Gene

KWMTBOMO06126  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001686

Annotation

PREDICTED:_DNA-directed_RNA_polymerase_I_subunit_RPA49_[Papilio_machaon]

Location

Bomo_Chr11(-):790286-791454      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.488

CDS

ATGTCTGAGTTTTACATAGACTACGTGTGCCCTAAAGACGAGACGGAAAGGCATCCTGTGATCTTTAATTTTCAAAACGGCTACATAACGGATAATTTTAAGGACACGGAATGCACTATATTAAGAGATGAAATTACAAGCAAAAGGAACGTTGCTCTGGAGGTCTGCGACACTCTGTACGTCGGAGCGGAAGAACAAGAGGAGCTAGGCAAAACAATAATAATGGCGCGAAACAAAAAAACAGGGAAAGTTCGAATCATCGAAGTAGGTACTGTCGACTTAAAACCCTATTTGAAAGTCGATTTAGACAATTCACAGCTGATGGAAACGTCGAACTTGGATCTCAGTCGAAAATTCGGATCGAAAAAACATAAAAAAATCATGGAGCAAAGAGAAAAGTTGAAAGTTAATGTGCAAACAGTAACTGATCAAATGCAGAATGTTAGTCAAAACATTTCAGAGGACCAACTCGATTTGTCGAACTACAACAAAACGGATGAAAACTTCTACGTGCCTCCCATCGACAGGGAAGCCAAAAGCGTGGAACAGGTTTACGACCTAGACAAAATATTAACAGAAGACATGTTTGAAAAGGTTTACGAGGAAATGGAAAACACAGATTATATGAGTAATTTTAATGAATTTCTCAAAACGATCGTCAGTGAAAATATGCCTAAAAAGCATTTGGTCTTAGCTCTGTATGCAAATTCATTATTAAACATGTATGGAACGCTAATGAAAGATATCACGAAGAAGACCTATGTTGCCTGTCCTCATTCCGCATCATTGAACGACCATATACTAAAAAATTTCCTCAGCATCTCTAACAATAGGAAATTACGTACCCCCCAAATGAAGGATAAGTCTCTATGTCACGCTCTAGTCTTTGTATTGTTAATAAACAAATACAAATTCAATTTAGAAGATTTATGTAAGCAACTGAAGTTCACATCTAGAGTGGTAGCTACAAAAGTATCTGTCACAGGAGCGAGTATAATCACTGAAGGTAACAAGAAGGTCGTTCAATTGAAACTACCGATCAGCAAGCCGGCTTTGAGAAGACGTAGCAATAAGTTTTAA

Protein

MSEFYIDYVCPKDETERHPVIFNFQNGYITDNFKDTECTILRDEITSKRNVALEVCDTLYVGAEEQEELGKTIIMARNKKTGKVRIIEVGTVDLKPYLKVDLDNSQLMETSNLDLSRKFGSKKHKKIMEQREKLKVNVQTVTDQMQNVSQNISEDQLDLSNYNKTDENFYVPPIDREAKSVEQVYDLDKILTEDMFEKVYEEMENTDYMSNFNEFLKTIVSENMPKKHLVLALYANSLLNMYGTLMKDITKKTYVACPHSASLNDHILKNFLSISNNRKLRTPQMKDKSLCHALVFVLLINKYKFNLEDLCKQLKFTSRVVATKVSVTGASIITEGNKKVVQLKLPISKPALRRRSNKF

Similarity

Belongs to the peptidase S1 family.

Uniprot

H9IWQ4   A0A2W1BA37   A0A2A4JMA1   A0A2H1VUL7   A0A212F5H8   S4NX77   + More
A0A0L7KWJ9   A0A194Q4J1   A0A1E1W983   A0A194QPZ3   E2BIN0   E2ACR2   A0A0J7KLJ2   A0A026WDZ9   A0A0C9R1T9   K7J1K4   A0A1W4XLJ1   A0A2J7QUI8   F4W695   A0A151IEP6   A0A088ASN5   A0A195AW62   A0A2A3E151   A0A1Y1LQ89   A0A195DMN4   A0A195FJ41   A0A067RT28   A0A158P215   A0A139WFB4   N6TPW3   A0A2P8XPX4   A0A0A9ZHL7   A0A0P4VLL3   R4G870   A0A1B0CN27   T1HG57   A0A224XRQ9   A0A1L8DHW2   A0A1B6C0N5   A0A0V0GAE3   A0A1B6CIG8   A0A1B0DLJ6   A0A1B6GTW9   A0A1B6KU06   A0A1I8PN50   Q9VE94   A0A0A1WX26   B4IB66   B4QUG2   A0A0L0C6V1   A0A034WBP0   B4G5Y6   B5DWI8   B4N9C4   A0A0K8VD48   B5DUV6   A0A226ERP7   B3LWQ3   A0A0K2TY95   A0A1I8PMZ5   B3NZ74   A0A151WHQ1   A0A2S2NL98   A0A2L2Y794   A0A210QCZ3   A0A3B0K410   T2M6C7   B4PLA7   A0A1D2NAS9   A0A3Q0IK59   A0A0M5J973   A0A1W4UK86   W8CBG6   A0A2R7WWR1   J9K4Q5   B4JF32   A0A1A9ZXL9   A0A1I8MLZ2   A0A1A9VEP5   A0A0P5VM98   A0A0N8A1I1   A0A0P5T6S1   A0A0P5Q825   A0A1A9XZB6   A0A0P5LAL7   A0A0P4Y5P8   A0A0P5AZZ6   A0A2P6L4E4   U5EQP0   A0A0P5AVE5   A0A1A9W3X3   A0A224YXF6   G3MF44   A0A1E1XDB7  

