Silkworm Genome Informatics Database

Gene

KWMTBOMO06141

Annotation

PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]

Location

Bomo_Chr11(+):1128094-1133548 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.508 Nuclear Reliability : 2.057

CDS

ATGCCTTTAACTAGAAATCAAGATCGCCAGCAACGTCGCGAAGACGACGTTATTCCTGCTGCAGATGCAAATGCCAACGAAAATCACGAGGAGCATGATAGCCCCCATGATCGCCCCCACGCCGAATCACGTAGCAACAATTCTACGTTCAACTTGGATGATGTTTCAGCGTTGATGGCCTCGCTGCAACGTTCGCAGGCCGAAACACTTAAGAACATTATGTCGTACGTGATGGAACAAAGATCGTCGACTCCGGCACCTCCGCCGATGCCCCCAGTGAACGTAGATGGTACCTTGGCGCGTTGCAGAGCTTCTTTCAGCGGTGCACCTGGTGAATCTGTTGAGGCCTTTATAGATGCAATTGAAAGCTATACAGAATGCGTTCAAGTATCTGACGCTAACATCATACGAGGCCTAGCCATGCTTTTGTCTGCTGATGCAGCTACGTGGTGGCTAGGATTAAAGCATCACATCTCCACTTGGAACGAAGCCAAAGAAAATTTAATATATGCATATGGCACCCGCCTTCCACCACATAGAATATATTTGGAAATATTTGCTTCCCCGCAGGATAAAGAAAACACAGACAAGTTTGTTGCTCGTATTCGAGCGCTTATGGCAAAGCTACCGCGGGATGATATTACTGAAAAAGTACAACTTGATATGATATACGGGTTGCTTCATAATAGAATACGCACAAGATTGCGCCGTGAAGAAATCACATCTTTCAATTCATTATTAAACCATGCTCGGAATATAGAAGATTCGATAGAGGAGACTCAATCGAGACCAGTGTCGTCCACTAGTGGTGTGCGTTCGATCCGTGCCCAGCCGGCCCAGGCTGCGAGTCGGCCTGAACCGTGCGCCGCTCGTGTGAGTGCCCCGGCGCCGCGCGCGCGCTTTCCAAACTCCGCCGCGGCCGTCGTGCCCGCCACCGCTGTGCCTGTCGCTGTCGCCCAGCCTGCCGCTGCCACGCCTGCCGCTGCTGTGCCAGGTTCTGCAGAGCAATTCGTAACCACGAAGAAACAGCGTCCAGTGTGCTCCTACTGCAAACGGTTTGGACATGCACGGGAACAGTGCCGTAAGTTAAACAACCGAGCGTCCGTGTACGACCGTGAGAGTGATGATAGGTATTTGCATTTACGGCCTATTTTCAAAATTCAAGTTCTCGGTAAACAGGGTACTGCACTTATAGATACAGCAGCTAAGCATTGTATTGCTGGTCACACGCTGTATGCTCTCCTTCTGCATAAGGGTCACCCTCTTACTCCCTCCACTAGGCGAGTCAAACTTGCTGATGGGCATGTTCGGAATATGGATGTATTGACAACCATATTACCAGTGAGGTTAGAACACATAGTGATTAATATTCCATTTATAATCTTCCCTGATTCTAATGATAATGAAACTTTACTGGGTATTGATTTTATTAATGCTGCCAAAGTTATTATTGATTTTCATCGTCATGAATGGTATTTTAGTACTGATGCTAAGGTGCATTATAAATTACTTTTTGAACCTATGTCTCGTGGTGTGTGCATAGCCTCTACTAACATGCTTCGGGATGATGAAGGCATGCACTTGCAATCAGCTGAGCGCCAAGCATTATCTGAGTTCCTTATTCGGCATGAAAGTATTTTTACAGCAGGGGGAGGTCCGACACCATTCATAGAACATTGCATAGACACCGGAGATCACCCCCCGATAGCTGTGCCGCCCTATCGCCTTAACCCTTCCAAGAAGGAGACGATGAAGAATGAAATAGAGAAGATGCTGGCAGATGACATCATTGAAGAGTGCGAATCCGCCTGGTGCTCTCCTGCATTGATGATACCGAAGTCCAATGGTAATGTAAGATTCTGCGTGGATTACAGGCGCTTAAATGAAGTAACCAAATCGGATACTTACCCACTCCCACGCATTGATGATCTTCTCCAGAGTACGAAGAAGAATTGTTACATGACCACAATAGACCTTCGTTCTTCATATTGGCAAGTTATGGTCCGAGAAGCAGACAGAGACAAAACAGCTTTTGTCTGCCCCCTAGGCACTTACCGTTTTAAAAGAATGCCGTTCGGCTTGAAGAATGCGCCGGCGACTTTCCAAAGGCTTATTGATCGTCTACGCTCCTGTGCTGCTTTGAAGGATGTTACAGTACTTGCTTATCTAGACGATTTGTTAATTATTTCAGAAGGATTCCAGCAACACCTACAAGACCTGGAAGCTGTTTTTAGACGTCTGTCTGAATTTAAACTTCACGTAAACAGAGAGAAGTGCACTTTTGCCAAAGAAAGGGTCCGTTATCTGGGCCACGTCATCACTCCAGACGGTGTGTCTCCTGACCCTGAGAAGGTCAGTGCTGTCCTTAATATGCTGGAACCATCTAACCTAAAACATTTAAGAACTTTTCTCCAAACATGCTCTTGGTTCAGGAAGTTTATTCCAAACTTTTCAAAGATAGCAGAACCGCTTACTCGACTGACCAAGAAGAATTACACATGGAGCTGGGGACCTGAACAAACACAGGCATTCAAAGAATTGAAGCGTCTGCTGACCACGGCGCCCGTACTTGTTCAAGCGAATTTTAAACAACCCTTAGTACTGCGTACCGATGCGAGCAACTATGCACTTGGCGCAGTTTTAGCTCAAGGGGAAGGCAAGGACGAAAGACCTATCGAGTATGCTAGCCGCCTACTCACCGCAGCGGAGCGCAACTACTCTACTACAGAACGGGAAGCGCTTGCTGTAGTCTGGGCCGTGGAGCGTTTCAGGCCATACCTCGACGGCCAACCAATTATTATAGGCAGTGACCACCAACCCTTGCGTTGGTTGCTTTCTTTAAAGTCTCCTGCTGGTAGGTTGGTCCGTTGGGCGCTTAAACTCCAAGAATTTGACATCAGATTCGAGTACACCCCAGGAAAAGCTAACGTTGTCGCTGACACGTTAAGTAGACCGATCTGTTCCAACGAAACACAAAATAACTGCGGCATCTGTTCTGTCATTTGCGACCTGCCCACCAAGTCACCTACCCAGTTACGTCAAGACCAGTTGACTGATCCGGAAATACAGAAGATCGTCACAGAACTGGAAGGAGTGGATGAACTTGCTGCTAAAAGATGGTCAGAAAGAGGATTTCTAATGGAACAAGGTGTTTTATATCGACTTAATCCGGATTCTGATGCCGAGGCTCCACAATTAGTCATTCCTGCCCATCAAGTGACCGACGTTCTCAAAGAGCTTCACGATGCCCCTACCGCTGGACATGCAGGAATTGACCGGACTTACCAACAAGTCTCACGTCTGTTCTACTTCACAGGAATGAGAAGAATCATAACCGACTATGTAAAGGCATGTATCCATTGTCAACGCTATAAGGCTGCTAATACCAAGCCTCCAGGTCTATTGCAGACGCCGGTGATGAACCAGCGCGACGAGGTCTTGGCAGTTGATCTTTTCGGCCCGTTGCCACCTGGAAAACAGGGGGAGCGTTGGATCTTGCTAATAGAAGATACTGCTACGAGGTGGACAGAACTTTTCCCATTGAAGGAAGCTACTGCTGAGGCGTGTGCACATGTCCTCATAGAGGAGTATTTTATGAGATTTGGTCTTCCACGCCGACTAGTTTCTGATAATGGCGTACAATTTATTTCGGCAGTCATGCGTCAATGCATGTCCATCCTGGGGATAAAGCAAAACCTTATCCCTCTCTATCACCCAGAAGCAAACCCCGCCGAACGTAAAAACAGAGATCTTAAGACTTTATTAGCACAACTCGTGGAATGTGACCACACTTCCTGGCCAAACATGTTACCAGTGATTCGGTTCGCTCTTAATAACGCTAAATGTCGCACCACAGGTATGTCACCTGCTTACTTGTCATTTGGCAGAGAGATGAGGTCCCCCACAGAAGTCGCCCATGACCTTCGTGTTGTTCTAGACAAAGATAACTTTGTTCCCCAAATAACTCCCTATCTCAGGAAATTTGTTAACTCCTTTTCAGCGGTGCGCGAACGTGTAGAGACGCTTCAAGATAAAGCTAAAGGGTATGCTGATCGTTCGAGACGGCCCATTGAAACATTCAACGAAGGTGACATGGTTCTCATCAAATCACACGTCCTCAGTAAGAGCGCTAAGGGTCTTACTTCTAAGTTTGTTCCAAAACGCGATGGTCCGTATCGCATCGTTAAAAAGGTCAGCCCTACTACTTACCACGTCGCGCATGTTGACAAACCTGATGAAGTTTTAGGGAAATATCATGTGAACGATCTCACTCTATACCGTGAGAATCAGAGTGATGCTCTTCCGCGGCCGGTGATGCCTAAAAAGAAACGTGGTCGTCCCCCAAATAATGTTAAAACAGATTCTCGAGTTCCAGGGCATATGACGACACGGCATGCTGAACCATGTGCTGAAGCTCCACGTCTTTCTCCCGCAGCTGGTGGTATGGTTGGTCTTGCGCCTGTCCCTCAGCCCAGTAGTAATGAGATGCTAGTCCAGGAGCGAGGGCGTCCTCCAGGACTAGAGGGGGAGTATGTAGCAAACCGACCGGTACGTCACTCTCGCGGCCGTATGCCCGCTCGCTATACATAG

