SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06205  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA001787
Annotation
PREDICTED:_uncharacterized_protein_LOC106134402_[Amyelois_transitella]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.832
 

Sequence

CDS
ATGGGTTCAAAGATACCAGGAAAGTTGAGAAGTCAACGGTTGACGTGTAAATGTGATACTTGTGCTCTAGGATTCAAAAATGTGCAAGCGTTACGTTCGCACCAAGCCGTTGCCCATCCGCTGAAGAAAAGGATTGCATACCGACCTAAAACCGAAGTTATAGCCAAAAGGAAGCTTATACCCCATAAAAAGGTAATAAAAGTGGCCCATAAAATGAACAAAACATCCGAAAATGCTTCGACAAAAAAATCACAGCCACACAATTTATTAAGAAAATACAACACTAAAACGCCAATACCTAGTGAAGACGGGAAACAATCCGAATTTGAGTGCCCGGTTTGTTCTAAAATATTCAAGGTTTACTCCTGGGCTTGGAAACACATCCAGAAATATCATTGCATTGACGAGAAAGGGAACCCTGTTTTACCAACATCGAAAGATATAATCAAGCCAGTTCGTATAGAACGTTGCATCGCCTGTAATGTATTAATAAAGTCCGATGATCATACATGTGGTATATCATTCTCTAACGTTCTGAAGAGCCAGTACTCTTGTCTCGGTTGCAATCAGCAGTTCAATACTTTACATTTGTACGAACTACACATAGCAGGACTTCACAGTGAAGGAGCTGAGAACCTGTTCTTTCCTGATGAGGCTGCGTTCTCGGCGTGGCGACAGGACACGGAGAAACGCTGCGATATAAAATACACGACCCTAAGCAAAATTGATAATATGCAAATATATCACTGCAGTCACATGAAATGCGACAGCTCTACGGCCAGCATGTGCCCGTCTAGCTTCACGAAGCAAGAGTTCAGCAAAGGCATACAGGTCGTGTACTATAAAGCTCATTACGGGCACATAATCGATGAATACACCCTCCCCGAGGAGTTCAAGAAGTACTCAATAAGCTCACTGTTGAGAGATACGGATTGTTACACCGTGCTGAGCGTCGACTGTGACTCGGACGACCTCAGCGTGCAATTCAAGAGGTTAATGGACACTATTTTGGGTAAATCGTTGCATGTTAAGGAGAACGTATTGAAATTGTTGTACGGTAAAGCACTGGAGATGGCTTCGCTGTTGAACGATGAGGCTGGCTGTAAAATTGAGTGTCAGAATGGTAAGGAGCTCGCTAAAAAGACATCCACCGATGACATTGTCGAGGACGAATCTAAACTTGACACGGAAATGAAAACAAAAGTGCCCGTTAAGACTTACAGCAATACGAGGAAGAACGTGAAGTTTGAGGACAACAAAATTGGGTCCCCGAAGTTCGGGTCGCCCGCGTCGCTGACGTCATTCAATGATTCGTACCGGCACTTCGTCGAGGACACCCTGGGCGCGGTCGACGAGAAAATTAAAAAGAAAAAAATGATCGTTAAAACCAGAATAGGGCAGTTCAAGCCCACCTCACCGACAAACGACAGGGCGACAATAAAAAAATCGCCCAAGTCTTCAACCAAAGTTAAAAGTAGCCTAAGATTGAAACGCGACTTCGAATACGAAGTCATAGAAAGGGACAAAGAATGCAACATTATGGTTATAAAAATTTAA
Protein
MGSKIPGKLRSQRLTCKCDTCALGFKNVQALRSHQAVAHPLKKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYHCIDEKGNPVLPTSKDIIKPVRIERCIACNVLIKSDDHTCGISFSNVLKSQYSCLGCNQQFNTLHLYELHIAGLHSEGAENLFFPDEAAFSAWRQDTEKRCDIKYTTLSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKGIQVVYYKAHYGHIIDEYTLPEEFKKYSISSLLRDTDCYTVLSVDCDSDDLSVQFKRLMDTILGKSLHVKENVLKLLYGKALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYSNTRKNVKFEDNKIGSPKFGSPASLTSFNDSYRHFVEDTLGAVDEKIKKKKMIVKTRIGQFKPTSPTNDRATIKKSPKSSTKVKSSLRLKRDFEYEVIERDKECNIMVIKI

Summary

Pfam
PF05485   THAP
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR006612   THAP_Znf       
IPR038441   THAP_Znf_sf       
SUPFAM
SSF57667   SSF57667       
Gene 3D

Ontologies

Topology

Length:
518
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00159
outside
1  -  518
 
 

Population Genetic Test Statistics

Pi
190.190795
Theta
171.73217
Tajima's D
-0.941784
CLR
127.160169
CSRT
0.150242487875606
Interpretation
Uncertain
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