATCAAGTTCTTCGCGGTCATCTCAGGAGTCTGCAAGCTATAGCAGCAGCAGCAGTTCATCGACAGAAGAATCCTCATCCTCGAGCTCTAGGGCTGCTTCATCAACCGACGCTTCTAGCAACACTGATTCAAACTCAAACAGCGCGGGATCCAGTACATCCGGCGGTAGCAGCACTTATGGATACAGTTCCAACAGTCGTGATGGAAGTGTATCGACCACCGGCAGTTCCAGTAACACTGATTCGAATTCAAACAGCGTTCCAGGAAATCCGGCGGTAGCAGCTCTCATGAAGACAGTTCCAAGAGTCGTGATGGAAGTGTATCATCCACTGGCAGTTCCAGTAACACTGATTCAAACTCAAACAGCGCAGGATCCAGTACATCTGGCGGTAGCAGCACTTATGGATACAGCTCCAACAGTCGTGATGGAAGTGTATCATCCACCGGCAGTTCCAGTTACACTGATTCAAACTCAAACAGCGCAGGATCCAGTACATCGGGCGGTAGCAGCACTTATGGATACAGTTCCAACAGTCATGATGGAAGATCCAGGAAATCCGACGGTAGCAGCTCTCATGAAGACAGTTCCAAGAGTCGTGATGAAAGTGTATCGACCACCGGCAGTTCCAGTAACACTGATTCAAACTCAAGCAGCGCAGGATCCAGTACATCCGGTGGTAGCAGCACTTATGGATACAGCTCCAACAGTGGTGATGGAAGTGTATCATCCACCGGCAGTTCCAGTAACACTGAGTCAAACTCAAACAGCGAAGGATCCAGAACATCTGGCGGTAGCAGCACTTATGGATACAGTTCCAACAGTCGTGATGGAAGTGTATCATCCACCGGCAGTTCCAGTAACACTGATTCAAACTCAAACAGCGCAGGATCCAGTACATCTGGTGGTAGCAGCACTTATGGATACAGTTCCAACAGTCGTGATGAAAGTGTATCATCCACCGGCAGTTCCAGTAACACTGATTCGAATTCAAACAGCCGCAGGATCCAGTACATCTGGCAGTAGCAACACTCATGGTGCCAGCCATGGTTTGGCATCATCTGGCGGTAGTATAGCATCAGCAACTAGTACTCCTGACATACTTACCATAGCACTAAGTGAAGACTCTTCCGAGGTGGATATTGATCTTGGCAATTTAGGCTGGTGGTGGAATTCAGACAATAAGGCACAAAGAGCGGCAGGCGGCGCAACAAAGTCTGAAGCTTCATCATCCACTCAAGCTACTACAGAACCGTTTCGTCCACTGGCAGTACCAGTAACACCGATTCAAGCTCAAAAAGTGCAGGATCCCGTACATCCGGCGGTAGCAGCACTTATGGATATAGCTCCAGCCATCGTGGTGGAAGCGTATCATCCACCGGCAGTTCCAGCAACACTGATTCAAGCACAAAGAATGCAGGATCCAGTACATCCGGCGGTAGCAGCACTTATGGATATAGCTCCAGCCATCGTGGTGGAAGCGTATCATCCACCGGCAGTTCCAGCAACACTGATTCAAGCACAAAGAATGCAGGATCCAGTACATCTGGCGGTAGCAGCACTTATGGATATAGCTCTAGCCATCGTGGTGGAAGTGTATCATCCACCGGCAGTTCCAGCAACACTGATTCAAGCACAAAGAGTGCAGGATCCAGTACATCCGGCGGTAGCAGCACTTACGGATATAGCTCCAGGCATCGTGGATCTAGTACATCCGGCGGTAGCAGCACTTATGGATACAGTTCCAACAGTCGTGATGGAAGTGTATCATCCACCGGCAGTTCCAGTAACACTGATTCAAACTCAAACAGCGCGGGATCCAGTACATCCGGTGGTAGCAGCACTTATGGATACAGTTCCAACAGTCGTGATGGAAGTGTATCATCCACCGGCAGTTCCAGTAACACTGATTCAAACTCAAACAGCGCGGGATCCAGTACATCCGGTGGTAGCAGCACTTATGGATACAGTTCCAACAGTCGTGATGGAAGTGTATCATCCACCGGCAGTTCCAGTAACACTGATGCAAGCACAGACCTTACAGGATCCAGTACATCCGGCGGTAGCAGCACTTATGGATACAGTTCCGACAGTCGTGATGGAAGTGTATCATCCACCGGCAGTTCCAGTAACACTGATGCAAGCACAGACCTGGCAGGATCCAGTACATCTGGCGGTAGCAGCACTTATGGATACAGTTCCGACTGTGGTGATGGAAGTGTATCATCCACCGGCAGTTCCAGTAACACTGATGCAAGCACAGACCTTGCAGGATCCAGTACATCCGGCGGTAGCAGCACTTATGGATACAGTTCCGACAGTCGTGATGGAAGTGTATCATCCACCGGCAGTTCCAGTAACACTGATGCAAGCACAGACCTTGCAGGATCCAGTACATCGGGCGGTAGCAGCACTTATGGATACAGTTCCAACAGTCGTGATGGAAGTGTATCATCCACCGGCAGTTCCAGTAACACTGATGCAAGCACAGACCTTACAGGATCCAGTACATCCGGCGGTAGCAGCACTTATGGATATAGCTCAAGCAATCGTGATGGAAGTGTATTGGCCACTGGCAGTTCCAGTAACACTGATGCAAGCACCACAGAAGAATCCACCACGTCCGCTGGTAGCAGCACTGAAGGATATAGTTCCAGTAGCCATGATGGAAGCGTAA
Protein
MRFVLCCTLIALAALSVKAFGHHPGNRDTVEVKNRKYNAASSESSYLNKDNDSISAGAHRAKSVEQSQDKSKYTSGPEGVSYSGRSQNYKDSKQAYADYHSDPNGGSASAGQSRDSSLRERNVHYVSDGEAVAASSDARDENRSAQQNAQANWNADGSYGVSADRSGSASSRRRQANYYSDKDITAASKDDSRADSSRRSNAYYNRDSDGSESAGLSDRRASSSKNDNVFVYRTKDSIGGQAKSSRSSHSQESDAYYNSSPDGSYNAGTRDSSISNKKKASSTIYADKDQIRAANDRYSSKQLKQSSAQISSGPEGTSVSSKDRQYSNDKRSKSDAYVGRDGTVAYSNKDSEKTSRQSNTNYADQNSVRSDSAASDQTSNSYDKGYSDKNTVAHSSGSRGSQNQKSSSYRADKDGFSSSTNTEKSRFSSSNSVVETSDGTSASRESSAEDTKSSNSNVQSDETGEEEELFDVVSYQKIEDGKPVIIMKVIPVEKSASQSSSSRSSQESASYSSSSSSSTEESSSSSSRAASSTDASSNTDSNSNSAGSSTSGGSSTYGYSSNSRDGSVSTTGSSSNTDSNSNSVPGNPAVAALMKTVPRVVMEVYHPLAVPVTLIQTQTAQDPVHLAVAALMDTAPTVVMEVYHPPAVPVTLIQTQTAQDPVHRAVAALMDTVPTVMMEDPGNPTVAALMKTVPRVVMKVYRPPAVPVTLIQTQAAQDPVHPVVAALMDTAPTVVMEVYHPPAVPVTLSQTQTAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTAAGSSTSGSSNTHGASHGLASSGGSIASATSTPDILTIALSEDSSEVDIDLGNLGWWWNSDNKAQRAAGGATKSEASSSTQATTEPFRPLAVPVTPIQAQKVQDPVHPAVAALMDIAPAIVVEAYHPPAVPATLIQAQRMQDPVHPAVAALMDIAPAIVVEAYHPPAVPATLIQAQRMQDPVHLAVAALMDIALAIVVEVYHPPAVPATLIQAQRVQDPVHPAVAALTDIAPGIVDLVHPAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHLAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHRAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDIAQAIVMEVYWPLAVPVTLMQAPQKNPPRPLVAALKDIVPVAMMEA