Protein

MPLTRNQDRQQRREDDVIPAADANANENHEEHDSPHDRPHAESRSNNSTFNLDDVSALMASLQRSQAETLKNIMSYVMEQRSSTPAPPPMPPVNVDGTLARCRASFSGAPGESVEAFIDAIESYTECVQVSDANIIRGLAMLLSADAATWWLGLKHHISTWNEAKENLIYAYGTRLPPHRIYLEIFASPQDKENTDKFVARIRALMAKLPRDDITEKVQLDMIYGLLHNRIRTRLRREEITSFNSLLNHARNIEDSIEETQSRPVSSTSGVRSIRAQPAQAASRPEPCAARVSAPAPRARFPNSAAAVVPATAVPVAVAQPAAATPAAAVPGSAEQFVTTKKQRPVCSYCKRFGHAREQCRKLNNRASVYDRESDDRYLHLRPIFKIQVLGKQGTALIDTAAKHCIAGHTLYALLLHKGHPLTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVINIPFIIFPDSNDNETLLGIDFINAAKVIIDFHRHEWYFSTDAKVHYKLLFEPMSRGVCIASTNMLRDDEGMHLQSAERQALSEFLIRHESIFTAGGGPTPFIEHCIDTGDHPPIAVPPYRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKSDTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFGLKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHVITPDGVSPDPEKVSAVLNMLEPSNLKHLRTFLQTCSWFRKFIPNFSKIAEPLTRLTKKNYTWSWGPEQTQAFKELKRLLTTAPVLVQANFKQPLVLRTDASNYALGAVLAQGEGKDERPIEYASRLLTAAERNYSTTEREALAVVWAVERFRPYLDGQPIIIGSDHQPLRWLLSLKSPAGRLVRWALKLQEFDIRFEYTPGKANVVADTLSRPICSNETQNNCGICSVICDLPTKSPTQLRQDQLTDPEIQKIVTELEGVDELAAKRWSERGFLMEQGVLYRLNPDSDAEAPQLVIPAHQVTDVLKELHDAPTAGHAGIDRTYQQVSRLFYFTGMRRIITDYVKACIHCQRYKAANTKPPGLLQTPVMNQRDEVLAVDLFGPLPPGKQGERWILLIEDTATRWTELFPLKEATAEACAHVLIEEYFMRFGLPRRLVSDNGVQFISAVMRQCMSILGIKQNLIPLYHPEANPAERKNRDLKTLLAQLVECDHTSWPNMLPVIRFALNNAKCRTTGMSPAYLSFGREMRSPTEVAHDLRVVLDKDNFVPQITPYLRKFVNSFSAVRERVETLQDKAKGYADRSRRPIETFNEGDMVLIKSHVLSKSAKGLTSKFVPKRDGPYRIVKKVSPTTYHVAHVDKPDEVLGKYHVNDLTLYRENQSDALPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRPPGLEGEYVANRPVRHSRGRMPARYT

Uniprot

A0A224XHC7 A0A1Y1NDK0 A0A3P9MP57

Pubmed

28004739 17554307

EMBL

GFTR01008566 JAW07860.1 GEZM01007731 JAV94970.1

Proteomes

UP000265180

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF17917   RT_RNaseH
PF00078   RVT_1
PF03732   Retrotrans_gag

Interpro

IPR012337   RNaseH-like_sf        + More
IPR001584   Integrase_cat-core
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR041373   RT_RNaseH
IPR000477   RT_dom
IPR021109   Peptidase_aspartic_dom_sf
IPR001878   Znf_CCHC
IPR005162   Retrotrans_gag_dom
IPR001969   Aspartic_peptidase_AS

SUPFAM

SSF50630 SSF50630 + More
SSF53098 SSF53098

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A224XHC7 A0A1Y1NDK0 A0A3P9MP57

PDB

4OL8 E-value=3.78244e-72, Score=696

KEGG

105841953 no KO assigned | (RefSeq) uncharacterized LOC105841953

GO

GO:0003676 GO:0015074 GO:0008270 GO:0005525 GO:0005874 GO:0007017 GO:0004559 GO:0006013 GO:0015923 GO:0005634 GO:0006260

Length:

1529

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.143520000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00718

outside

1 - 1529

Pi

365.71077

Theta

202.420232

Tajima's D

2.822402

CLR

0.612768

CSRT

0.967951602419879

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree