SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06131
Pre Gene Modal
BGIBMGA001743
Annotation
PREDICTED:_zinc_finger_protein_271-like_isoform_X1_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.258
 

Sequence

CDS
ATGCGTTGTAGCGTGCCTAATTGTACCACGGACACGAAAGCCGACACGAAAAACTACACAGTCACATTTCACACGTTTCCGAAAAATGAAAGCCACCGTGCCGCCTGGATCGATGCTCTAGGTATGAAGGGCTGGTTGCCCAAAGACGGCAGCGCTATCTGCTCCGAGCACTTCTGGAAGGATGACTTTTATTTCACTAAAGGCGGTCTCAAGAAGGTGAAGAACGGTGCTGTACCTGTGACTCTGAATTCCGAGGCCGATCGCGACGGAGCCGATATATCGGATGTCTGCCGAATATGCTTGAACATTGGTGGCAAACTGTACGACATGGGAGCGTGCAAACTGGAGGAAATATACGAACAACTAACCGAGTACATTTTCACGGATGATGATCGAGTACCGAAGAGGTTGTGCTGGGAGTGCGCCCACAGACTGTCCTCGTGTCTGAAGTTCAAGAGGAAAGCTCTCAGCAGTCAAAAGCTGCTCGCGGACTTAATCGCGGCGAACAAATACGTCACATTAAAAGACGTATTGTGCGTTAATAGAGTTGAGAATGGATTGAGGAGTACGTTGGTACGGAAATCCTTTGAGCCGAACAGCCTGGATTACTTCTTGGACGAGACCTTTAGCGTCGTGAAGCTCAAGGAAGATGAAGCAGGGTCGGATGTGATCTCGGAACCGAACAGAGAAGCCGAGCTGTCCGCGGACAGCGCCGCCGAGGACCTCCACATCAAAGACGAGGCCTCGAACGAGATATTCTTCGAAGAGTACAACGTCGGCTTCTACGACTCCGACGATGATAAGGTTCTGAGCGAAGTGTATAAGGACGAGAAGGTGGCGAACTGTGACAGCAAAGAGACGTCGTCTAAAGTGAAAAAGGGGAGGAAGAGATTGAAGGTCCAGAAGAAGGGGGTCAGGAAGAGAGCCGGAGACGACAATCCCGACAACGTCACTAAGCGGTGA
Protein
MRCSVPNCTTDTKADTKNYTVTFHTFPKNESHRAAWIDALGMKGWLPKDGSAICSEHFWKDDFYFTKGGLKKVKNGAVPVTLNSEADRDGADISDVCRICLNIGGKLYDMGACKLEEIYEQLTEYIFTDDDRVPKRLCWECAHRLSSCLKFKRKALSSQKLLADLIAANKYVTLKDVLCVNRVENGLRSTLVRKSFEPNSLDYFLDETFSVVKLKEDEAGSDVISEPNREAELSADSAAEDLHIKDEASNEIFFEEYNVGFYDSDDDKVLSEVYKDEKVANCDSKETSSKVKKGRKRLKVQKKGVRKRAGDDNPDNVTKR

Summary

Pfam
PF07776   zf-AD        + More
PF00096   zf-C2H2
PF05485   THAP
Interpro
IPR012934   Znf_AD        + More
IPR036236   Znf_C2H2_sf       
IPR006612   THAP_Znf       
IPR013087   Znf_C2H2_type       
IPR038441   THAP_Znf_sf       
SUPFAM
SSF57667   SSF57667       
Gene 3D
PDB
2D8R     E-value=0.000263886,     Score=104

Ontologies

Topology

Length:
320
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0002
Exp number, first 60 AAs:
0
Total prob of N-in:
0.09630
outside
1  -  320
 
 

Population Genetic Test Statistics

Pi
21.157488
Theta
22.148217
Tajima's D
-0.975573
CLR
1.838985
CSRT
0.134293285335733
Interpretation
Uncertain
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