Pubmed

19121390    28756777    22118469    23622113    26227816    26354079    + More
20798317    24508170    30249741    20075255    21719571    28004739    24845553    21347285    18362917    19820115    23537049    29403074    25401762    26823975    27129103    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25830018    17994087    26108605    25348373    15632085    26561354    28812685    24065732    17550304    27289101    24495485    25315136    28797301    22216098    28503490   

EMBL

BABH01021009    KZ150196    PZC72322.1    NWSH01000996    PCG73177.1    ODYU01004515    + More
SOQ44478.1    AGBW02010195    OWR48988.1    GAIX01009189    JAA83371.1    JTDY01005036    KOB67441.1    KQ459463    KPJ00462.1    GDQN01007633    JAT83421.1    KQ461181    KPJ07593.1    GL448516    EFN84477.1    GL438568    EFN68806.1    LBMM01005909    KMQ91104.1    KK107262    QOIP01000010    EZA53906.1    RLU17705.1    GBYB01001960    JAG71727.1    NEVH01010578    PNF32251.1    GL887707    EGI70230.1    KQ977858    KYM99324.1    KQ976731    KYM76270.1    KZ288466    PBC25428.1    GEZM01049776    JAV75854.1    KQ980724    KYN14092.1    KQ981523    KYN40423.1    KK852478    KDR22974.1    ADTU01006960    KQ971352    KYB26622.1    APGK01025893    APGK01025894    KB740605    KI209968    ENN80043.1    ERL96118.1    PYGN01001559    PSN34062.1    GBHO01001774    GBRD01001671    GDHC01016609    JAG41830.1    JAG64150.1    JAQ02020.1    GDKW01003265    JAI53330.1    GAHY01001487    JAA76023.1    AJWK01019709    ACPB03002065    GFTR01005296    JAW11130.1    GFDF01008119    JAV05965.1    GEDC01030469    JAS06829.1    GECL01001911    JAP04213.1    GEDC01024081    GEDC01007505    JAS13217.1    JAS29793.1    AJVK01036442    GECZ01003976    JAS65793.1    GEBQ01025096    JAT14881.1    AE014297    AY061173    AAF55533.1    AAL28721.1    GBXI01011324    GBXI01008536    JAD02968.1    JAD05756.1    CH480827    EDW44624.1    CM000364    EDX12462.1    JRES01000835    KNC27962.1    GAKP01007387    JAC51565.1    CH479179    EDW23918.1    CM000070    EDY67775.1    CH964232    EDW80557.1    GDHF01015445    JAI36869.1    CH674672    EDY71679.1    LNIX01000002    OXA60179.1    CH902617    EDV42691.1    HACA01013623    CDW30984.1    CH954181    EDV48616.1    KQ983112    KYQ47366.1    GGMR01005279    MBY17898.1    IAAA01016140    IAAA01016141    LAA04023.1    NEDP02004118    OWF46596.1    OUUW01000013    SPP88023.1    HAAD01001253    CDG67485.1    CM000160    EDW95889.1    LJIJ01000115    ODN02363.1    CP012526    ALC46348.1    GAMC01004811    JAC01745.1    KK855815    PTY23966.1    ABLF02034568    ABLF02034583    CH916369    EDV93313.1    GDIP01098098    JAM05617.1    GDIP01191689    JAJ31713.1    GDIP01134598    LRGB01002956    JAL69116.1    KZS05348.1    GDIQ01139490    JAL12236.1    GDIQ01177158    JAK74567.1    GDIP01233195    JAI90206.1    GDIP01191688    JAJ31714.1    MWRG01001903    PRD33451.1    GANO01004142    JAB55729.1    GDIP01193592    JAJ29810.1    GFPF01007314    MAA18460.1    JO840495    AEO32112.1    GFAC01002092    JAT97096.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000037510    UP000053268    UP000053240    + More
UP000008237    UP000000311    UP000036403    UP000053097    UP000279307    UP000002358    UP000192223    UP000235965    UP000007755    UP000078542    UP000005203    UP000078540    UP000242457    UP000078492    UP000078541    UP000027135    UP000005205    UP000007266    UP000019118    UP000030742    UP000245037    UP000092461    UP000015103    UP000092462    UP000095300    UP000000803    UP000001292    UP000000304    UP000037069    UP000008744    UP000001819    UP000007798    UP000198287    UP000007801    UP000008711    UP000075809    UP000242188    UP000268350    UP000002282    UP000094527    UP000079169    UP000092553    UP000192221    UP000007819    UP000001070    UP000092445    UP000095301    UP000078200    UP000076858    UP000092443    UP000091820   

