Gene

KWMTBOMO06191

Pre Gene Modal

BGIBMGA001661

Annotation

PREDICTED:_zinc_finger_protein_62-like_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr11(-):2078124-2089710      View in EpiBrowser

Full name

Zinc finger protein 62 homolog      

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.516

CDS

ATGAAAAAGATCAATCTGTTTTTGGAGCAAGTGGAACAGAGCTACTCCATGCTCATGGTAAAGACTCCATATAACAATGTTAACATGACTATGAATCTCGTAAGAAGCAAAATTGAAGTGATATCAACCTTAAATGATGTAAATGAAATAAAAATTGAACCTCTCACTGCTCGAATTGAAAATGAAAGTAAAATTGAAATTAAGCTTGAAGATGCACACAATATTAGCAAAGCAGATATTAGTACGGCAACACTACAGAGTCTTAATGAACCTCTACAGGCCGATCATCCTGAAGAAATAAAAGTATGTGAAGGTATTGAGGACTGCTTCGGAGCCAAACTAAAGACAACATACCTCTCACGGACAGAACTTGAAGCCGAGAGAGAGCTAGCAAAAACGCAAAGCAAATACACAGCGAAATTGCACAAATGTGAAAAATGTGTGGTTTCATACGATAATGACTTGCATTTGAGAAATCATTTGCTTTTGAGGCATAATGAGAAAAATCGTTACAAGTGCGAAATCTGTGACTGTACTTACGACACAGAACTCAAATTGGAGACGCACACCAGGAGGCATTACCTTAGATTCGAATGCTTAGAGTGCAATAAGCGGTACGTGGACAGGAAAACGGCAGCCATACACTGCCAGGCGAAGCATTCGGAACGTGTCGAGACGTATAGTTGTGATTATGTCCATTGCAGCTATGAGACCAATTCTCTTGCCAGTCTGAGGTATCACGCATCGAAACACAAAGAAGAATTCTGCGAATTGTGTAAGAAAACGTATCCATACGGAAGACTCTGGAATCACATGAACTTGGTACACGGAAACGTTGCGAAGATCAAATGCGATCTGTGCGATAAATCTTACAAGCAACGTTCGGCGCTCGCGATGCATCGCCTATCCGCCCACAGTGGGGACGGTGGTCAGGAATCGTACTGCGTCGACTGTGGGAAGTTCTTCTGTAACAAATACAGTCTGGCCGTTCACTTGAGGGAGCATTCCGAACATGTGGGCAAAAGATACGAATGCGATGATTGTGGATTGAAATATTATACGAGACGAAGCATCGTCAGGCATATAACGAGTGCGCATTTGGGCGGAGCGACCGAGCATAAGTGTCCACGTTGCGACAAGATATTCGCCACAGCGCACCACAAACGGAGACACATGAGGCTCAAACACGAAAGCAAGAAGATGCCCCGGGACAAGATATGCGAGATTTGCGCGAGCAGCTTCACGTCTTCGAAAATGTTAAAGGCGCACATACGCACGCACACCGGTGAGCGCCCGTACGTTTGTCCGGTGTGCGAGGCCACTTTTGCTCATTCGGGCACGCTGTACAACCACAAGCGGCTGATGCACGGCCGCGCTCTGGAGAAATGA

Protein

MKKINLFLEQVEQSYSMLMVKTPYNNVNMTMNLVRSKIEVISTLNDVNEIKIEPLTARIENESKIEIKLEDAHNISKADISTATLQSLNEPLQADHPEEIKVCEGIEDCFGAKLKTTYLSRTELEAERELAKTQSKYTAKLHKCEKCVVSYDNDLHLRNHLLLRHNEKNRYKCEICDCTYDTELKLETHTRRHYLRFECLECNKRYVDRKTAAIHCQAKHSERVETYSCDYVHCSYETNSLASLRYHASKHKEEFCELCKKTYPYGRLWNHMNLVHGNVAKIKCDLCDKSYKQRSALAMHRLSAHSGDGGQESYCVDCGKFFCNKYSLAVHLREHSEHVGKRYECDDCGLKYYTRRSIVRHITSAHLGGATEHKCPRCDKIFATAHHKRRHMRLKHESKKMPRDKICEICASSFTSSKMLKAHIRTHTGERPYVCPVCEATFAHSGTLYNHKRLMHGRALEK

Description

May play a role in differentiating skeletal muscle.

