Gene

KWMTBOMO06137

Annotation

PREDICTED:_transmembrane_protein_C5orf28_[Papilio_polytes]

Location

Bomo_Chr11(-):945473-946704      View in EpiBrowser

Full name

Transmembrane protein 267      

Location in the cell

PlasmaMembrane   Reliability : 4.585

CDS

ATGAGATTTAAATTTTTTTTATTCAATTTTTTACTCGTTAATACAACAATTATTGGAGATTACGTAGTTTTCAATTCAAAATATTCTGATAGCCAATTATTCCGAGCAATAGCGGACAGCATAGTGCATGCATCAATAGGATTTCTGTCATCATTGATTTATTTTACATATAACCACAATACGAGCGTTCCTATTCACATAAACGTTTTCATTTGCACTTTTGTATCTTCATTTATCGACGTCGACCATTTTATTGCCGCCAAATCAATTTACTTAAAGGATGCTCTGAACTTGAACCGCCGAGGTACCTTGCACTGTACCACCCTGTGGATACTGATTACACTACCCATGCTTCTGTACAGCATCATAATGAGACATCTGAATATCTACACGACAACATTAATGTTAATACTGGCATACTCATCACATCACATTCGAGACGGCAGCAGACGAGGCCTATGGATGTATCCGTTAGGTCACACGGAACCTTTGAACAAAACGGTATATTTATTTTTAACCATCACTATACCTAATCTATTAGGTTATGTTACTAATTGTTACAGTATTAATTTAATGAGAAACAGCGGTGGGGTTATACATTTGTGA

Protein

MRFKFFLFNFLLVNTTIIGDYVVFNSKYSDSQLFRAIADSIVHASIGFLSSLIYFTYNHNTSVPIHINVFICTFVSSFIDVDHFIAAKSIYLKDALNLNRRGTLHCTTLWILITLPMLLYSIIMRHLNIYTTTLMLILAYSSHHIRDGSRRGLWMYPLGHTEPLNKTVYLFLTITIPNLLGYVTNCYSINLMRNSGGVIHL

Keywords

Membrane   Transmembrane   Transmembrane helix   Complete proteome   Reference proteome  

Feature

chain  Transmembrane protein 267

Uniprot

A0A0L7L3U0   A0A212F1B5   A0A3S2NHE4   A0A2H1VW55   B4HTW3   A0A0J9RNK1   + More
Q9VZK9   A0A3B0JVY4   B4H5Q1   Q29EZ2   B4PH80   B3M7Z2   B3NFZ9   B4MLA0   A0A1W4XDQ7   B4KXT8   A0A1W4W2J3   B4MGX6   A0A0M4F1J5   B4IZ34   A0A1I8P8A3   A0A088AJ59   A0A195B966   A0A067QKU8   A0A232FLN7   E9ISU0   A0A067QVD1   K7J5E9   A0A2A3EJL5   E2ARR0   A0A0A9Y8C5   A0A154NYK9   A0A026W183   A0A0A1XAJ3   A0A195EV04   F4WP04   A0A139WAR6   A0A0L0CEZ9   A0A2R7X796   A0A0K8UDL8   A0A034VLC2   A0A0T6B5Z1   A0A1S3JMI2   A0A195E632   A0A0L7R7S7   B7Q8Z5   W8C3H3   V5H8B4   A0A336M3A8   A0A0K8R871   E0VJZ3   A0A151WRG3   R4WSP9   A0A099YZU5   B3RU30   A0A1B6CQP7   A0A1L8HRT8   F7EDQ7   A0A2C9JKG8   A0A1U7UGH2   A0A1S2ZDF2   A0A3M6UGX6   A0A369RR88   A0A2R5L8R3   A0A1U7R7U8   L5LJU9   A0A2K5CXF7   S7PIL2   A0A1A9UTT3   A0A1I8N9R9   A0A2K6GJP1   A0A195CMA3   G1PHH9   A0A2Y9E7D1   A0A1Z5L9B9   A0A0P7U4W5   G1RHI4   G3USW5   G1SX19   D3TPR0   A0A2K5JEU5   A0A1L8I374   H0WZW3   Q6DED9   V8PHP7   G1KKJ1   D3TPQ9   A0A1A9ZG40   A0A096N1M3   G3MP84   G3QQB7   F7A5F5   A0A093RFG6   Q8VDR5   K7GK12   A0A2K5ZYV9   A0A2K5P806   A0A2Y9SYG4   H3BJ86  

