Silkworm Genome Informatics Database

Gene

KWMTBOMO06151

Annotation

retrovirus-related_gag-pol_polyprotein_[Lasius_niger]

Location

Bomo_Chr11(+):1429524-1446477 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.898

CDS

ATGTTTAAAATTAACTACGTATTGTTAATTTTTGTTTTATCGAACTGTGTTAATTGTAATGTTTACATTGGGAATGGCAAAATGAAACAATTGTACGCTTGGAAGCAATTAGGATACGATTTTAATGGAACAAAATATATAAAAGATGCAGACCGCATACGCTCGCCCGGAGCGATACATTTCGTCCAAGAGCTAGGAGACAGCGAGAAATTCTTTATACAGTACAATAATGTGCCGACAGGAATCAAGTTTGTCGGAGATCTGCTATTTTTGACGGTCCCAAGGAGGAGATTTGGGATTCCATCGACGTTAAACTACATAGACAGGAGACACAGTAAAAAACTGGATCCACTTCTGAAGCCTTATCCAAATCCAGAGGCGGTCTCGTCTCTGACATCGGTATACCGGACTGCGATCGACTCGTGTGCCAGACTGTGGATGGTGGATACCGGACTGCTAGAGGTTCCCGGTGCGAGAAGACAAGTGAAGCCACCGGCGATCCTGGCTTACAATTGGCTGACACATAAGCTGGATTTCAGATACGAACTGGATCCGAAGGTATTGGTCAATGAGCGAACTCCTGGTGGTCTGACGTCGCTTACGATCGACGTGGAGCCGACTGCTTGTGGCGAGGCGCACGCCTACATAACGGACTTGGCGACTAATGGCCTGATTGTCTTCTCTCTGGGAGCCCGAGCTTTCTGGAGGATCGACCACCCGAGCTTCGTTCATGGCGAGAAAGCTTTGAACTTCACCGTAGCGGGCAACGTCATTAGCTGGAAAGATGGTTTGTTCAGCATCGCTTTATCCGATGTTGGTGGCAAGAGATTGGCATACTACCATCCCATGGTGTCGACTCACGAGTACGCCATAGACACGGCCGTCCTGAAGAATGGGGGAGCTGACTTCGACAAGGAGTATAAAGTGTTGGGGAGCCGTGGTCCGCTGTCCCAGAGCGGGATACACTCCCACCACGCAGCGAGTAGTGTATTGTTCTACGCGAATGTCGCCCGGGATGGGATCGTCTGTTGGAACACGAAGAAACCGCTCGTCGAGGAGAATGTCGCTCTGATCGTTCAGGATCGAGAGAAGCTGCTTTACATCACCGATTTAGCGATAAGGCAGAATGAGCTTTACGTGTTGGTCAATAAAATGCCAGTTTTTGTATTTTCAATGTTGAACAAAGAAGAATATAATTTCTTCATGCACAGAAACTACAAAATGACTTCTAATATTAAGATTGATCGACTTACGGGTGATAACTATGACACCTGGAAGATTCACATGCGAGCTATTCTGAAGAAGAATGATTTGTGGGAATACGTATCAGGAAAAATACCGAAACCAATACATTCAGATTCTAAATATTCTGAATGGAATAAAATGGACGGAAAAGCCGAATCGGACATATTGTTAGCTGTCAGCCCGAGCGAGTTAATTGCACTGGATGGTTTAGACTCCTCTAAAGCAATATGGGACAAGTTAAAATCTATGTATGAGTCAAGCGGGCCAGCGCGAAAAGCGTCATTACTAAAGAGACTTGTATTAAAGCGTATGCCAGAAGATGGAGACATACGAAAACATATTTCTGATTTTTTCGACTGTGTTAAGAAGCTTAAAGAAATCGGATTAATAGTGATAGATGAGTTGCTTGCTATTTTATTACTTTATAGTTTACCGGATTCGTTCTCAATGTTTCGAACAGCAATGGAATCGCGTGATGATTTACCATCAACTGATATACTGAAAGTGAAGATTATCGAGGATTATGAAGGTCGGAAGAATTTGAATTTGGCTAATGGTAAAACTACAAAAATTAGCGGTTCGGGAAAAGTCAGTATTATGGTAGACACAGGCAGCGAAAAGCGCCATGTTGATATTAAAAAAGTGTTCTACGTGTCGGATCTACGAACTAATTTATTATCAGTTGCGAAGATGACAGATCACGGGTTTGAAGTTCGCTTCAATAAAAATTATGCAATTGTCATAGATGACAATAATAAGGTTCATATGCGAGCGGATCGAGTTGGTAACTTATACCACGTCCGAATGAGCCAAGATGATGTCAATAATGTTGAAATGGTGAAAAAACCTATAGATATGTGGCACGAGCGCCTCGGCCACCTTAACGAGCGTGATTTGAAGGCAATGGCGAAAAATGGCCTTGTTCATGGCCTATCATTGAAGGACAACGAAAAATTGTCAGAGTGTGAAATATGTATAAGTGAAAAACAGACATGCACGCCTTTTTCTAAAGGAAGCGAAGATCGTACCAGTGAACTATTGGAGATCGTGCATACAGATGTGTGCGGACCAATGAGACAACAGTCTATGGGCGGTAAAAAGTATTTTGTCACGTTCATCGACGACAAATCAAGATGGTGTGAAGTATACTTTATTGCTAATAAAAGCGACGTACTTCAAGTTTTCAAAGATTACAAGGCTTACGTGGAAAAATTGACAGGAAAGAAGATCAAAAATCTACAATCCGATAACGGTCGAGAATATATTAACAAAGACTTTGATGATTTCTTGAAGAAAGAAGGAATAAGACGGAGGTTGACGGCACCTTATACGCCTCAGCAGAACGGGATTTCGGAGAGAAAGAACAGGACACTGCTGGAGATGGCCCGTTGTATGATGCGTCAGGCGGGAAGCCCTCCTGTTTTTTGGGCTGAAGCAATTAATACTGCTAATTACATAAGGAACCGGTGCCCAACTGCAGCTCTTGATGGTCAAATACCATTTACCCTGTGGAAAAGAAAGAAACCTACCGTAATCTACATGCGTTTGTTTGGATCGAAAGCGTATTATAAAAACAAAGGAACGCAGAAGGGAAAATTCGAATTAAGTTCAGAGCTTGGAATATTTATGGGCTATGATACTGAGTCTAAAGCTTACAGAATACATGATCCTAAGACTAGAAGGATCGTCATTTCTCGCGATGTGAAGTTTATGAACGAGACAGCATTCTGTCATGAGTATAAAGAAATACGAAATGATGAAGAAGAGAGTTTTGATAATTCGAAGATAGTCGTTGAATTGATAGGACATGATCAGAAGAAGGAAAATCGAAAAACAAACCCCATGAGAGGGAGAGGAAGACCAAGGATAGTTCGTACTGGCTTAGTGGGAAGACCGCGCAAAGAGTATAAACCAGCTACTATCAGTACAGAGAGTGAAACTGAATCAGAGTATGAAGTAGATAATGAAGAAACAACAGCTGGAATTGCGATTATTGAACCTAAAACATGGAAAGAAATAGAAAAGACTGATGACGAACCTGAATGGCGAAGGGCTTTAGAAGACGAGTATTTGGCACAATTAAAGAATGTTACATGGGAAATAGTCCCACGACCGAAAAATAGAAAAGTGATTGGTAGCAGATTTGTATTTCAAACAAAGAATACAGGGAAGAAAGTACGGCTTGTCGCAAAGGGATGTTCTCAAAGGCCAGGGGAGGATATTTACGAAACCTCTTCTCCTGTTGTAAGGTCTTCATCTGTGAGACTCATAGCTGCAGTGTCAGCTGAGTTAGGATTAGAGATGCATCAAATGGATGTAGTAACAGCTTACTTGAATGGTACTCTCGAAGAAGATGTATTCATGGAAATACCAGATAAACTATCAGATGTCTTAGAAAGTGTACTAGCAAACCAAAATATTGGATCAAAAAGAAATATTATAAGAGATAAGAATATACTTCATACAGCTAAACGCTGGAACGAAGCATTGAATGAGTGTGAGAATAATGTGTGTTTGTTAAAGAAGTCTTTGTATGGTTTGCGTCAATCAGGATTACAGTGGCATAAAAAGTTAGTAGGAAGGTTGAAGAATATTGGTTTTGAAGCATTACCACAAGAACCTTGTGTGTTTGTTGCGCAAAGGGATGAAAAAATGATGTTAATTGCTATTTATGTAGATGACATTATCCTAGCTACTAATGATGAGGTGTGGTTGCATGATGTTAAGCGTAAGTTATCTAATGCCTTTGAAATGAAGGATATGGGAAAAATCAGTACTTGTTTGGGTATCGAATTTTCACGTGATAAGGAGCATAGAGTGTATTTAAAGCAAGGTGCGTATATAGATAAAGTATTAGAGCGTTATGGTATGAGTGATTGTAAACCTATATCAACACCTATGGATGTGAACGTTAAACTAGAAAAACCCAACAGTGTAAACAATGATGTTATGAGTCAGTACCCTTACCAGAACCTTATAGGTGCCCTTATGTATTTGGCTGTATCTACCAGACCGGATATAGCTTATACTGTAAATTATTTAAGCCAATTTAACACTAATTATGATGTACAGCATTGGAAGGCAGCTAAGCGAGTGTTGAGGTATTTGAAAGGTACATCAACTTTCGGCTTAATGTATGAGAGGACAGGTGTACCATTGTTTGGTGTAGTTGATGCAGACTGGGGTGCAAATACGATTGATCGAAGGTCATATTCCGGTTTTGCATTTATTTTAGCAGGTGCCCCAATTACCTGGGAAGCACGAAAACAGCGTACCGTTGCATTATCGAGCACAGAAGCAGAGTACTTGGCGCTTTCTGAAGCAACTAAGGAAGCTATGTATCTCAGAAATGTGGTAAATAATGTTGGTGTAAAATGTGGTTGTGTGACATTATTTAATGACAACCAGGGTGCTATGAAGCTTGCACAGAGTAGAAGCTATCATTCTCGCACTAAGCATATTGATGTTAGACACCATTTTGTTCGAGATATGTGTGAACAGGGTGTGATTGATTTGAAATACTTGAGTACAGACAAAATGCCTGCTGATATTTTGACCAAGGGCTTGTGTGGGATGAAGCATTATGAATGCATGAACAATTTAGGAATGATGGAATAA

