SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06134
Pre Gene Modal
BGIBMGA001744
Annotation
PREDICTED:_zinc_finger_protein_564-like_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.852
 

Sequence

CDS
ATGAGATGCTGTGTCACCGGTTGTAAGAATGATTCTAGGAATTTATCTAAATCTCAAGGAATCACTTTTCATGTGTTTCCGAGTGAGCCGTCTCTACGTGCAGCTTGGCTTCAGGTGTTATGTAAAGATGGATGGGAGCCTAAGGAGAGGAGTGCAGTGTGTTCAAAACACTTCCTAGCTGAAAACCTATATGAGACCCAGAGCGGTCTGCGTAAGGTCAAAGCCGGAGCAGTTCCATTTTTGGAAACAACAATGAGCTGCACATTCCGCGGTACTGAGACTTTAAAGGCGTGTCGAATATGCCTATTGACATGCGGGAGGTTCTACTCCTTACAAACTGAAGAGCTGAGGCAGGCCTATGAGAACCTAACGGGGATACAGGTGACGGAAGATGACGGTCTGCCTGTCCACCTGTGTCCAGAGTGCTCGGTGCGGCTGCTAAACGGAGACAGGTTCAGAAGGAGGGCGCTCCGGGCCAACTCGCTCCTGCTAGGGGTGCTTCGGAGTGACTATGTGCTGACCACAGACTCGATTAATAGGATAGACAGAGCCGCGGAGAAGCTAACCTCGAACCTGACTTGTGACGTAACGCATTGTGACGCGGACCCCGGGCTCGCCGCCCCCAGCTGCCGGGTCTACCTGCAGGATGACGCCGAGCTGGAGCCGGAGGAAACCAAGTACGACGTGCAGGGTGGTGACGTCACAGCTGACGTAGACACCCAGGAGTACGTGATCGTGAAGAGTGATCAGGTCGACGACGGGTTCTCGTCCGACGACAACCTGCCCTTGGAGGCCGCTAAGCTGAAGGTGAAACAGGAGAAGGTGAAGAAGAAGCCGAAGAAAGAGTCGAAGGAGCCGAAGGTGGACCGCAGGAGGAAGCCGTTCATGAACGCCGAGCTGAGCGACACGCTGTTCACGACCACGCAGCTCAGCGTCGAGGAGCAGGTCGCCGAGATACACAAGCGCAAGGAGGGCTCCAACTACCGCAACGGCGTCTTCAAGTGCGACGAGTGCTTCAAGGGGTTCCAGGACGCGGACGCGTACAGCAGCCACATGACGCGACACACAGACCAATGCGGCGACCACCAGTGCCTGGTCTGCCGGATCTACTTCAGGAACCAGCATGCGCTTCGGAAGCACATGACCGCGCACCACTCGAGCCGGTTCAGCTGCAAGCAGTGCCCCTTCGTCACCAACCACCGGCAGACGGCGCGCCTGCACGAGCGCTGGCACTGCGGCACCAAGTACCGCTGCCCGCACTGCCCCGAGGAGTTCGTTAAGTTCACAACCTACATGGGTCACCTTCGCATCAAACACCCCTCGGACTTCGTCTGCGAGCTCTGCGGCTACTGCTTCGTCAGTGCCAAGGGGATAATGCTGCACAAGCAGCTGAAGCACAGGCTGGAGGACGGCAAGGTGCCGGAGAAGGGTCCGTACTGCGAGCAGTGCGACGTGCGCTTCGTGTCCCCGGACGCTTACGACCGCCACATGATCGTCTCCGCCAAGCACAGCACAGGTTCAACAGCCACTAAACCGGTCCGGTTCCGTCGCGCAGATACGAAGCGCGCCGCCAACAAGGCGAAGAGCCGGCGGCCGAACGACGCGGCCCCGCGCGCCCGCCGCCCGCCCCCCGCGCCCGGCGCCAAGCCCGACGGACCCATACCCTGCGAACAGTGCGGCCTCCAGCTGGACGACCCGCGGGCCTACCACAAGCACTTCAGGCGGATGCACCCGGACAAGAACCGAACTAATTACCCGTCGATGAAGACGCCCTGCATGTGCGAGGTGTGCGGGCGGATGTTCCAGAGCCAGGCGCTGCTGAACGACCACCGCTGGGTGCACACCGGCGAGAAGCCGTTCAAGTGCGAGGTCTGCGACAAGACGTTCCGCATGCGGCAGCGGCTCATGACGCACCGCCGCGTGCACAGCCGCGACCGCGCCAGCTACGGCTGCGCGCTCTGCGGGAAGCACTTCTCCTCGCAGAGCAACAGGCAGAGGCACATGTTCATCCACACCGGCCTGAAGCCGTACAAGTGCGAGATGTGCGGCAAGGGCTTCAAGCACACGAGCGAGAAGCGCGCCCACATCACGTACGTGCACCTCAAGAAGCCCTGGCCGAAGCGCAGCCGGAGCAAGCGGCGGACGGACAACAGGACCGCCACACTGCAAGCTACGGACCCCCCGGAACTGGACATGGGGCAGCCGATATGGCCGAATTGCGAACAAAAACTAAATGAAATGAATCTAATCGAAGACAAACCTATGTATTATAATATTAAAATATAA
Protein
MRCCVTGCKNDSRNLSKSQGITFHVFPSEPSLRAAWLQVLCKDGWEPKERSAVCSKHFLAENLYETQSGLRKVKAGAVPFLETTMSCTFRGTETLKACRICLLTCGRFYSLQTEELRQAYENLTGIQVTEDDGLPVHLCPECSVRLLNGDRFRRRALRANSLLLGVLRSDYVLTTDSINRIDRAAEKLTSNLTCDVTHCDADPGLAAPSCRVYLQDDAELEPEETKYDVQGGDVTADVDTQEYVIVKSDQVDDGFSSDDNLPLEAAKLKVKQEKVKKKPKKESKEPKVDRRRKPFMNAELSDTLFTTTQLSVEEQVAEIHKRKEGSNYRNGVFKCDECFKGFQDADAYSSHMTRHTDQCGDHQCLVCRIYFRNQHALRKHMTAHHSSRFSCKQCPFVTNHRQTARLHERWHCGTKYRCPHCPEEFVKFTTYMGHLRIKHPSDFVCELCGYCFVSAKGIMLHKQLKHRLEDGKVPEKGPYCEQCDVRFVSPDAYDRHMIVSAKHSTGSTATKPVRFRRADTKRAANKAKSRRPNDAAPRARRPPPAPGAKPDGPIPCEQCGLQLDDPRAYHKHFRRMHPDKNRTNYPSMKTPCMCEVCGRMFQSQALLNDHRWVHTGEKPFKCEVCDKTFRMRQRLMTHRRVHSRDRASYGCALCGKHFSSQSNRQRHMFIHTGLKPYKCEMCGKGFKHTSEKRAHITYVHLKKPWPKRSRSKRRTDNRTATLQATDPPELDMGQPIWPNCEQKLNEMNLIEDKPMYYNIKI

Summary

Pfam
PF00096   zf-C2H2        + More
PF05485   THAP
PF07776   zf-AD
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR012934   Znf_AD       
IPR038441   THAP_Znf_sf       
IPR006612   THAP_Znf       
SUPFAM
SSF57667   SSF57667       
Gene 3D
PDB
5V3M     E-value=9.44597e-22,     Score=258

Ontologies

Topology

Length:
761
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02809
Exp number, first 60 AAs:
0.00635
Total prob of N-in:
0.00242
outside
1  -  761
 
 

Population Genetic Test Statistics

Pi
233.268948
Theta
158.847512
Tajima's D
0.958499
CLR
0.328009
CSRT
0.653817309134543
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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