Pubmed

26227816    22118469    17994087    22936249    10731132    12537568    + More
12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    17550304    24845553    28648823    21282665    20075255    20798317    25401762    26823975    24508170    30249741    25830018    21719571    18362917    19820115    26108605    25348373    24495485    25765539    20566863    23691247    18719581    27762356    18464734    15562597    30382153    30042472    25315136    21993624    28528879    20838655    20353571    24297900    22216098    22398555    20431018    16141072    15489334    17381049    19468303   

EMBL

JTDY01003200    KOB69964.1    AGBW02010907    OWR47532.1    RSAL01000098    RVE47646.1    + More
ODYU01004760    SOQ44986.1    CH480817    EDW50384.1    CM002912    KMY97448.1    AE014296    BT099897    AAF47811.1    ACX30059.1    OUUW01000009    SPP85233.1    CH479211    EDW33103.1    CH379070    EAL29917.3    CM000159    EDW93317.2    CH902618    EDV39900.2    CH954178    EDV50828.2    CH963847    EDW73358.2    CH933809    EDW17610.2    CH940752    EDW62912.2    CP012525    ALC44820.1    CH916366    EDV95556.1    KQ976542    KYM81083.1    KK853210    KDR09809.1    NNAY01000065    OXU31368.1    GL765434    EFZ16368.1    KDR09808.1    KZ288244    PBC31221.1    GL442166    EFN63868.1    GBHO01014287    GBRD01002540    GDHC01004669    JAG29317.1    JAG63281.1    JAQ13960.1    KQ434777    KZC04164.1    KK107499    QOIP01000003    EZA49773.1    RLU25253.1    GBXI01011763    GBXI01006150    JAD02529.1    JAD08142.1    KQ981965    KYN31714.1    GL888243    EGI63935.1    KQ971380    KYB24990.1    JRES01000577    KNC30064.1    KK858185    PTY27668.1    GDHF01031731    GDHF01030753    GDHF01027638    GDHF01013016    JAI20583.1    JAI21561.1    JAI24676.1    JAI39298.1    GAKP01016033    GAKP01016030    JAC42922.1    LJIG01009593    KRT82770.1    KQ979608    KYN20342.1    KQ414637    KOC66932.1    ABJB010506498    DS886620    EEC15317.1    GAMC01006075    GAMC01006074    JAC00482.1    GANP01013686    JAB70782.1    UFQT01000494    SSX24734.1    GADI01006446    JAA67362.1    DS235235    EEB13699.1    KQ982807    KYQ50391.1    AK417737    BAN20952.1    KL887004    KGL74408.1    DS985244    EDV25271.1    GEDC01021439    JAS15859.1    CM004467    OCT98752.1    RCHS01001580    RMX52764.1    NOWV01000263    RDD37207.1    GGLE01001681    MBY05807.1    KB111427    ELK25898.1    KE163046    EPQ10633.1    KQ977574    KYN01861.1    AAPE02030234    GFJQ02003001    JAW03969.1    JARO02004087    KPP69181.1    ADFV01102950    ADFV01102951    AAGW02030606    CCAG010005148    EZ423412    ADD19688.1    CM004466    OCU02558.1    AAQR03097179    AAQR03097180    BC077184    AZIM01000079    ETE73533.1    EZ423411    ADD19687.1    AHZZ02028992    JO843685    AEO35302.1    CABD030105311    CABD030105312    AAMC01018627    KL443304    KFW94757.1    AK050607    BC021422    BC103784    AGCU01204963    AGCU01204964    AGCU01204965    AGCU01204966    AC163689    AC241593   