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
2AAA     E-value=0.0945448,     Score=88

Ontologies

KEGG
101740082    no KO assigned | (RefSeq) ser1, sericin1B; sericin 1-like
GO

Topology

SignalP
Position:   1 - 19,         Likelihood:  0.995821
 
 
Length:
1388
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.532870000000001
Exp number, first 60 AAs:
0.41654
Total prob of N-in:
0.02046
outside
1  -  1388
 
 

Population Genetic Test Statistics

Pi
25.484731
Theta
203.386352
Tajima's D
0.590859
CLR
0.540146
CSRT
0.534073296335183
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
31250652 FNRKPELYAALLLHTKTLAQCLSAEECKQLVLRLARANYLSYWFTYSNVEPLIKRLKPEERASFKKQVFVNKDVGTIVEEWPYSIPALPTQPSYLNGTHVFDDQEYSQGLCESKLLGIKRLIKKKCAKWSECDIVQCEALKSYLDQLFDEYRFTGFSKTFYEISKRIKSESTYKNREYMMLVLVSKTGGKPECVASLLEL 99.55 0.0
27102218 SEASSSTQATTVSGADDSADSYTWWWNPR 97.22 6e-16
24093152 SSHSQESDAYYNSSPDGSYNAGTR 100.00 4e-14
27102218 RSSSSSSSASSSSSGSNVGGSSQSSGSSTSGSNAR 100.00 4e-14
25860555 INKPQTDIVAFGIWGR 96.97 1e-12
27102218 SSNSNVQSDETGEEEEIFDVVSYQK 96.97 1e-12
27102218 SSHSQESDAYYNSSPDGSYNAGTRDSSISNK 100.00 3e-12
25860555 ITTVFDK 100.00 8e-10
26280517 SSEMNVIIPK 100.00 8e-10
24093152 SSGKDEEYSEQNSSNK 100.00 8e-10
27102218 KASSTIYADKDQIR 100.00 8e-10
25860555 CTRPNEVWDSCPSTCIYENCNDVDNPNVVCDDSCKAEPR 100.00 1e-09
27102218 SSNSNVQSDEKSASQSSSSR 100.00 1e-09
25860555 KIDDIIIETGGRPIR 100.00 9e-09
24093152 SVEGVPIAK 100.00 9e-09
27102218 SATVQSSTTDK 100.00 9e-09
25860555 FISQGR 96.00 1e-08
27102218 VIPVEK 96.00 1e-08
26280517 VIVAANFDEVVFDTTKK 96.00 2e-08
24093152 KYNAASSESSYINK 96.00 2e-08
27102218 YNAASSESSYINKDNDSISAGAHR 96.00 2e-08
28467696 KYNAASSESSYINK 96.00 2e-08
25860555 AWDYVDDTDKSIAIINVQEIIK 100.00 4e-08
26280517 NVFQSFQK 100.00 4e-08
24093152 NVHYVSDGEAVAASSDAR 100.00 4e-08
27102218 NAGSSTSGGSSTYGYSSSHR 100.00 4e-08
25860555 SAQQNAQANWNADGSYGVSADR 100.00 9e-08
24093152 QAWYSEGAGK 100.00 9e-08
27102218 ESSAEDTKSSNSNVQSDEKSASQSSSSR 100.00 9e-08
25860555 RQIVVK 95.83 1e-07
26280517 YMSDEIIQIK 95.83 1e-07
24093152 YNAASSESSYINK 95.83 1e-07
27102218 TSGGSSTYGYSSSHR 95.83 1e-07
28467696 YMYSTAPQPSK 95.83 1e-07
24093152 QIKQSSAQISSGPEGTSVSSK 95.65 2e-07
27102218 DGSVSSTGSSSNTDASTDITGSSTSGGSSTYGYSSSNR 95.65 2e-07
25860555 KNYAEDRFQIWDEIYPIQY 100.00 4e-07
24093152 SDAYVGRDGTVAYSNK 100.00 4e-07
27102218 SNAYYNRDSDGSESAGISDR 100.00 4e-07
25860555 IADNPVDEDKPADISPDAPK 100.00 1e-06
24093152 EREDDGGIEIDTNTIPK 100.00 1e-06
27102218 NVHYVSDGEAVAASSDARDENRSAQQNAQANWNADGSYGVSADR 100.00 1e-06
25860555 CDDQSSCPKPASADCPAPACK 100.00 1e-05
24093152 QSSAQISSGPEGTSVSSK 100.00 1e-05
27102218 QSSAQISSGPEGTSVSSK 100.00 1e-05
25860555 SVVPDNKPFGYPFDRPVIPQYFK 100.00 2e-05
24093152 SKSDAYVGR 100.00 2e-05
27102218 SDAYVGRDGTVAYSNK 100.00 2e-05
25860555 IGKDYDIEMNMDNYTNKK 100.00 5e-05
24093152 SSSSSTYTGSHDDSSEE 100.00 5e-05
27102218 DSDGSESAGISDR 100.00 5e-05
25860555 SDFETGSGAASGAGAGAGSGAGAGSGAGAGSGAGAGSGAGAGGSVSYGAGR 100.00 5e-05
24093152 NVHVATTITCDNGR 100.00 5e-05
27102218 ESSAEDTKSSNSNVQSDEK 100.00 5e-05
25860555 QSIFDIPVRPGAIK 100.00 3e-04
24093152 SDAYVGR 100.00 3e-04
27102218 AAGGATK 100.00 3e-04
25860555 KKDGIPQMSHK 100.00 3e-04
24093152 ESSAEDTKSSNSNVQSDEK 100.00 3e-04
27102218 DNDSISAGAHR 100.00 3e-04
25860555 SKYTSGPEGVSYSGR 100.00 4e-04
24093152 ESNIIR 100.00 4e-04
27102218 SAGSSTSGGSSTYGYSSR 100.00 4e-04
20029844 FENIFDIPYHLR 100.00 5e-04
25860555 TCSDDNVAICIK 100.00 7e-04
26280517 QSIQITEIQTHYDEVQR 100.00 7e-04
24093152 QSPGAITIDK 100.00 7e-04
27102218 KYNAASSESSYINKDNDSISAGAHR 100.00 7e-04
28467696 QSQSIIVSGESGAGK 100.00 7e-04
24093152 QIIYSPQNAK 95.24 0.003
27102218 DSSISNKK 95.24 0.003
25860555 KYNAASSESSYINK 100.00 0.003
24093152 SKTEEDTVVAVIK 100.00 0.003
27102218 RSNAYYNR 100.00 0.003
24093152 DGTVAYSNKDSEK 100.00 0.005
27102218 QANYYSDK 100.00 0.005
20029844 FENIFDIPYHLRKNIGV 100.00 0.005
20029844 FENIFDIPYHLR 100.00 0.005
31250652 KYNAASSESSYLNK 100.00 0.016
25860555 SIAIINVQEIIK 100.00 0.041
26280517 YTITEAIK 100.00 0.041
24093152 YTNPNIR 100.00 0.041
24402669 YTMWVK 100.00 0.041
27102218 SDAASSEDGFWWWNR 100.00 0.041
31250652 LLLPGELAKHAVSEGTK 100.00 0.041
28467696 YTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGK 100.00 0.041
25860555 REGYEYAWSSK 100.00 0.041
24093152 ADISVQVIQISER 100.00 0.041
27102218 SNAYYNR 100.00 0.041
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