Similarity

Belongs to the krueppel C2H2-type zinc-finger protein family.

Keywords

Alternative splicing   Complete proteome   Isopeptide bond   Metal-binding   Nucleus   Polymorphism   Reference proteome   Repeat   Transcription   Transcription regulation   Ubl conjugation   Zinc   Zinc-finger  

Feature

chain  Zinc finger protein 62 homolog
splice variant  In isoform 3.
sequence variant  In dbSNP:rs705441.

Uniprot

A0A2W1BK83   A0A194QRA1   A0A3S2L580   A0A0N1IE69   A0A2A4JGB7   A0A2H1W7Z1   + More
A0A0N0PBL1   A0A0N1IGS5   A0A0N1ICJ9   A0A2A4JMU5   A0A2H1WUB2   H9IWZ4   A0A0N1IEI9   A0A060W2A8   A0A3P8SWG4   A0A1J1IX89   V9KSJ4   A0A212F827   A0A2K5RYF4   A0A1S3L3Z1   A0A1S3L4R4   A0A1S3NG47   H2PHN1   A0A0L8FT32   G3QFW6   A0A3P8SWC3   H2R535   A0A2K5RYF5   A0A2K5RYH7   A0A2J8JT99   A0A2R9C791   Q8NB50   Q8NB50-3   A0A2J8JT96   A0A2K6P4S6   A0A2K6JZ19   A0A2K6AWJ5   A0A0D9R6S1   A0A2K5IE11   A0A1D5QCB8   A0A096N6B2   A0A2K5TQZ4   A0A2K5XH95   H9FYG1   A0A2K5C3M6   A0A2K5LLC7   A0A0L8I611   G7P743   F1RH10   L5JXF2   G7MUK5   A0A2J8SCK0   V9KIJ4   A0A286ZYE2   A0A2J8SCP3   L5LQX2   S7MUD3   A0A0L8GB46   S4PJM9   G1Q8Z7   F7I3G7   G3HK14   U3DPP7   A0A1W5A7L2   A0A2K6TSA1   A0A1U8C3B5   A0A1U7QE14   A0A0L8G9P3   A0A091CRH3   A0A2U4CMQ1   A0A2Y9LY50   A0A0L8IF33  

Pubmed

28756777    26354079    19121390    24755649    24402279    22118469    + More
22398555    16136131    22722832    14702039    15372022    17974005    15489334    25218447    25772364    25755297    28112733    25362486    17431167    25319552    22002653    30723633    23258410    23622113    21993624    21804562    25243066   

EMBL

KZ149995    PZC75449.1    KQ461198    KPJ06061.1    RSAL01000142    RVE46032.1    + More
KQ458725    KPJ05352.1    NWSH01001510    PCG71021.1    ODYU01006917    SOQ49191.1    KQ460969    KPJ10206.1    KQ460400    KPJ14980.1    KPJ05382.1    NWSH01000953    PCG73395.1    ODYU01010720    SOQ56004.1    BABH01021154    KQ458486    KPJ05869.1    FR904310    CDQ58700.1    CVRI01000063    CRL04767.1    JW868841    AFP01359.1    AGBW02009801    OWR49895.1    ABGA01166676    KQ426774    KOF67839.1    CABD030042844    CABD030042845    AACZ04045833    NBAG03000426    PNI26003.1    AJFE02018933    AJFE02018934    AK091550    AK295714    AK303450    DA323041    AC022413    AL832408    BC140761    BC171780    PNI26005.1    AQIB01151306    JSUE03037724    AHZZ02030573    AQIA01061733    AQIA01061734    JU335917    AFE79670.1    KQ416444    KOF96953.1    CM001281    EHH54839.1    AEMK02000010    DQIR01024962    HCZ80437.1    KB031114    ELK03186.1    CM001258    EHH27127.1    NDHI03003584    PNJ18506.1    JW865285    AFO97802.1    PNJ18508.1    KB109781    ELK27898.1    KE162077    EPQ06965.1    KQ422783    KOF74251.1    GAIX01004880    JAA87680.1    AAPE02054978    JH000448    EGV96590.1    GAMS01007785    JAB15351.1    KQ423013    KOF73741.1    KN124547    KFO20802.1    KQ415854    KOG00075.1   

Proteomes

UP000053240    UP000283053    UP000053268    UP000218220    UP000005204    UP000193380    + More
UP000265080    UP000183832    UP000007151    UP000233040    UP000087266    UP000001595    UP000053454    UP000001519    UP000002277    UP000240080    UP000005640    UP000233200    UP000233180    UP000233120    UP000029965    UP000233080    UP000006718    UP000028761    UP000233100    UP000233140    UP000233020    UP000233060    UP000009130    UP000008227    UP000010552    UP000001074    UP000008225    UP000001075    UP000192224    UP000233220    UP000189706    UP000028990    UP000245320    UP000248483   

PRIDE

H9IWZ4    Q8NB50    F1RH10    G3HK14   

Pfam

PF00096   zf-C2H2        + More
PF12171   zf-C2H2_jaz
PF07776   zf-AD
PF00651   BTB

Interpro

IPR012934   Znf_AD        + More
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR022755   Znf_C2H2_jaz       
IPR017114   YY-1-like       
IPR011333   SKP1/BTB/POZ_sf       
IPR000210   BTB/POZ_dom       

SUPFAM

SSF57667   SSF57667        + More
SSF54695   SSF54695       

ProteinModelPortal

A0A2W1BK83   A0A194QRA1   A0A3S2L580   A0A0N1IE69   A0A2A4JGB7   A0A2H1W7Z1   + More
A0A0N0PBL1   A0A0N1IGS5   A0A0N1ICJ9   A0A2A4JMU5   A0A2H1WUB2   H9IWZ4   A0A0N1IEI9   A0A060W2A8   A0A3P8SWG4   A0A1J1IX89   V9KSJ4   A0A212F827   A0A2K5RYF4   A0A1S3L3Z1   A0A1S3L4R4   A0A1S3NG47   H2PHN1   A0A0L8FT32   G3QFW6   A0A3P8SWC3   H2R535   A0A2K5RYF5   A0A2K5RYH7   A0A2J8JT99   A0A2R9C791   Q8NB50   Q8NB50-3   A0A2J8JT96   A0A2K6P4S6   A0A2K6JZ19   A0A2K6AWJ5   A0A0D9R6S1   A0A2K5IE11   A0A1D5QCB8   A0A096N6B2   A0A2K5TQZ4   A0A2K5XH95   H9FYG1   A0A2K5C3M6   A0A2K5LLC7   A0A0L8I611   G7P743   F1RH10   L5JXF2   G7MUK5   A0A2J8SCK0   V9KIJ4   A0A286ZYE2   A0A2J8SCP3   L5LQX2   S7MUD3   A0A0L8GB46   S4PJM9   G1Q8Z7   F7I3G7   G3HK14   U3DPP7   A0A1W5A7L2   A0A2K6TSA1   A0A1U8C3B5   A0A1U7QE14   A0A0L8G9P3   A0A091CRH3   A0A2U4CMQ1   A0A2Y9LY50   A0A0L8IF33  

PDB

5V3M     E-value=4.7801e-18,     Score=224

KEGG

101737282    no KO assigned | (RefSeq) zinc finger protein 225-like

GO

GO:0005634   GO:0003676   GO:0008270   GO:0008168   GO:0046872   GO:0044212   GO:0005654   GO:0045944   GO:0000122   GO:0003700   GO:0000981   GO:0022857   GO:0004559   GO:0006013   GO:0015923   GO:0006260  

Subcellular location

Nucleus  

Length:

462

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00159

Exp number, first 60 AAs:

0.00021

Total prob of N-in:

0.00291

outside

1  -  462

 

 

Pi

286.912669

Theta

25.842296

Tajima's D

0.447143

CLR

1.402413

CSRT

0.508124593770311

Interpretation

Uncertain