Gene

KWMTBOMO06179

Pre Gene Modal

BGIBMGA001666

Annotation

PREDICTED:_nucleosome-remodeling_factor_subunit_BPTF_[Papilio_polytes]

Location

Bomo_Chr11(-):1946043-1949640      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.807

CDS

ATGCTTTCCGTTTCGCAGTTGAGCAGAGAAGAGGAGAAGGACGGAAAGAAAAAGAGAGACTATTCTAGAAAGAAGAAATCCGATTCTCGAACCTGCTCAGGGTCGGAGAGCGCTGCGGAGACCAGCGCCCCGGACTCGCCCAGCGGCAACGACGCCGAGAGACAGCACCGCCTGTGGAGGAAGTCCGTCATGCTGGTCTACAGCAGATTGTGCGCCCATAAATACGCTTCGTTGTTCCTCCGTCCGATCAGCGACGAGGAGGCGCCCGGGTACAGCGTCGTCGTGAAGCGGCCCATGGACCTCACCACGATCCGCAGGAACATCGACAACGGAAACATCAGGACGACGGCCGAGTTCCAGCGCGACGTGCTCCTGATGCTGTCCAATGCCCTCATCTACAACAGCACGGAGCACAGTGTCCACTCGATGGCGAAGGAGATGCACGAGGAGGCTCAGTGTCAGCTGGGCATGCTGGTGGCTGCGCAGGCGCACGCCGGACTGTGCGCCGCCCCCCCGCTGCGGAGGAAGAGGAGGCGCCACCACTCCCCCCTGCACCACCCCGCGCACTACACGCGCCCGCACTGA

Protein

MLSVSQLSREEEKDGKKKRDYSRKKKSDSRTCSGSESAAETSAPDSPSGNDAERQHRLWRKSVMLVYSRLCAHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEEAQCQLGMLVAAQAHAGLCAAPPLRRKRRRHHSPLHHPAHYTRPH

Uniprot

H9IWN4   A0A2A4K5G6   A0A212F487   S4PGH2   A0A1E1WLI2   A0A194Q4Z9   + More
V5I6E6   E0VFW5   A0A067R8G4   A0A3S3PA68   A0A0P5HU95   A0A0P5HXK0   A0A0B7AN89   T1KG49   A0A026W9H9   A0A3L8DYM5   A0A3S1AXJ8   A0A210QL55   A0A3R7M2X0   A0A0B7AQV6   A0A0B7AQU7   A0A195BRB2   A0A1E1XJS8   A0A158NZL7   T1IIC5   T1FUX7   A0A0P4XX32   A0A0P5AH37   A0A0B7AQT4   A0A0P6J8B5   A0A0P5YIK9   A0A0P5PH60   A0A131Z0S7   A0A1Z5L3V3   E9G2D3   A0A0B7AMM0   A0A0L8GJP8   A0A224YP87   A0A224YSJ0   A0A0B7ANX6   A0A0B7AMP1   A0A1W4XC19   N6TAA1   E7F3M6   W5LHN2  

Pubmed

19121390    22118469    23622113    26354079    20566863    24845553    + More
24508170    30249741    28812685    29209593    21347285    23254933    26830274    28528879    21292972    28797301    23537049    23594743    25329095   

EMBL

BABH01021142    BABH01021143    NWSH01000107    PCG79471.1    AGBW02010415    OWR48547.1    + More
GAIX01000764    JAA91796.1    GDQN01003190    JAT87864.1    KQ459463    KPJ00434.1    GALX01008320    JAB60146.1    DS235124    EEB12271.1    KK852669    KDR18841.1    NCKU01001805    RWS11201.1    GDIQ01222199    JAK29526.1    GDIQ01222200    JAK29525.1    HACG01035448    CEK82313.1    CAEY01000044    KK107321    EZA52700.1    QOIP01000002    RLU25392.1    RQTK01001561    RUS69833.1    NEDP02003088    OWF49477.1    QCYY01002437    ROT70365.1    HACG01035450    CEK82315.1    HACG01035440    CEK82305.1    KQ976423    KYM88749.1    GFAA01004163    JAT99271.1    ADTU01000888    AFFK01014253    AMQM01006515    AMQM01006516    KB097487    ESN96827.1    GDIP01235564    GDIP01038984    LRGB01000512    JAI87837.1    KZS18695.1    GDIP01199668    JAJ23734.1    HACG01035425    CEK82290.1    GDIQ01011400    JAN83337.1    GDIP01058789    JAM44926.1    GDIQ01138724    JAL13002.1    GEDV01004491    JAP84066.1    GFJQ02005092    JAW01878.1    GL732530    EFX86231.1    HACG01035419    CEK82284.1    KQ421523    KOF77227.1    GFPF01006413    MAA17559.1    GFPF01006415    MAA17561.1    HACG01035442    CEK82307.1    HACG01035439    CEK82304.1    APGK01045628    KB741037    ENN74658.1    BX510945   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000009046    UP000027135    + More
UP000285301    UP000015104    UP000053097    UP000279307    UP000271974    UP000242188    UP000283509    UP000078540    UP000005205    UP000015101    UP000076858    UP000000305    UP000053454    UP000192223    UP000019118    UP000000437    UP000018467   

PRIDE

H9IWN4    E7F3M6   

Pfam

PF00439   Bromodomain

Interpro

IPR001487   Bromodomain        + More
IPR037966   Brd8_Bromo_dom       
IPR036427   Bromodomain-like_sf       
IPR038002   BRD8       
IPR018359   Bromodomain_CS       

SUPFAM

SSF47370   SSF47370       

Gene 3D

1.20.920.10    

CDD

cd05507  Bromo_brd8_like

ProteinModelPortal

H9IWN4   A0A2A4K5G6   A0A212F487   S4PGH2   A0A1E1WLI2   A0A194Q4Z9   + More
V5I6E6   E0VFW5   A0A067R8G4   A0A3S3PA68   A0A0P5HU95   A0A0P5HXK0   A0A0B7AN89   T1KG49   A0A026W9H9   A0A3L8DYM5   A0A3S1AXJ8   A0A210QL55   A0A3R7M2X0   A0A0B7AQV6   A0A0B7AQU7   A0A195BRB2   A0A1E1XJS8   A0A158NZL7   T1IIC5   T1FUX7   A0A0P4XX32   A0A0P5AH37   A0A0B7AQT4   A0A0P6J8B5   A0A0P5YIK9   A0A0P5PH60   A0A131Z0S7   A0A1Z5L3V3   E9G2D3   A0A0B7AMM0   A0A0L8GJP8   A0A224YP87   A0A224YSJ0   A0A0B7ANX6   A0A0B7AMP1   A0A1W4XC19   N6TAA1   E7F3M6   W5LHN2  

PDB

5C4Q     E-value=5.56402e-14,     Score=184

KEGG

101739636    K11655 bromodomain adjacent to zinc finger domain protein 1A | (RefSeq) bromodomain adjacent to zinc

GO

GO:0016021   GO:0035267   GO:0000812   GO:0016740   GO:0002244   GO:0005515   GO:0008654   GO:0006355   GO:0003700   GO:0043565   GO:0004559   GO:0006013   GO:0015923   GO:0005634   GO:0006260  

PANTHER

PTHR15398:SF6  

Length:

194

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05338

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.05195

outside

1  -  194

 

 

Pi

305.0787

Theta

151.815202

Tajima's D

3.699777

CLR

2.187401

CSRT

0.996350182490875

Interpretation

Uncertain