PRIDE

H9IWQ4    Q9VE94   

Pfam

PF06870   RNA_pol_I_A49        + More
PF00096   zf-C2H2
PF00089   Trypsin
PF01329   Pterin_4a
PF00086   Thyroglobulin_1

Interpro

IPR009668   RNA_pol-assoc_fac_A49-like        + More
IPR001254   Trypsin_dom       
IPR036236   Znf_C2H2_sf       
IPR018114   TRYPSIN_HIS       
IPR001314   Peptidase_S1A       
IPR009003   Peptidase_S1_PA       
IPR013087   Znf_C2H2_type       
IPR036428   PCD_sf       
IPR001533   Pterin_deHydtase       
IPR000716   Thyroglobulin_1       
IPR036857   Thyroglobulin_1_sf       
IPR001810   F-box_dom       

SUPFAM

SSF50494   SSF50494        + More
SSF57667   SSF57667       
SSF55248   SSF55248       
SSF57610   SSF57610       

Gene 3D

3.30.1360.20     4.10.800.10    

CDD

cd00190  Tryp_SPc
cd00191  TY

ProteinModelPortal

H9IWQ4   A0A2W1BA37   A0A2A4JMA1   A0A2H1VUL7   A0A212F5H8   S4NX77   + More
A0A0L7KWJ9   A0A194Q4J1   A0A1E1W983   A0A194QPZ3   E2BIN0   E2ACR2   A0A0J7KLJ2   A0A026WDZ9   A0A0C9R1T9   K7J1K4   A0A1W4XLJ1   A0A2J7QUI8   F4W695   A0A151IEP6   A0A088ASN5   A0A195AW62   A0A2A3E151   A0A1Y1LQ89   A0A195DMN4   A0A195FJ41   A0A067RT28   A0A158P215   A0A139WFB4   N6TPW3   A0A2P8XPX4   A0A0A9ZHL7   A0A0P4VLL3   R4G870   A0A1B0CN27   T1HG57   A0A224XRQ9   A0A1L8DHW2   A0A1B6C0N5   A0A0V0GAE3   A0A1B6CIG8   A0A1B0DLJ6   A0A1B6GTW9   A0A1B6KU06   A0A1I8PN50   Q9VE94   A0A0A1WX26   B4IB66   B4QUG2   A0A0L0C6V1   A0A034WBP0   B4G5Y6   B5DWI8   B4N9C4   A0A0K8VD48   B5DUV6   A0A226ERP7   B3LWQ3   A0A0K2TY95   A0A1I8PMZ5   B3NZ74   A0A151WHQ1   A0A2S2NL98   A0A2L2Y794   A0A210QCZ3   A0A3B0K410   T2M6C7   B4PLA7   A0A1D2NAS9   A0A3Q0IK59   A0A0M5J973   A0A1W4UK86   W8CBG6   A0A2R7WWR1   J9K4Q5   B4JF32   A0A1A9ZXL9   A0A1I8MLZ2   A0A1A9VEP5   A0A0P5VM98   A0A0N8A1I1   A0A0P5T6S1   A0A0P5Q825   A0A1A9XZB6   A0A0P5LAL7   A0A0P4Y5P8   A0A0P5AZZ6   A0A2P6L4E4   U5EQP0   A0A0P5AVE5   A0A1A9W3X3   A0A224YXF6   G3MF44   A0A1E1XDB7  

PDB

6HKO     E-value=0.0001639,     Score=106

KEGG

101743619    K03005 DNA-directed RNA polymerase I subunit RPA49 | (RefSeq) uncharacterized LOC101743619

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0003899   GO:0005634   GO:0003677   GO:0006351   GO:0004252   GO:0006729   GO:0008124   GO:0016021   GO:0005736   GO:0006360   GO:0030246   GO:0004559   GO:0006013   GO:0015923   GO:0006260  

PANTHER

PTHR14440   PTHR12599  

Length:

359

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29933

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02525

outside

1  -  359

 

 

Pi

14.887623

Theta

12.121203

Tajima's D

0.678196

CLR

0.229576

CSRT

0.582070896455177

Interpretation

Uncertain