Gene

KWMTBOMO06186

Annotation

PREDICTED:_zinc_finger_protein_28-like_[Bombyx_mori]

Location

Bomo_Chr11(+):2012971-2017362      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 3.248

CDS

ATGAGTGCACGAGATCACGGCCCTCCTGGTGTTGAGTGGTCACCGGAGCCCATGGACATCAACAACCTCCTCATATCGAAGTGGCGTCTCAAGGACCACGAGAGGAAGCACCACGGGTCGAGCCGACCCAGGGACCACTGCTGCAAGACCTGCGGGAAGAGATTCTACACTCTATCCAGCCTGCACGGTCATCAGTTGATCCACGACCCGCAGAGGGGCTACATGTGCGAGGAGTGCGGGGACACGTTCAAACAGCCGGCCGCTCTCTATACGCATTCTAGATTGGTGCACAGGAATGCGAAGTGA

Protein

MSARDHGPPGVEWSPEPMDINNLLISKWRLKDHERKHHGSSRPRDHCCKTCGKRFYTLSSLHGHQLIHDPQRGYMCEECGDTFKQPAALYTHSRLVHRNAK

Uniprot

A0A3S2NV19   A0A0N0PBL1   A0A0N0PAK7   A0A2A4J7P7   A0A2H1WUB2   A0A2W1B042   + More
A0A1U7QYU9   A0A060YK24   M0RCK0   Q5PPQ4   Q3U2V8   A0A3P8YVU8   A0A1E1W6H5   Q80UY3   A0A212F8F4   A0A1B0CYR2   A0A3Q2UZH3   A0A3B5LTZ6   G3IM67   A0A1S3QKK8   H9IWZ5   S4NN42   A0A3S2PCA5   H9H749   A0A3Q2V817   A0A2H1VWX0   A0A1B6GKV0   H9IWM4   W5LWU9   G3VJX4   A0A182T8W5   A0A3B3H7H6   A0A060WFS9   A0A1S3WKQ2   S4PXE3   A0A2W1BCQ2   A0A3P9KID7   A0A3B3INK9   W5LWY6   A0A1S3RLF0   H9JQV0   A0A1S3QMN9   A0A3Q0J1R5   A0A2G9QI59   A0A3P9M1F6   A0A2R7VY71   S4RFV1   G1KVR1   A0A3P9KIN5   S4RFV3   H0ZW53   Q4TAD0   A0A0N1PHY6   A0A0N1IEI9   A0A087UAB4  

Pubmed

26354079    28756777    24755649    15057822    15489334    19468303    + More
10349636    11042159    11076861    11217851    12466851    16141073    25069045    22118469    21804562    19121390    23622113    17495919    21709235    17554307    20360741    15496914   

EMBL

RSAL01000063    RVE49479.1    KQ460969    KPJ10206.1    KQ458725    KPJ05348.1    + More
NWSH01002684    PCG67688.1    ODYU01010720    SOQ56004.1    KZ150535    PZC70589.1    FR912482    CDQ91922.1    AABR07003234    AC154108    BC087557    AAH87557.1    AK155078    BAE33032.1    GDQN01008479    JAT82575.1    BC043301    AAH43301.1    AGBW02009729    OWR50026.1    AJVK01020326    AJVK01020327    JH004522    EGW05050.1    BABH01021157    GAIX01014096    JAA78464.1    RSAL01000105    RVE47324.1    ODYU01004954    SOQ45347.1    GECZ01006836    JAS62933.1    BABH01021167    AEFK01123826    FR904531    CDQ66133.1    GAIX01005188    JAA87372.1    KZ150132    PZC73042.1    BABH01028690    KV990864    PIO14763.1    KK854082    PTY10885.1    ABQF01073408    ABQF01073409    CAAE01007378    CAF90152.1    KQ460555    KPJ14020.1    KQ458486    KPJ05869.1    KK118972    KFM74303.1   

Proteomes

UP000283053    UP000053240    UP000053268    UP000218220    UP000189706    UP000193380    + More
UP000002494    UP000000589    UP000265140    UP000007151    UP000092462    UP000264840    UP000261380    UP000001075    UP000087266    UP000005204    UP000002280    UP000018468    UP000007648    UP000075901    UP000001038    UP000079721    UP000265180    UP000079169    UP000245300    UP000001646    UP000007754    UP000054359   

PRIDE

M0RCK0    G3IM67    H9IWZ5    H9IWM4    H9JQV0   

Pfam

PF00096   zf-C2H2        + More
PF01352   KRAB
PF05605   zf-Di19
PF07776   zf-AD
PF12171   zf-C2H2_jaz

Interpro

IPR003604   Matrin/U1-like-C_Znf_C2H2        + More
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR012934   Znf_AD       
IPR036051   KRAB_dom_sf       
IPR001909   KRAB       
IPR008598   Di19_Zn_binding_dom       
IPR017114   YY-1-like       
IPR003656   Znf_BED       
IPR006141   Intein_N       
IPR022755   Znf_C2H2_jaz       
IPR017125   Znf_PRDM5-like       
IPR011017   TRASH_dom       

SUPFAM

SSF57667   SSF57667        + More
SSF109640   SSF109640       

CDD

cd07765  KRAB_A-box

ProteinModelPortal

A0A3S2NV19   A0A0N0PBL1   A0A0N0PAK7   A0A2A4J7P7   A0A2H1WUB2   A0A2W1B042   + More
A0A1U7QYU9   A0A060YK24   M0RCK0   Q5PPQ4   Q3U2V8   A0A3P8YVU8   A0A1E1W6H5   Q80UY3   A0A212F8F4   A0A1B0CYR2   A0A3Q2UZH3   A0A3B5LTZ6   G3IM67   A0A1S3QKK8   H9IWZ5   S4NN42   A0A3S2PCA5   H9H749   A0A3Q2V817   A0A2H1VWX0   A0A1B6GKV0   H9IWM4   W5LWU9   G3VJX4   A0A182T8W5   A0A3B3H7H6   A0A060WFS9   A0A1S3WKQ2   S4PXE3   A0A2W1BCQ2   A0A3P9KID7   A0A3B3INK9   W5LWY6   A0A1S3RLF0   H9JQV0   A0A1S3QMN9   A0A3Q0J1R5   A0A2G9QI59   A0A3P9M1F6   A0A2R7VY71   S4RFV1   G1KVR1   A0A3P9KIN5   S4RFV3   H0ZW53   Q4TAD0   A0A0N1PHY6   A0A0N1IEI9   A0A087UAB4  

PDB

2I13     E-value=3.0867e-05,     Score=106

KEGG

101740902    no KO assigned | (RefSeq) zinc finger protein 28-like

GO

GO:0046872   GO:0003676   GO:0008270   GO:0005634   GO:0006355   GO:0003677   GO:0016539   GO:0000976   GO:0016020   GO:0022891   GO:0022857   GO:0004559   GO:0006013   GO:0015923   GO:0006260  

Length:

101

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14896

outside

1  -  101

 

 

Pi

276.409531

Theta

169.230898

Tajima's D

2.442941

CLR

0.668419

CSRT

0.938453077346133

Interpretation

Uncertain