SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06204
Pre Gene Modal
BGIBMGA001655
Annotation
Sorting_nexin-16_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 4.642
 

Sequence

CDS
ATGGACATAGTGCAAAACATCAACCTTCAAAGTCGCGACGCAATGAACAACGACGTATCGTCCGCATCGAGCGAAGACAACACCACGTTCGGCAAGATCAGGCGTTACTACAAGAACCGACGGGACTCGACTTCCGACAGCGAGATGCCAGTTCGTCCTCAAAGAATGCACAAGAGCATGCATAACTTGCACGAGAACCAGAGGAACGATTACACCCGAAGCCTGTCTTCGATACAGAACAGCATCAGCAACATCGACTTGAGCCTCCACCGGGCCGAGATCAAGAAGTTCGATAAGCTCCAGATTCCCATTGTCGGCTACGAAGTGATGGAGGAGAGGGCCAGGTTCACGATATACAAGCTCAAAGTCGAGGACGACAAACGCGATCAATCGTGGTTAGTTTTCAGAAGGTACACAGACTTCGTCAGGCTGTACACTAGATTGAAATCGGAGCAGCCCAATATCGAACTGCCTCTTCCCGGGAAAAGGTGGTTCCGCGACAATTTCGAGCCGACATTCCTGGAAGAAAGAGTCCGCGGCCTGCAGACATTCGTCAACGTCATACTGTACAAGCTACCGAATAATCCAATAGTGAGGGAATTCTTTTGCCTGGACGAACCGCCCCAGGACTTCAGCTATCAACCCGAAGTTCAAGCTGTTTATGGGGCTCTAGAAGATTCTATAACGTCCCTCAGAATGCAGCTGAAACAGAAGGACGCGACCATAATGCACCTGCAGAAACGCTTGGCGCTTTTGGAGGGCACCATCGGACAATGCGGTAACTGTAGTACAAAAATAAATAACATTAGTATTTACTAG
Protein
MDIVQNINLQSRDAMNNDVSSASSEDNTTFGKIRRYYKNRRDSTSDSEMPVRPQRMHKSMHNLHENQRNDYTRSLSSIQNSISNIDLSLHRAEIKKFDKLQIPIVGYEVMEERARFTIYKLKVEDDKRDQSWLVFRRYTDFVRLYTRLKSEQPNIELPLPGKRWFRDNFEPTFLEERVRGLQTFVNVILYKLPNNPIVREFFCLDEPPQDFSYQPEVQAVYGALEDSITSLRMQLKQKDATIMHLQKRLALLEGTIGQCGNCSTKINNISIY

Summary

Pfam
PF00787   PX
Interpro
IPR036871   PX_dom_sf        + More
IPR001683   Phox       
SUPFAM
SSF64268   SSF64268       
Gene 3D
PDB
5GW1     E-value=9.53488e-28,     Score=305

Ontologies

Topology

Length:
272
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0011
Exp number, first 60 AAs:
0
Total prob of N-in:
0.06032
outside
1  -  272
 
 

Population Genetic Test Statistics

Pi
22.603257
Theta
15.943057
Tajima's D
1.060358
CLR
0.70624
CSRT
0.68101594920254
Interpretation
Uncertain
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