Protein

MFKINYVLLIFVLSNCVNCNVYIGNGKMKQLYAWKQLGYDFNGTKYIKDADRIRSPGAIHFVQELGDSEKFFIQYNNVPTGIKFVGDLLFLTVPRRRFGIPSTLNYIDRRHSKKLDPLLKPYPNPEAVSSLTSVYRTAIDSCARLWMVDTGLLEVPGARRQVKPPAILAYNWLTHKLDFRYELDPKVLVNERTPGGLTSLTIDVEPTACGEAHAYITDLATNGLIVFSLGARAFWRIDHPSFVHGEKALNFTVAGNVISWKDGLFSIALSDVGGKRLAYYHPMVSTHEYAIDTAVLKNGGADFDKEYKVLGSRGPLSQSGIHSHHAASSVLFYANVARDGIVCWNTKKPLVEENVALIVQDREKLLYITDLAIRQNELYVLVNKMPVFVFSMLNKEEYNFFMHRNYKMTSNIKIDRLTGDNYDTWKIHMRAILKKNDLWEYVSGKIPKPIHSDSKYSEWNKMDGKAESDILLAVSPSELIALDGLDSSKAIWDKLKSMYESSGPARKASLLKRLVLKRMPEDGDIRKHISDFFDCVKKLKEIGLIVIDELLAILLLYSLPDSFSMFRTAMESRDDLPSTDILKVKIIEDYEGRKNLNLANGKTTKISGSGKVSIMVDTGSEKRHVDIKKVFYVSDLRTNLLSVAKMTDHGFEVRFNKNYAIVIDDNNKVHMRADRVGNLYHVRMSQDDVNNVEMVKKPIDMWHERLGHLNERDLKAMAKNGLVHGLSLKDNEKLSECEICISEKQTCTPFSKGSEDRTSELLEIVHTDVCGPMRQQSMGGKKYFVTFIDDKSRWCEVYFIANKSDVLQVFKDYKAYVEKLTGKKIKNLQSDNGREYINKDFDDFLKKEGIRRRLTAPYTPQQNGISERKNRTLLEMARCMMRQAGSPPVFWAEAINTANYIRNRCPTAALDGQIPFTLWKRKKPTVIYMRLFGSKAYYKNKGTQKGKFELSSELGIFMGYDTESKAYRIHDPKTRRIVISRDVKFMNETAFCHEYKEIRNDEEESFDNSKIVVELIGHDQKKENRKTNPMRGRGRPRIVRTGLVGRPRKEYKPATISTESETESEYEVDNEETTAGIAIIEPKTWKEIEKTDDEPEWRRALEDEYLAQLKNVTWEIVPRPKNRKVIGSRFVFQTKNTGKKVRLVAKGCSQRPGEDIYETSSPVVRSSSVRLIAAVSAELGLEMHQMDVVTAYLNGTLEEDVFMEIPDKLSDVLESVLANQNIGSKRNIIRDKNILHTAKRWNEALNECENNVCLLKKSLYGLRQSGLQWHKKLVGRLKNIGFEALPQEPCVFVAQRDEKMMLIAIYVDDIILATNDEVWLHDVKRKLSNAFEMKDMGKISTCLGIEFSRDKEHRVYLKQGAYIDKVLERYGMSDCKPISTPMDVNVKLEKPNSVNNDVMSQYPYQNLIGALMYLAVSTRPDIAYTVNYLSQFNTNYDVQHWKAAKRVLRYLKGTSTFGLMYERTGVPLFGVVDADWGANTIDRRSYSGFAFILAGAPITWEARKQRTVALSSTEAEYLALSEATKEAMYLRNVVNNVGVKCGCVTLFNDNQGAMKLAQSRSYHSRTKHIDVRHHFVRDMCEQGVIDLKYLSTDKMPADILTKGLCGMKHYECMNNLGMME

Uniprot

A0A2N9FZX9 A0A2N9HL59

EMBL

OIVN01001336 SPC92838.1 OIVN01003620 SPD12483.1

Pfam

PF13976   gag_pre-integrs        + More
PF00665   rve
PF07727   RVT_2
PF00098   zf-CCHC

Interpro

IPR012337   RNaseH-like_sf        + More
IPR013103   RVT_2
IPR001584   Integrase_cat-core
IPR039537   Retrotran_Ty1/copia-like
IPR025724   GAG-pre-integrase_dom
IPR036397   RNaseH_sf
IPR001878   Znf_CCHC
IPR036875   Znf_CCHC_sf

SUPFAM

SSF53098 SSF53098 + More
SSF57756 SSF57756

Gene 3D

3.30.420.10

ProteinModelPortal

A0A2N9FZX9 A0A2N9HL59

PDB

3Q6T E-value=2.16321e-28, Score=319

KEGG

101746789 K22203 dopachrome tautomerase [EC:5.3.3.12] | (RefSeq) protein yellow-like

PATHWAY

00350 Tyrosine metabolism - Bombyx mori (domestic silkworm)
01100 Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0003676 GO:0000943 GO:0015074 GO:0008270 GO:0020037 GO:0005874 GO:0007017 GO:0004559 GO:0006013 GO:0015923 GO:0005634 GO:0006260

PANTHER

PTHR11439

SignalP

Position: 1 - 19, Likelihood: 0.992045

Length:

1620

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

11.3633399999999

Exp number, first 60 AAs:

10.96563

Total prob of N-in:

0.54275

POSSIBLE N-term signal

sequence

outside

1 - 1620

Pi

25.51381

Theta

182.791099

Tajima's D

1.301269

CLR

1.8635

CSRT

0.736563171841408

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree