SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06141
Annotation
PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
Location in the cell
Mitochondrial   Reliability : 1.508 Nuclear   Reliability : 2.057
 

Sequence

CDS
ATGCCTTTAACTAGAAATCAAGATCGCCAGCAACGTCGCGAAGACGACGTTATTCCTGCTGCAGATGCAAATGCCAACGAAAATCACGAGGAGCATGATAGCCCCCATGATCGCCCCCACGCCGAATCACGTAGCAACAATTCTACGTTCAACTTGGATGATGTTTCAGCGTTGATGGCCTCGCTGCAACGTTCGCAGGCCGAAACACTTAAGAACATTATGTCGTACGTGATGGAACAAAGATCGTCGACTCCGGCACCTCCGCCGATGCCCCCAGTGAACGTAGATGGTACCTTGGCGCGTTGCAGAGCTTCTTTCAGCGGTGCACCTGGTGAATCTGTTGAGGCCTTTATAGATGCAATTGAAAGCTATACAGAATGCGTTCAAGTATCTGACGCTAACATCATACGAGGCCTAGCCATGCTTTTGTCTGCTGATGCAGCTACGTGGTGGCTAGGATTAAAGCATCACATCTCCACTTGGAACGAAGCCAAAGAAAATTTAATATATGCATATGGCACCCGCCTTCCACCACATAGAATATATTTGGAAATATTTGCTTCCCCGCAGGATAAAGAAAACACAGACAAGTTTGTTGCTCGTATTCGAGCGCTTATGGCAAAGCTACCGCGGGATGATATTACTGAAAAAGTACAACTTGATATGATATACGGGTTGCTTCATAATAGAATACGCACAAGATTGCGCCGTGAAGAAATCACATCTTTCAATTCATTATTAAACCATGCTCGGAATATAGAAGATTCGATAGAGGAGACTCAATCGAGACCAGTGTCGTCCACTAGTGGTGTGCGTTCGATCCGTGCCCAGCCGGCCCAGGCTGCGAGTCGGCCTGAACCGTGCGCCGCTCGTGTGAGTGCCCCGGCGCCGCGCGCGCGCTTTCCAAACTCCGCCGCGGCCGTCGTGCCCGCCACCGCTGTGCCTGTCGCTGTCGCCCAGCCTGCCGCTGCCACGCCTGCCGCTGCTGTGCCAGGTTCTGCAGAGCAATTCGTAACCACGAAGAAACAGCGTCCAGTGTGCTCCTACTGCAAACGGTTTGGACATGCACGGGAACAGTGCCGTAAGTTAAACAACCGAGCGTCCGTGTACGACCGTGAGAGTGATGATAGGTATTTGCATTTACGGCCTATTTTCAAAATTCAAGTTCTCGGTAAACAGGGTACTGCACTTATAGATACAGCAGCTAAGCATTGTATTGCTGGTCACACGCTGTATGCTCTCCTTCTGCATAAGGGTCACCCTCTTACTCCCTCCACTAGGCGAGTCAAACTTGCTGATGGGCATGTTCGGAATATGGATGTATTGACAACCATATTACCAGTGAGGTTAGAACACATAGTGATTAATATTCCATTTATAATCTTCCCTGATTCTAATGATAATGAAACTTTACTGGGTATTGATTTTATTAATGCTGCCAAAGTTATTATTGATTTTCATCGTCATGAATGGTATTTTAGTACTGATGCTAAGGTGCATTATAAATTACTTTTTGAACCTATGTCTCGTGGTGTGTGCATAGCCTCTACTAACATGCTTCGGGATGATGAAGGCATGCACTTGCAATCAGCTGAGCGCCAAGCATTATCTGAGTTCCTTATTCGGCATGAAAGTATTTTTACAGCAGGGGGAGGTCCGACACCATTCATAGAACATTGCATAGACACCGGAGATCACCCCCCGATAGCTGTGCCGCCCTATCGCCTTAACCCTTCCAAGAAGGAGACGATGAAGAATGAAATAGAGAAGATGCTGGCAGATGACATCATTGAAGAGTGCGAATCCGCCTGGTGCTCTCCTGCATTGATGATACCGAAGTCCAATGGTAATGTAAGATTCTGCGTGGATTACAGGCGCTTAAATGAAGTAACCAAATCGGATACTTACCCACTCCCACGCATTGATGATCTTCTCCAGAGTACGAAGAAGAATTGTTACATGACCACAATAGACCTTCGTTCTTCATATTGGCAAGTTATGGTCCGAGAAGCAGACAGAGACAAAACAGCTTTTGTCTGCCCCCTAGGCACTTACCGTTTTAAAAGAATGCCGTTCGGCTTGAAGAATGCGCCGGCGACTTTCCAAAGGCTTATTGATCGTCTACGCTCCTGTGCTGCTTTGAAGGATGTTACAGTACTTGCTTATCTAGACGATTTGTTAATTATTTCAGAAGGATTCCAGCAACACCTACAAGACCTGGAAGCTGTTTTTAGACGTCTGTCTGAATTTAAACTTCACGTAAACAGAGAGAAGTGCACTTTTGCCAAAGAAAGGGTCCGTTATCTGGGCCACGTCATCACTCCAGACGGTGTGTCTCCTGACCCTGAGAAGGTCAGTGCTGTCCTTAATATGCTGGAACCATCTAACCTAAAACATTTAAGAACTTTTCTCCAAACATGCTCTTGGTTCAGGAAGTTTATTCCAAACTTTTCAAAGATAGCAGAACCGCTTACTCGACTGACCAAGAAGAATTACACATGGAGCTGGGGACCTGAACAAACACAGGCATTCAAAGAATTGAAGCGTCTGCTGACCACGGCGCCCGTACTTGTTCAAGCGAATTTTAAACAACCCTTAGTACTGCGTACCGATGCGAGCAACTATGCACTTGGCGCAGTTTTAGCTCAAGGGGAAGGCAAGGACGAAAGACCTATCGAGTATGCTAGCCGCCTACTCACCGCAGCGGAGCGCAACTACTCTACTACAGAACGGGAAGCGCTTGCTGTAGTCTGGGCCGTGGAGCGTTTCAGGCCATACCTCGACGGCCAACCAATTATTATAGGCAGTGACCACCAACCCTTGCGTTGGTTGCTTTCTTTAAAGTCTCCTGCTGGTAGGTTGGTCCGTTGGGCGCTTAAACTCCAAGAATTTGACATCAGATTCGAGTACACCCCAGGAAAAGCTAACGTTGTCGCTGACACGTTAAGTAGACCGATCTGTTCCAACGAAACACAAAATAACTGCGGCATCTGTTCTGTCATTTGCGACCTGCCCACCAAGTCACCTACCCAGTTACGTCAAGACCAGTTGACTGATCCGGAAATACAGAAGATCGTCACAGAACTGGAAGGAGTGGATGAACTTGCTGCTAAAAGATGGTCAGAAAGAGGATTTCTAATGGAACAAGGTGTTTTATATCGACTTAATCCGGATTCTGATGCCGAGGCTCCACAATTAGTCATTCCTGCCCATCAAGTGACCGACGTTCTCAAAGAGCTTCACGATGCCCCTACCGCTGGACATGCAGGAATTGACCGGACTTACCAACAAGTCTCACGTCTGTTCTACTTCACAGGAATGAGAAGAATCATAACCGACTATGTAAAGGCATGTATCCATTGTCAACGCTATAAGGCTGCTAATACCAAGCCTCCAGGTCTATTGCAGACGCCGGTGATGAACCAGCGCGACGAGGTCTTGGCAGTTGATCTTTTCGGCCCGTTGCCACCTGGAAAACAGGGGGAGCGTTGGATCTTGCTAATAGAAGATACTGCTACGAGGTGGACAGAACTTTTCCCATTGAAGGAAGCTACTGCTGAGGCGTGTGCACATGTCCTCATAGAGGAGTATTTTATGAGATTTGGTCTTCCACGCCGACTAGTTTCTGATAATGGCGTACAATTTATTTCGGCAGTCATGCGTCAATGCATGTCCATCCTGGGGATAAAGCAAAACCTTATCCCTCTCTATCACCCAGAAGCAAACCCCGCCGAACGTAAAAACAGAGATCTTAAGACTTTATTAGCACAACTCGTGGAATGTGACCACACTTCCTGGCCAAACATGTTACCAGTGATTCGGTTCGCTCTTAATAACGCTAAATGTCGCACCACAGGTATGTCACCTGCTTACTTGTCATTTGGCAGAGAGATGAGGTCCCCCACAGAAGTCGCCCATGACCTTCGTGTTGTTCTAGACAAAGATAACTTTGTTCCCCAAATAACTCCCTATCTCAGGAAATTTGTTAACTCCTTTTCAGCGGTGCGCGAACGTGTAGAGACGCTTCAAGATAAAGCTAAAGGGTATGCTGATCGTTCGAGACGGCCCATTGAAACATTCAACGAAGGTGACATGGTTCTCATCAAATCACACGTCCTCAGTAAGAGCGCTAAGGGTCTTACTTCTAAGTTTGTTCCAAAACGCGATGGTCCGTATCGCATCGTTAAAAAGGTCAGCCCTACTACTTACCACGTCGCGCATGTTGACAAACCTGATGAAGTTTTAGGGAAATATCATGTGAACGATCTCACTCTATACCGTGAGAATCAGAGTGATGCTCTTCCGCGGCCGGTGATGCCTAAAAAGAAACGTGGTCGTCCCCCAAATAATGTTAAAACAGATTCTCGAGTTCCAGGGCATATGACGACACGGCATGCTGAACCATGTGCTGAAGCTCCACGTCTTTCTCCCGCAGCTGGTGGTATGGTTGGTCTTGCGCCTGTCCCTCAGCCCAGTAGTAATGAGATGCTAGTCCAGGAGCGAGGGCGTCCTCCAGGACTAGAGGGGGAGTATGTAGCAAACCGACCGGTACGTCACTCTCGCGGCCGTATGCCCGCTCGCTATACATAG
Protein
MPLTRNQDRQQRREDDVIPAADANANENHEEHDSPHDRPHAESRSNNSTFNLDDVSALMASLQRSQAETLKNIMSYVMEQRSSTPAPPPMPPVNVDGTLARCRASFSGAPGESVEAFIDAIESYTECVQVSDANIIRGLAMLLSADAATWWLGLKHHISTWNEAKENLIYAYGTRLPPHRIYLEIFASPQDKENTDKFVARIRALMAKLPRDDITEKVQLDMIYGLLHNRIRTRLRREEITSFNSLLNHARNIEDSIEETQSRPVSSTSGVRSIRAQPAQAASRPEPCAARVSAPAPRARFPNSAAAVVPATAVPVAVAQPAAATPAAAVPGSAEQFVTTKKQRPVCSYCKRFGHAREQCRKLNNRASVYDRESDDRYLHLRPIFKIQVLGKQGTALIDTAAKHCIAGHTLYALLLHKGHPLTPSTRRVKLADGHVRNMDVLTTILPVRLEHIVINIPFIIFPDSNDNETLLGIDFINAAKVIIDFHRHEWYFSTDAKVHYKLLFEPMSRGVCIASTNMLRDDEGMHLQSAERQALSEFLIRHESIFTAGGGPTPFIEHCIDTGDHPPIAVPPYRLNPSKKETMKNEIEKMLADDIIEECESAWCSPALMIPKSNGNVRFCVDYRRLNEVTKSDTYPLPRIDDLLQSTKKNCYMTTIDLRSSYWQVMVREADRDKTAFVCPLGTYRFKRMPFGLKNAPATFQRLIDRLRSCAALKDVTVLAYLDDLLIISEGFQQHLQDLEAVFRRLSEFKLHVNREKCTFAKERVRYLGHVITPDGVSPDPEKVSAVLNMLEPSNLKHLRTFLQTCSWFRKFIPNFSKIAEPLTRLTKKNYTWSWGPEQTQAFKELKRLLTTAPVLVQANFKQPLVLRTDASNYALGAVLAQGEGKDERPIEYASRLLTAAERNYSTTEREALAVVWAVERFRPYLDGQPIIIGSDHQPLRWLLSLKSPAGRLVRWALKLQEFDIRFEYTPGKANVVADTLSRPICSNETQNNCGICSVICDLPTKSPTQLRQDQLTDPEIQKIVTELEGVDELAAKRWSERGFLMEQGVLYRLNPDSDAEAPQLVIPAHQVTDVLKELHDAPTAGHAGIDRTYQQVSRLFYFTGMRRIITDYVKACIHCQRYKAANTKPPGLLQTPVMNQRDEVLAVDLFGPLPPGKQGERWILLIEDTATRWTELFPLKEATAEACAHVLIEEYFMRFGLPRRLVSDNGVQFISAVMRQCMSILGIKQNLIPLYHPEANPAERKNRDLKTLLAQLVECDHTSWPNMLPVIRFALNNAKCRTTGMSPAYLSFGREMRSPTEVAHDLRVVLDKDNFVPQITPYLRKFVNSFSAVRERVETLQDKAKGYADRSRRPIETFNEGDMVLIKSHVLSKSAKGLTSKFVPKRDGPYRIVKKVSPTTYHVAHVDKPDEVLGKYHVNDLTLYRENQSDALPRPVMPKKKRGRPPNNVKTDSRVPGHMTTRHAEPCAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRPPGLEGEYVANRPVRHSRGRMPARYT

Summary

Pfam
PF17921   Integrase_H2C2        + More
PF00665   rve
PF17917   RT_RNaseH
PF00078   RVT_1
PF03732   Retrotrans_gag
Interpro
IPR012337   RNaseH-like_sf        + More
IPR001584   Integrase_cat-core       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR041373   RT_RNaseH       
IPR000477   RT_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001878   Znf_CCHC       
IPR005162   Retrotrans_gag_dom       
IPR001969   Aspartic_peptidase_AS       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
Gene 3D
PDB
4OL8     E-value=3.78244e-72,     Score=696

Ontologies

Topology

Length:
1529
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.143520000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00718
outside
1  -  1529
 
 

Population Genetic Test Statistics

Pi
365.71077
Theta
202.420232
Tajima's D
2.822402
CLR
0.612768
CSRT
0.967951602419879
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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