Proteomes

UP000037510    UP000007151    UP000283053    UP000001292    UP000000803    UP000268350    + More
UP000008744    UP000001819    UP000002282    UP000007801    UP000008711    UP000007798    UP000192223    UP000009192    UP000192221    UP000008792    UP000092553    UP000001070    UP000095300    UP000005203    UP000078540    UP000027135    UP000215335    UP000002358    UP000242457    UP000000311    UP000076502    UP000053097    UP000279307    UP000078541    UP000007755    UP000007266    UP000037069    UP000085678    UP000078492    UP000053825    UP000001555    UP000009046    UP000075809    UP000053641    UP000009022    UP000186698    UP000002279    UP000076420    UP000189704    UP000079721    UP000275408    UP000253843    UP000189706    UP000233020    UP000078200    UP000095301    UP000233160    UP000078542    UP000001074    UP000248480    UP000034805    UP000192224    UP000001073    UP000001645    UP000001811    UP000092444    UP000233080    UP000005225    UP000001646    UP000092445    UP000028761    UP000001519    UP000008143    UP000000589    UP000007267    UP000233140    UP000233060    UP000248484   

PRIDE

Q9VZK9    Q8VDR5   

Pfam

PF04307   YdjM

Interpro

IPR007404   YdjM-like        + More
IPR026572   TMEM267       

ProteinModelPortal

A0A0L7L3U0   A0A212F1B5   A0A3S2NHE4   A0A2H1VW55   B4HTW3   A0A0J9RNK1   + More
Q9VZK9   A0A3B0JVY4   B4H5Q1   Q29EZ2   B4PH80   B3M7Z2   B3NFZ9   B4MLA0   A0A1W4XDQ7   B4KXT8   A0A1W4W2J3   B4MGX6   A0A0M4F1J5   B4IZ34   A0A1I8P8A3   A0A088AJ59   A0A195B966   A0A067QKU8   A0A232FLN7   E9ISU0   A0A067QVD1   K7J5E9   A0A2A3EJL5   E2ARR0   A0A0A9Y8C5   A0A154NYK9   A0A026W183   A0A0A1XAJ3   A0A195EV04   F4WP04   A0A139WAR6   A0A0L0CEZ9   A0A2R7X796   A0A0K8UDL8   A0A034VLC2   A0A0T6B5Z1   A0A1S3JMI2   A0A195E632   A0A0L7R7S7   B7Q8Z5   W8C3H3   V5H8B4   A0A336M3A8   A0A0K8R871   E0VJZ3   A0A151WRG3   R4WSP9   A0A099YZU5   B3RU30   A0A1B6CQP7   A0A1L8HRT8   F7EDQ7   A0A2C9JKG8   A0A1U7UGH2   A0A1S2ZDF2   A0A3M6UGX6   A0A369RR88   A0A2R5L8R3   A0A1U7R7U8   L5LJU9   A0A2K5CXF7   S7PIL2   A0A1A9UTT3   A0A1I8N9R9   A0A2K6GJP1   A0A195CMA3   G1PHH9   A0A2Y9E7D1   A0A1Z5L9B9   A0A0P7U4W5   G1RHI4   G3USW5   G1SX19   D3TPR0   A0A2K5JEU5   A0A1L8I374   H0WZW3   Q6DED9   V8PHP7   G1KKJ1   D3TPQ9   A0A1A9ZG40   A0A096N1M3   G3MP84   G3QQB7   F7A5F5   A0A093RFG6   Q8VDR5   K7GK12   A0A2K5ZYV9   A0A2K5P806   A0A2Y9SYG4   H3BJ86  

KEGG

101744735    no KO assigned | (RefSeq) transmembrane protein C5orf28 homolog

GO

GO:0016021  

PANTHER

PTHR13628  

Subcellular location

Membrane  

SignalP

Position:   1 - 19,         Likelihood:  0.552378

 

 

Length:

201

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

110.11957

Exp number, first 60 AAs:

38.64349

Total prob of N-in:

0.95680

POSSIBLE N-term signal

sequence

inside

1  -  4

TMhelix

5  -  24

outside

25  -  61

TMhelix

62  -  81

inside

82  -  101

TMhelix

102  -  124

outside

125  -  166

TMhelix

167  -  189

inside

190  -  201

 

 

Pi

201.956942

Theta

205.373782

Tajima's D

-0.025857

CLR

1.243371

CSRT

0.36333183340833

Interpretation

Uncertain