SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06142
Annotation
endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 1.183 PlasmaMembrane   Reliability : 1.43
 

Sequence

CDS
ATGGCGCAGCCTGCCCTACTGTTTCTGACGGAGACGCAGATATCAGCTCCGGATGAAACCTCGTATCTTGAATACCCCGGCTACGTATTGGAGCACAACTTCCTGCGTAAAGCCGGGGTGTGTGTATTCGTTCGGGCTGATGTCTGTTGTCGCCGTCTACGAGGCCTCGAACAACGGGACCTGTCCCTCTTGTGGCTGCGCGTGGATCACGGGGGTTGTACTCGAATCTACGCCTGCCTGTACAGGTCCCACAGCAGTGATGCAGGTTCAGCTCTGATTGAGCATGTGCAAGAGGGGACTAACCGCGTACTTGAGCAGTACCCATCTGCGGCGGTGGTGGTCCTTGGAGACTTTAACACTCACCACCAAGAGTGGTTGGGGTCCAGAGCCACTGACCTCCCGGGTCGGACTGCCTACGATTTCGCCTTGGCCTACGGCTTTTCCCAGCTGGTGACACAGCCCACCCGTGTCCTAGATATCGAGAGGCACGAACCTTCTCAGTTGGACCTTCTGCTGACCACGGATCCGGCTAGATACAGTGTGGTGGTCGACGCTCCACTTGGATCGTCTGATCACTGCCTTATCCATGCTGTTGTACCACTCTCGTCGATACCTGGTCGTCGAACGACGACCAGGTATTGGAAGGAAACGTCGAAGGATTTGGAAGTATATGTCAGCAGATTGGGATGGATTGGGGGCGGTTCTGCTTTTCCTCTGCTGATCCTGATGTCTGTGCGGACCGTCTTAAAGACGTGGTGCTCCAGGGGATGGAATTGTTTATTCCCTCCTCTGAGGTGCCCGTTGGGGGTCGCAGTAAACCCTGGTATAACAATGTCAGCAGGGATGCTGTACACCTCAAGCGGTCCGCATACGTGGTATGGGATAATGCCAGGAGACGTAAAGGATCCTAACATCTCAGAGGAAAGGCGGAAATATAACGCCGCTTCCAGGTCCTACAAGAAGGTTATTGCCAAGGCGAGCTCGGAGTACGTTGCTAGAGTTGGCGAGCGACTAAATAGCTATCCCTCTGGGAGCCGTGCTTTTTGGTCGCTCGCCAAAGCTGCAGAAGGAAACTTTTGCAGGTCTAGTCTCCCACCACTGCGCAAGTCCGATGACAGTTTGGCCCATAGTGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACCGTGGACGACGGGGGTGCCACACCACCGAACATCCCCCGGTGTGATAGCTCCCTGCCTAAGATCTGCTTCACGCAGTGTGCAGTCAGGCGGGAGCTCCGACTCCTGGACGTCCATAAGTCGAGTGGGCCAGACGGCATCCCTGCAGTGGTTCTGAAAACGTGCGCCCCTGAGCTGACGCCTGCGCTAACGCGTTTGTATCGCCTCTCTTATTGCACTAAAAGGGTTCCGTCTTCATGGAAGACCGCCCACGTCCACCTTATCCCCAAGAAGGGTGACCGGTTGGACCCATCGAGTTATAGGCCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGCAGCGAATAATAAATATACAACTCCTGAAGTATCTAAAGGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTAATATCGCGAAGGCCTTCGACGGGGTCTGGCATAGGGCACTTCTATCGAAGTTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGCTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCAGTGCTCTCCCCCACGCTTTTCATCCTTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCAGAATGGGGTGAATTGAACTTGGTTCAATTCAAACCGACAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACATTTCGGGCGATGTCCAATTTCGGAGTCATTTGGAAGGCAAAACCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGTGAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTCTATAAAGCACAAGTCCGGCCTCGCGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAAGAGAGCCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGCTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGCATGTTCCATGGAAAGTGCTCTGAGGAATTGTTCGAGATGATACCAACGTCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGTTCTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCAGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAA
Protein
MAQPALLFLTETQISAPDETSYLEYPGYVLEHNFLRKAGVCVFVRADVCCRRLRGLEQRDLSLLWLRVDHGGCTRIYACLYRSHSSDAGSALIEHVQEGTNRVLEQYPSAAVVVLGDFNTHHQEWLGSRATDLPGRTAYDFALAYGFSQLVTQPTRVLDIERHEPSQLDLLLTTDPARYSVVVDAPLGSSDHCLIHAVVPLSSIPGRRTTTRYWKETSKDLEVYVSRLGWIGGGSAFPLLILMSVRTVLKTWCSRGWNCLFPPLRCPLGVAVNPGITMSAGMLYTSSGPHTWYGIMPGDVKDPNISEERRKYNAASRSYKKVIAKASSEYVARVGERLNSYPSGSRAFWSLAKAAEGNFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGATPPNIPRCDSSLPKICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCTKRVPSSWKTAHVHLIPKKGDRLDPSSYRPIAITSLLSKVMQRIINIQLLKYLKDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLNIAKAFDGVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILLSRSVVQERRSKLVSEVENSLGRVSEWGELNLVQFKPTKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISGDVQFRSHLEGKTKLASKMLGVLNRVKRYFTPGQRLLLYKAQVRPREYCSHLWAGAPKYQLLPFDSIQKRAVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGKCSEELFEMIPTSRFYHRTARHRSRVHPYYLEPLRSSTVRFQSSFCHVPSGYGMSSPPRCFQSAMTCPSSNEACGEY

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00002   7tm_2
PF04939   RRS1
PF02460   Patched
PF00096   zf-C2H2
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000832   GPCR_2_secretin-like       
IPR017981   GPCR_2-like       
IPR007023   Ribosom_reg       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57667   SSF57667       
Gene 3D
PDB
6AR3     E-value=0.000392996,     Score=107

Ontologies

Topology

Length:
893
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.88285
Exp number, first 60 AAs:
0.00047
Total prob of N-in:
0.01176
outside
1  -  893
 
 

Population Genetic Test Statistics

Pi
40.83393
Theta
34.281188
Tajima's D
0
CLR
0.098666
CSRT
0.365831708414579
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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