SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06194
Pre Gene Modal
BGIBMGA001659
Annotation
PREDICTED:_zinc_finger_protein_16-like_isoform_X2_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.538
 

Sequence

CDS
ATGCAAATATTGAATAAACAGATATTTCATACAAACGAAAATAAAATAAAGAAATTTAATAATTTAACATCATCAAATGTCACCAGTATTGAAATAAATTTTCTAAGCGAAGACACCAACATAAAACCCGGAAAAAACTTTGTATTGATTGTGGAAGACACCAATAATGAATTTCTTGAAGAAAAACACCATATTTCGGGACGAGAAGCGATGGTGGATTTTGAAAATGGTAAATCATCACCGAACGATACAGACGTGAAAGTCGAAAGCGATAGTTCCGACTTGGAGACTGCGTTGCCTTTGTCACAGATAAAAGAGAAGAAACGTAAAAATGCTGTCAGGGGAATGTGTGCGATAAAGAAGACGAAAACTGAGATGACATCTGATGCCTCTCCGTACATGGACGAAAGTTACGTCGGCAAGCTGACGATGCTGACACTGACGCGTGAGGAACTGGAGTTAGAGAGAGACAGAATGAGAACGGAGGAGAACTATTTACGGTTGCCTTACAAGTGCGAGGACTGCATCGTGGGTTATAATAAGGATGTTTTTCTGAAGAGACATCTGCGAGAGAGACATATCAAGAGAGAGAACGCTGATGTGATTGTGTGCGAGATATGTAAGTCGACGTTCAACGACAAAAGGTCGTACGTGCCGCACCACAGGAGACATTTCATTAGATACGAATGTAACACATGCGGGAAGCGGTATATCGACGAACGCGCTGTGGTCAGTCACTACAATGAGAAGCACGGCGCAGAGGGCGCCACCGTCCGGAACAAGTTCAGATGTAATATACGCGGCTGTGCTTACGAAACTCACTCGTATCGCGGCTTCGTCTACCACAGGTCGAAGCATGAGACCTACCCTTGCGAGAAATGCGGCAAGGTCTATGGGAAATGGGTGCAGCTGCGCTCCCATATGTACGGCGTCCACAACAAGAAGGTGACGTCGTACGCGTGCCCGCTCTGCCCAAAGCAGTACCGGCAGCGCTGCGGTCTGCGCGCCCACACGCGGGCGACCCACGGCGGCGCCCTCTACCGGTGCACTCTCTGCCTCAAACAGTTCAGCACTGACAATAACCTGCGGCGGCATCTCGCCGGACACTCGCGTCACGCCGCCCTGCAACCCAACAGGTACACGTGCGATAATTGCGGTGCGAAGTTCCCTACGAAGTCTCGTCTGAAGGGGCACATCGAGTGGGTACATTTGAAGATATCGAACCACCGATGCAACATTTGTCTGAAGATGGTTCGTACAGCAAGGTCGCTGAAAAACCATATAGCCTATGTCCACGAAAAGCAGAAGGTGCCCAGGGACCACATCTGCGATTATTGCGGCAAAGCGTTCACGCGCCGTTCGCTCAAGTCCCACATGGATACGCACACGGGGGCGCGCCCGCACCGCTGTACGCACTGCGGCGCCGCATTCACGCATTCCGCGACGCTTTACAACCACAAAAGACTTCTACACAATGCGGGGTCGCGTCAGAATAGTGCGCCGTGA
Protein
MQILNKQIFHTNENKIKKFNNLTSSNVTSIEINFLSEDTNIKPGKNFVLIVEDTNNEFLEEKHHISGREAMVDFENGKSSPNDTDVKVESDSSDLETALPLSQIKEKKRKNAVRGMCAIKKTKTEMTSDASPYMDESYVGKLTMLTLTREELELERDRMRTEENYLRLPYKCEDCIVGYNKDVFLKRHLRERHIKRENADVIVCEICKSTFNDKRSYVPHHRRHFIRYECNTCGKRYIDERAVVSHYNEKHGAEGATVRNKFRCNIRGCAYETHSYRGFVYHRSKHETYPCEKCGKVYGKWVQLRSHMYGVHNKKVTSYACPLCPKQYRQRCGLRAHTRATHGGALYRCTLCLKQFSTDNNLRRHLAGHSRHAALQPNRYTCDNCGAKFPTKSRLKGHIEWVHLKISNHRCNICLKMVRTARSLKNHIAYVHEKQKVPRDHICDYCGKAFTRRSLKSHMDTHTGARPHRCTHCGAAFTHSATLYNHKRLLHNAGSRQNSAP

Summary

Pfam
PF00096   zf-C2H2        + More
PF12171   zf-C2H2_jaz
PF07776   zf-AD
PF01352   KRAB
Interpro
IPR012934   Znf_AD        + More
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR022755   Znf_C2H2_jaz       
IPR036051   KRAB_dom_sf       
IPR001909   KRAB       
SUPFAM
SSF57667   SSF57667        + More
SSF109640   SSF109640       
PDB
5V3M     E-value=9.61278e-16,     Score=205

Ontologies

Topology

Length:
501
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00039
Exp number, first 60 AAs:
0.00039
Total prob of N-in:
0.00240
outside
1  -  501
 
 

Population Genetic Test Statistics

Pi
300.567741
Theta
190.455766
Tajima's D
2.259473
CLR
0.395638
CSRT
0.920753962301885
Interpretation
Uncertain
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