Silkworm Genome Informatics Database

Gene

KWMTBOMO06153

Pre Gene Modal

BGIBMGA001677

Annotation

PREDICTED:_uncharacterized_protein_LOC106141537_[Amyelois_transitella]

Location

Bomo_Chr11(-):1481172-1482573 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.357

CDS

ATGTCGGACAACGAAGACGAAGTGACACCTTTAGAATCGTTTCCCACCGAAATATTATCGCACATTTTCACTTTTCTACCAGCGAAACAGTTGACGAAATGCCGGGAAGTTTGCATCCGCTGGAAGAACGTCATCGATACCCTCAACAAATACCATTCATTGTGGTATAAGTTTTGCGGAAAGGACTTTAAAAACGTTTACAAATTCGCTCACCGGCTCTCCCGTCCTCAGATCACTTGGCACGAGCTCTACAGGTCTCTGACTCTGTGGAGGCAACTGCACCTCGCTAGACAGCACTACGACGAATTCGCGTCAGCAACCACGGTGGCCAGCGAAATCCAGGGCTTCAGATATTTACGAAACGGAACGGCCGGCGTCCACACTAAAGCCGGCGTGGTGTATTATGATTTGGACACGCTACAGCGAAGCAAACGCGCAGTTATTTACGGCGACTACAACCGCTATGTCGAAACCGACGACACAGTACTCCTGATGAATAGCAATCTACATTTGTTCATAACAAGAAAACTAATACGTAGCCCCAAGCACATAGCTAGTATTTCTCATGATAATTGTAAACTGTTTTATGTGATAGACAACGTAGTTTATTACGTATCTCTAAACGAGAGTATATACGCTGTGTACCTGTCCGATAAAGAATTAAAATCGCATTTCCTAGTACAGTCTACGGAGGGCATCATTTGTTTAGGGCATACAGGCAAAAACTTGAACATCATTACGTTGGAACGGAATATTTATACATTAATCGGACATGAATTACAACTACAGTGTACTATAACAGAGGAGAGTAATTTGTTACATGAATTCAATAAGTATAACCTGTTCGACCATTTCGATTGGAGAGTATACATTCAATGGATGTTTGCTCTATGTTTCAAATTACCGGAAGGTCCACTACGAGATATAGTGACGGTGAGGTCATATGGAGACATATTTTTTGTCGGCTCCGATTGGGGTGTACTAAGAATATATCATTCGCCGTTCACAAATGGAGAGTTAGACTTCATGAACCACATGCCATTGAAACAGTATAATTTTATGGAGAGAAGCGACTGCCCAGTGCTCTCGGTGTGTCCAATAATTGAAATCGAAGTAATGGAGATAGTCGACGGGCATATAATCATGGTAGCGATGCCTAAGAAAGTGGCAGTACTCACATTTAGTCACTGTTTCAAGAGGGCTGCCTCGATAGCAATGTTTTCCAATTCCAATCTTCAGAGAGTTAAGTTTTTGAAGATTGAGGAAGAAGTTGGAGCCATATAA

Protein

MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRPQITWHELYRSLTLWRQLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTLQRSKRAVIYGDYNRYVETDDTVLLMNSNLHLFITRKLIRSPKHIASISHDNCKLFYVIDNVVYYVSLNESIYAVYLSDKELKSHFLVQSTEGIICLGHTGKNLNIITLERNIYTLIGHELQLQCTITEESNLLHEFNKYNLFDHFDWRVYIQWMFALCFKLPEGPLRDIVTVRSYGDIFFVGSDWGVLRIYHSPFTNGELDFMNHMPLKQYNFMERSDCPVLSVCPIIEIEVMEIVDGHIIMVAMPKKVAVLTFSHCFKRAASIAMFSNSNLQRVKFLKIEEEVGAI

Uniprot

H9IWP5 A0A2A4JX01 A0A2W1AZW9 A0A194Q4G6 A0A0N1INY0 A0A1E1VXQ2 + More
A0A194PT21 A0A194R4T7 A0A2A4JCU3 A0A212EKB9 A0A2H1VU84 A0A212FKM9 A0A2A4K1S2 A0A194QCJ9 A0A2W1BA22 A0A0N0PCF8

Pubmed

19121390 28756777 26354079 22118469

EMBL

BABH01021081 NWSH01000417 PCG76537.1 KZ150547 PZC70562.1 KQ459463 + More
KPJ00437.1 KQ460736 KPJ12612.1 GDQN01011582 JAT79472.1 KQ459593 KPI96462.1 KQ460890 KPJ10871.1 NWSH01001921 PCG69669.1 AGBW02014294 OWR41926.1 ODYU01004481 SOQ44397.1 AGBW02008029 OWR54286.1 NWSH01000255 PCG77976.1 KQ459386 KPJ01166.1 KZ150233 PZC71988.1 KQ460601 KPJ13811.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000007151

PRIDE

H9IWP5

Pfam

PF12937 F-box-like + More
PF00646 F-box

Interpro

IPR036047   F-box-like_dom_sf        + More
IPR001810   F-box_dom
IPR036322   WD40_repeat_dom_sf

SUPFAM

SSF81383 SSF81383 + More
SSF50978 SSF50978

ProteinModelPortal

H9IWP5 A0A2A4JX01 A0A2W1AZW9 A0A194Q4G6 A0A0N1INY0 A0A1E1VXQ2 + More
A0A194PT21 A0A194R4T7 A0A2A4JCU3 A0A212EKB9 A0A2H1VU84 A0A212FKM9 A0A2A4K1S2 A0A194QCJ9 A0A2W1BA22 A0A0N0PCF8

PDB

3WSO E-value=0.01075, Score=92

KEGG

101746532 K22262 WD repeat and FYVE domain-containing protein 3 | (RefSeq) WD repeat and FYVE domain-containin

GO

GO:0005515 GO:0015074 GO:0020037 GO:0005874 GO:0007017 GO:0004559 GO:0006013 GO:0015923 GO:0005634 GO:0006260

Length:

427

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13576

Exp number, first 60 AAs:

0.0021

Total prob of N-in:

0.00845

outside

1 - 427

Pi

237.732002

Theta

187.95745

Tajima's D

0.833349

CLR

0.116604

CSRT

0.611269436528174

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics