SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06208
Pre Gene Modal
BGIBMGA001789
Annotation
PREDICTED:_uncharacterized_protein_LOC106134389_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.639
 

Sequence

CDS
ATGGCTGGAAAAAAGGGTAGGAAAGTTGAAATTTCGGCAACGCTTGTGACTGAAGACATAATCCCGTGTGCTATTTGTGGTAGAGAAGTTGATGATGAAGTTCTATACGGAAAAATATATGCAATCGGAGATATTCAATGTCATTATTTTTGCGTGTTGCTGTCCTGCTGCCTGGTGCAGAAAGGAAGAGAGACAGATGGCCTCTTTGGGTTTCTGTATCGAGATATCTTAGCCGAGATCGAGAGGGCCAAGAAGCATAAATGCTCATACTGCAGTCGTGGTGGTGCCACCCTGGGCTGCTCTGTGAGCCAGTGTCGGAAACAATTCCATTTGCCGTGTGGCAGAGAAAAGAATGCAGTATCATTGTTCTACGGTAATTATAAATCATACTGTCAGCAACATGTCCCGAAGCAGAAGGTACATGACAATGTAATGGAGAGCATTAAGCAGCGGAGAAAAAACAAAATTAAATCCAAAAAAGGTGGAGCAGATGTCTTTGAACATGAAGAATCAAGCTCAGAATCGGAGTTTGTGTGCCTGATATGTTACGAGGAGGTTGAACCTTATCCCGGTGTGCAGACATTTTGGCCGCCCTGCTGTGCCAGGGATGCTTGGTTCCACCGAAGATGTTTACAGCGGATGGCGCTCACTGCCGGCATGCATTATCTGAAATGCCCCTTGTGCAACGACAAGGAGCGCTTCCACGAGGCCGTCATATCGCAGGGATACTACATCCCCGACCAGGATGCCGCGTGGGAGCTCGAGCGGAACGCGTACGCAGAGATATACGAGAGGAATCTAAGATGTGACGCTGAAGTCTGCGAATGTCCTCAGGGCAGAGACCACGATAGCAACGAAGGGGAGTGGGACCTGCAGCCGTGCCTGCTGTGCGGCTGGAGCGGGCGCCACGCGCGCTGCGGGCCCGCGCCCCCCGTGTGCGCGTCCTGCCGCCCCGCCGCGCCCGCCGACCTCACCCGCCTCACCGCGCAGCTGCGACACGTAATGTTGGCCGAAGAATCCAGGAATCGTAGTGAAACTCGGCGACGTCCCGTGATGCCGAGCAGAATGTCCCTACGACGGACGAAAACTGACCCGAAAAATGTTCCTTCTACGTCCACCGCTGAGAATAAACAAGAAGTAACACGACAAGATCTCAATTTAAAGCCTCCGAGGAAGCCACAGTATTGTCTCATAAAGCCTACAGTGTTGAAAAACATTGAACAGAATTTGTTATCGCCCATAAAATTATTAGAAAAGGGCGTTCAAGAGAAAATTAACAGTGAAGAAATAGACAATGTTATAATCGATGAGAAAATATTAGAAGAGGTCCGAGAAAAGTTCCGAAAACCTAAACCCTTGTGTGTTAAAAGGAAAATTGTCGATGAAATTTTACAAGGGCTGTTCGATACCGTTCTGAAAGAATCGAAACAGAAGGAGATAATCAAGAAATGGTGCTCCCCTAAAAAGCGCGAAATTAAGGAGGAAACAGAGCCCCAGGATATCATATCTGAAGACACAGCGGTCGCTCGGAACCCCTCCACGCCAGTTAAAGTCGAGAACCAAAATGAATCGAGCAACGATTCATCTAGTACTTTCCAACTGCCACCGGAGTTCGTCGCCGACGACAGCGATCACTTCTCGCCGCAGAAACTAAAGAAACTAGACATTCAAAACAATTCCAGCTTAGAGATATTCGAGAATAACGAGATTATTAACATAGACGTTAAGAAAATGGACACTCAGTGTGACCGCAGTGAGGGTGTCGATTTAAAGACTCCGGTGAAAGTTAAGAAGTGCGCTTTCAAGTTCAGCCCGTTGGATAAGGAGACGCTAAGTGACGAAAACGTCGGCATGGACGTCGAGAGCTTCAAGAATTGCTACCTGAACGAGGTGGACAGGCATTTTGTGAACAACGTCCCGGGTGAACACGGGAAGAAGAAGTCTAGAAAACGGAAACTGAACTCGAAAGCGAGAATCGATAAGAAAAAAAAGAGGGATCATAAGGAGTTGAACAAGTCGAAGGTGTACCGTAAGAACGAGAGGCAGAAGATGAAGATTAGATTCAAAACTCGCATAAAACTGAAGGTATGCGAGAGCAAGGATAAAGATTTGAAACAGTACGTTTTGTCGAACGTGAATAATGTTGTTGTGAGACCGCAAAAAGAGGTTGGACCGATTAAAAGGAAATATAACAAGCAGGAGAAGTCATCGGATAATCTAGTTCAGACATCGATCCAGAAGTTTTTCGCTGTGAAAAATTGTAAAACTAAATAG
Protein
MAGKKGRKVEISATLVTEDIIPCAICGREVDDEVLYGKIYAIGDIQCHYFCVLLSCCLVQKGRETDGLFGFLYRDILAEIERAKKHKCSYCSRGGATLGCSVSQCRKQFHLPCGREKNAVSLFYGNYKSYCQQHVPKQKVHDNVMESIKQRRKNKIKSKKGGADVFEHEESSSESEFVCLICYEEVEPYPGVQTFWPPCCARDAWFHRRCLQRMALTAGMHYLKCPLCNDKERFHEAVISQGYYIPDQDAAWELERNAYAEIYERNLRCDAEVCECPQGRDHDSNEGEWDLQPCLLCGWSGRHARCGPAPPVCASCRPAAPADLTRLTAQLRHVMLAEESRNRSETRRRPVMPSRMSLRRTKTDPKNVPSTSTAENKQEVTRQDLNLKPPRKPQYCLIKPTVLKNIEQNLLSPIKLLEKGVQEKINSEEIDNVIIDEKILEEVREKFRKPKPLCVKRKIVDEILQGLFDTVLKESKQKEIIKKWCSPKKREIKEETEPQDIISEDTAVARNPSTPVKVENQNESSNDSSSTFQLPPEFVADDSDHFSPQKLKKLDIQNNSSLEIFENNEIINIDVKKMDTQCDRSEGVDLKTPVKVKKCAFKFSPLDKETLSDENVGMDVESFKNCYLNEVDRHFVNNVPGEHGKKKSRKRKLNSKARIDKKKKRDHKELNKSKVYRKNERQKMKIRFKTRIKLKVCESKDKDLKQYVLSNVNNVVVRPQKEVGPIKRKYNKQEKSSDNLVQTSIQKFFAVKNCKTK

Summary

Interpro
IPR042013   PHF7/G2E3_ePHD        + More
IPR034732   EPHD       
IPR011016   Znf_RING-CH       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR011011   Znf_FYVE_PHD       
SUPFAM
SSF57903   SSF57903       
Gene 3D
PDB
4NN2     E-value=1.29309e-10,     Score=162

Ontologies

Topology

Length:
757
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01934
Exp number, first 60 AAs:
0.01792
Total prob of N-in:
0.00144
outside
1  -  757
 
 

Population Genetic Test Statistics

Pi
218.047719
Theta
181.358927
Tajima's D
1.118222
CLR
0.203849
CSRT
0.690165491725414
Interpretation
Uncertain
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